Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.1e-147 525.0 252 100.0
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.1e-147 525.0 252 100.0
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.4e-102 375.9 250 74.8
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 7.1e-99 364.4 251 71.3
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 9.6e-96 354.0 251 69.3
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.3e-94 348.2 252 69.4
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 2.6e-93 345.9 245 69.0
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.6e-93 345.9 252 69.0
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 4.8e-87 325.1 252 66.7
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 7.6e-85 317.8 253 61.7
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.9e-84 315.1 253 63.2
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 4.9e-84 315.1 250 62.8
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 6.5e-84 314.7 251 61.8
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.4e-83 313.5 250 62.4
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.9e-83 313.2 253 63.6
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.5e-83 312.8 249 63.5
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.5e-83 311.6 252 61.9
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 7.1e-83 311.2 263 60.8
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.3e-83 310.8 252 61.5
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 9.3e-83 310.8 253 62.5
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 9.3e-83 310.8 250 63.2
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.6e-82 310.1 253 62.8
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.1e-82 309.7 252 61.5
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 4.6e-82 308.5 252 61.9
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.8e-81 306.6 251 62.9
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.8e-81 306.6 246 65.4
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 3.0e-81 305.8 244 62.7
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 3.9e-81 305.4 253 62.1
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 5.1e-81 305.1 255 62.4
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 6.7e-81 304.7 250 58.4
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 8.7e-81 304.3 254 59.8
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 8.7e-81 304.3 249 63.1
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 8.7e-81 304.3 250 62.4
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.1e-80 303.9 253 62.5
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.1e-80 303.9 242 62.0
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.9e-80 303.1 250 62.0
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.9e-80 303.1 251 62.9
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.3e-80 302.0 249 62.2
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 7.4e-80 301.2 213 66.2
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.6e-79 300.1 251 59.8
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.8e-79 299.3 254 60.2
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 2.8e-79 299.3 250 60.8
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 3.7e-79 298.9 208 68.8
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 4.8e-79 298.5 251 59.8
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 8.2e-79 297.7 250 60.0
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.1e-78 297.4 255 60.4
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.4e-78 297.0 237 61.2
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.8e-78 296.6 252 59.1
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 3.1e-78 295.8 247 62.8
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.1e-78 295.8 253 62.1
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 9.0e-78 294.3 252 59.9
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-77 293.9 252 58.3
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.0e-77 293.1 223 62.8
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.0e-77 293.1 220 63.6
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.0e-77 293.1 252 61.1
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 2.0e-77 293.1 246 63.0
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 3.4e-77 292.4 254 60.6
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.5e-77 292.0 261 58.2
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 5.9e-77 291.6 252 60.7
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 5.9e-77 291.6 252 58.7
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 5.9e-77 291.6 255 59.6
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.0e-76 290.8 215 64.7
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.0e-76 290.8 243 60.9
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.3e-76 290.4 248 57.7
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 1.3e-76 290.4 251 58.6
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.3e-76 290.4 173 77.5
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.7e-76 290.0 248 57.7
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.7e-76 290.0 251 61.4
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.7e-76 290.0 176 75.6
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 2.9e-76 289.3 250 62.0
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.9e-76 289.3 250 62.0
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 3.8e-76 288.9 255 58.0
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 6.5e-76 288.1 252 57.1
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 6.5e-76 288.1 252 58.3
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 6.5e-76 288.1 211 66.8
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 8.5e-76 287.7 247 59.9
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.4e-75 287.0 239 58.2
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.4e-75 287.0 174 75.9
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.9e-75 286.6 172 75.6
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 3.2e-75 285.8 251 57.8
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 7.2e-75 284.6 252 59.9
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.2e-74 283.9 250 55.6
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 2.1e-74 283.1 208 63.9
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 4.6e-74 282.0 246 58.5
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 7.9e-74 281.2 241 61.4
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 7.9e-74 281.2 215 62.8
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.0e-73 280.8 249 58.2
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.4e-73 280.4 209 61.7
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 2.3e-73 279.6 174 73.6
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 3.9e-73 278.9 211 62.1
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 5.1e-73 278.5 171 74.3
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 6.7e-73 278.1 254 57.5
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.1e-72 277.3 172 70.3
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.5e-72 276.9 252 57.9
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.5e-72 276.9 171 72.5
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.5e-72 276.9 171 72.5
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 2.0e-72 276.6 250 57.2
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.0e-72 276.6 209 62.2
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.0e-72 276.6 204 63.7
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 5.7e-72 275.0 232 59.1
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.3e-71 273.9 166 74.7
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.7e-71 273.5 254 55.1
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 6.3e-71 271.6 186 67.7
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 3.1e-70 269.2 253 54.5
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 4.1e-70 268.9 171 73.1
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 9.1e-70 267.7 218 60.6
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 9.1e-70 267.7 245 54.3
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 9.1e-70 267.7 291 50.5
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 4.5e-69 265.4 200 61.0
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 4.5e-69 265.4 200 61.0
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.0e-68 264.2 219 57.5
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 2.2e-68 263.1 202 61.4
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 6.5e-68 261.5 205 60.5
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 1.1e-67 260.8 180 65.6
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.4e-67 260.4 177 66.7
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.9e-67 260.0 167 69.5
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.9e-67 260.0 180 65.6
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.1e-64 250.8 215 59.1
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.2e-63 246.5 215 58.6
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.7e-63 245.7 251 51.8
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 3.7e-63 245.7 146 77.4
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 3.7e-63 245.7 180 65.0
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 3.1e-62 242.7 215 58.6
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 3.1e-62 242.7 246 54.1
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.6e-61 239.6 144 76.4
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 4.5e-61 238.8 174 64.4
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 5.9e-61 238.4 233 55.4
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 1.1e-59 234.2 164 65.2
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.2e-58 230.7 136 75.7
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 2.7e-58 229.6 164 64.0
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 2.3e-57 226.5 164 64.0
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 5.2e-57 225.3 162 64.2
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 2.8e-55 219.5 171 59.6
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 6.3e-55 218.4 136 73.5
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.6e-53 213.8 170 57.6
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.6e-53 213.8 255 50.6
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.0e-52 211.1 142 66.9
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.7e-52 210.3 182 58.8
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.8e-52 209.1 167 56.9
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 4.2e-51 205.7 242 48.3
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.6e-50 203.8 251 46.6
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.7e-50 202.2 250 48.4
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.0e-49 201.1 138 69.6
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 3.0e-49 199.5 116 79.3
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.5e-37 159.5 128 61.7
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 3.6e-34 149.4 91 74.7
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 5.7e-32 142.1 137 54.0
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.7e-31 140.6 111 59.5
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-29 134.0 84 75.0
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.3e-28 131.0 148 47.3
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 4.0e-25 119.4 215 31.2
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 6.8e-25 118.6 79 63.3
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 7.5e-24 115.2 63 85.7
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 9.8e-24 114.8 71 76.1
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 9.8e-24 114.8 137 43.1
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 6.4e-23 112.1 88 64.8
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.5e-19 100.9 58 75.9
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.8e-17 92.0 68 58.8
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-13 80.9 76 50.0
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 5.1e-12 75.9 39 82.1
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 2.1e-10 70.5 94 45.7
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 2.1e-10 70.5 52 61.5
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.8e-10 70.1 51 58.8
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.6e-08 63.5 52 53.8
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.8e-08 62.4 51 52.9
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 9.2e-06 55.1 76 40.8


User provided reference genes

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