Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 0.0e+00 1607.8 940 100.0
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 9.9e-154 548.5 946 46.9
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.9e-144 517.7 906 46.5
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 8.2e-116 422.5 937 38.6
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 4.0e-102 377.1 1015 38.6
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 1.2e-87 328.9 938 36.8
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 5.4e-83 313.5 907 36.2
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 9.2e-83 312.8 929 32.7
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 1.2e-77 295.8 930 35.1
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 3.7e-76 290.8 946 37.3
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 4.6e-74 283.9 929 33.0
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 4.6e-74 283.9 967 32.4
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 6.0e-74 283.5 932 32.9
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 5.2e-70 270.4 967 32.6
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 5.8e-69 266.9 950 33.9
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 5.4e-67 260.4 1000 31.8
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 6.0e-66 256.9 983 34.3
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 2.3e-65 255.0 938 34.8
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.9e-64 251.9 1007 31.3
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 4.3e-64 250.8 983 31.7
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 3.6e-63 247.7 935 31.3
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 6.8e-62 243.4 927 31.3
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 8.9e-62 243.0 963 31.3
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 8.9e-62 243.0 942 32.1
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 6.0e-58 230.3 960 29.5
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 3.3e-56 224.6 947 32.0
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 4.3e-56 224.2 953 32.9
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 4.7e-55 220.7 961 30.0
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 4.7e-55 220.7 973 29.8
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.3e-52 212.6 947 30.1
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 6.4e-52 210.3 906 30.6
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 6.4e-52 210.3 947 30.7
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.4e-51 208.4 940 28.6
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 9.2e-51 206.5 967 28.9
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 2.1e-50 205.3 956 29.9
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 4.6e-50 204.1 969 30.4
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 6.0e-50 203.8 946 30.1
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 7.8e-50 203.4 933 28.4
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 2.3e-49 201.8 917 33.5
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 5.1e-49 200.7 964 32.6
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 1.1e-48 199.5 1052 29.0
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.5e-48 199.1 994 31.7
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 1.5e-48 199.1 947 29.8
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 9.6e-48 196.4 932 30.7
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.6e-47 195.7 960 30.1
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.4e-46 192.6 985 30.6
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 3.1e-46 191.4 927 30.4
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 2.0e-45 188.7 968 28.1
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.8e-45 187.2 938 30.7
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 9.9e-45 186.4 949 30.5
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 2.9e-44 184.9 969 29.7
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 2.4e-43 181.8 945 29.8
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 4.2e-43 181.0 953 29.1
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 7.1e-43 180.3 944 32.3
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 2.1e-42 178.7 970 30.6
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 6.0e-42 177.2 951 32.9
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 7.8e-42 176.8 991 28.7
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.0e-41 174.9 963 30.2
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.1e-41 174.1 945 29.6
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 3.6e-39 167.9 957 27.8
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 3.6e-39 167.9 923 29.3
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 6.2e-39 167.2 880 30.1
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 1.4e-38 166.0 937 28.0
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 6.9e-38 163.7 941 29.6
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 6.9e-38 163.7 516 33.9
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 1.2e-37 162.9 932 34.5
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 2.6e-37 161.8 916 29.4
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.4e-37 161.4 469 33.0
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 9.9e-37 159.8 946 29.3
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.1e-35 156.4 297 43.8
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.1e-35 156.4 925 29.0
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.9e-35 155.6 932 29.9
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 3.2e-35 154.8 532 31.8
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.6e-34 152.5 853 29.4
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.7e-34 151.8 459 31.2
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 6.0e-34 150.6 459 31.2
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.0e-33 149.8 925 26.6
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.0e-33 149.8 925 26.6
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 3.0e-33 148.3 937 29.6
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 5.1e-33 147.5 922 27.9
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 1.5e-32 146.0 926 28.9
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 2.5e-32 145.2 553 28.8
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 4.3e-32 144.4 919 27.0
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 7.4e-32 143.7 942 27.9
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.3e-31 142.9 954 28.7
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 1.3e-31 142.9 957 29.3
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.6e-31 142.5 902 30.6
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 2.1e-31 142.1 919 27.6
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 1.1e-30 139.8 530 30.6
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 9.0e-30 136.7 950 26.4
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 8.4e-28 130.2 942 27.4
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.9e-24 119.0 422 29.1
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 2.1e-23 115.5 992 24.8
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 2.8e-23 115.2 950 26.3
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 4.8e-23 114.4 926 27.4
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 6.2e-23 114.0 175 45.1
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 2.4e-22 112.1 281 35.9
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 6.9e-22 110.5 896 28.6
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 6.9e-22 110.5 1011 26.5
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 9.0e-22 110.2 906 25.3
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 5.8e-21 107.5 385 32.2
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 1.1e-19 103.2 892 25.1
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 9.3e-19 100.1 849 27.2
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.2e-18 99.8 945 25.7
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.6e-18 99.4 849 27.1
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 2.1e-18 99.0 241 39.8
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 3.5e-18 98.2 314 35.7
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 1.3e-17 96.3 467 28.5
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 1.5e-16 92.8 295 35.3
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 5.7e-16 90.9 844 26.7
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 7.4e-16 90.5 255 32.9
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 9.7e-16 90.1 878 25.9
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.3e-15 89.7 944 25.6
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 2.8e-15 88.6 963 24.0
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 3.7e-15 88.2 881 25.2
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 8.2e-15 87.0 195 40.5
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 2.4e-14 85.5 943 24.3
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 3.1e-14 85.1 910 26.7
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 1.2e-13 83.2 195 38.5
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.3e-12 79.7 882 24.7
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 2.2e-12 79.0 115 47.0
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 3.8e-12 78.2 126 46.0
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 8.5e-12 77.0 887 23.9
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.9e-11 75.9 873 26.0
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 3.2e-11 75.1 925 24.8
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 5.5e-11 74.3 202 36.1
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 6.1e-10 70.9 90 52.2
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 1.0e-09 70.1 176 40.9
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 1.0e-09 70.1 868 22.7
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.4e-09 69.7 869 23.0
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 3.9e-09 68.2 85 50.6
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 5.1e-09 67.8 869 23.2
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.1e-09 67.8 135 40.7
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 5.1e-09 67.8 272 31.2
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 1.5e-08 66.2 841 23.5
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 2.5e-08 65.5 255 32.9
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 5.7e-08 64.3 80 62.5
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 9.7e-08 63.5 239 32.2
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.8e-06 59.3 102 39.2
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 4.1e-06 58.2 266 30.8
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 4.1e-06 58.2 218 30.7
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 4.1e-06 58.2 190 35.3
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 5.3e-06 57.8 169 32.5
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 6.9e-06 57.4 218 30.7
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 9.1e-06 57.0 99 51.5


User provided reference genes

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