Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 7.6e-64 246.9 116 100.0
Hund00283 Selenicereus undatus HOM05D013587 ORTHO05D002252 2.3e-36 155.6 98 74.5
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 8.8e-36 153.7 98 73.5
EL10Ac9g21743 Beta vulgaris HOM05D013587 ORTHO05D002252 7.5e-19 97.4 109 49.5
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.7e-15 86.3 109 49.5
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.7e-15 86.3 109 49.5
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 3.8e-15 85.1 99 49.5
EL10Ac4g09227 Beta vulgaris HOM05D037403 ORTHO05D002252 8.5e-15 84.0 114 41.2
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 3.0e-12 75.5 76 48.7
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 1.5e-11 73.2 111 36.0
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 2.0e-11 72.8 76 48.7
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 4.4e-11 71.6 97 40.2
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 5.7e-11 71.2 76 46.1
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.7e-10 69.7 79 48.1
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 2.8e-10 68.9 78 41.0
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 4.8e-10 68.2 86 40.7
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 1.1e-09 67.0 63 52.4
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 1.4e-09 66.6 67 49.3
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 2.4e-09 65.9 101 38.6
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 4.1e-09 65.1 80 41.2
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 4.1e-09 65.1 70 45.7
EL10Ac4g09228 Beta vulgaris HOM05D037403 ORTHO05D002252 5.4e-09 64.7 89 41.6
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 5.4e-09 64.7 107 32.7
EL10Ac4g09226 Beta vulgaris HOM05D037403 ORTHO05D002252 7.0e-09 64.3 89 40.4
AUR62016715 Chenopodium quinoa HOM05D013587 ORTHO05D002252 7.0e-09 64.3 112 37.5
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 9.1e-09 63.9 86 39.5
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 9.1e-09 63.9 83 42.2
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 9.1e-09 63.9 67 47.8
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.2e-08 63.5 120 34.2
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.6e-08 63.2 71 42.3
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 1.6e-08 63.2 71 43.7
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 1.6e-08 63.2 88 37.5
AUR62011347 Chenopodium quinoa HOM05D013587 ORTHO05D002252 2.0e-08 62.8 82 48.8
AUR62032492 Chenopodium quinoa HOM05D031247 ORTHO05D002252 2.0e-08 62.8 105 40.0
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 2.7e-08 62.4 73 43.8
Nitab4.5_0000295g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.7e-08 62.4 81 38.3
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.7e-08 62.4 83 37.3
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 2.7e-08 62.4 83 39.8
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 2.7e-08 62.4 74 43.2
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 3.5e-08 62.0 79 38.0
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 5.9e-08 61.2 77 45.5
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 1.0e-07 60.5 62 43.5
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 1.0e-07 60.5 74 44.6
Sc18g0004570 Simmondsia chinensis HOM05D013587 ORTHO05D002252 1.0e-07 60.5 101 37.6
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 1.3e-07 60.1 93 38.7
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 1.3e-07 60.1 90 33.3
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.3e-07 60.1 87 37.9
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 1.3e-07 60.1 62 46.8
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.7e-07 59.7 60 45.0
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.7e-07 59.7 60 43.3
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 2.3e-07 59.3 77 37.7
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 2.3e-07 59.3 94 33.0
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 2.3e-07 59.3 95 38.9
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.9e-07 58.9 92 37.0
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 2.9e-07 58.9 74 47.3
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 2.9e-07 58.9 70 44.3
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 2.9e-07 58.9 85 40.0
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 3.8e-07 58.5 109 32.1
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 5.0e-07 58.2 103 33.0
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 5.0e-07 58.2 63 47.6
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 6.6e-07 57.8 76 39.5
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 6.6e-07 57.8 64 45.3
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 6.6e-07 57.8 73 39.7
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 6.6e-07 57.8 77 40.3
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 8.6e-07 57.4 95 34.7
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 8.6e-07 57.4 61 49.2
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 8.6e-07 57.4 81 40.7
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 8.6e-07 57.4 67 43.3
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 8.6e-07 57.4 70 42.9
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 1.1e-06 57.0 112 32.1
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 1.5e-06 56.6 72 43.1
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 1.5e-06 56.6 74 41.9
AL1G56180 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 1.9e-06 56.2 75 40.0
AL1G56260 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 1.9e-06 56.2 75 40.0
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 1.9e-06 56.2 74 41.9
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 1.9e-06 56.2 74 41.9
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 1.9e-06 56.2 74 41.9
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 1.9e-06 56.2 74 41.9
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 1.9e-06 56.2 74 41.9
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.9e-06 56.2 63 41.3
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 1.9e-06 56.2 76 36.8
AUR62039400 Chenopodium quinoa HOM05D031247 ORTHO05D002252 2.5e-06 55.8 101 40.6
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 2.5e-06 55.8 123 31.7
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 2.5e-06 55.8 80 41.2
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.3e-06 55.5 81 37.0
Peaxi162Scf00003g01323 Petunia axillaris HOM05D007227 ORTHO05D002252 3.3e-06 55.5 67 37.3
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 4.2e-06 55.1 65 41.5
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 4.2e-06 55.1 74 41.9
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 4.2e-06 55.1 74 41.9
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 4.2e-06 55.1 71 42.3
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 4.2e-06 55.1 78 37.2
AT1G49310 Arabidopsis thaliana HOM05D009461 ORTHO05D002252 5.5e-06 54.7 85 38.8
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 5.5e-06 54.7 63 44.4
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 5.5e-06 54.7 63 44.4
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 5.5e-06 54.7 77 37.7
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 5.5e-06 54.7 86 37.2
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 7.2e-06 54.3 72 40.3
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 9.5e-06 53.9 74 40.5
A06p03910 Brassica napus HOM05D009461 ORTHO05D002252 9.5e-06 53.9 74 40.5
BolC6t35534H Brassica oleracea HOM05D009461 ORTHO05D002252 9.5e-06 53.9 74 40.5
BraA06t23599Z Brassica rapa HOM05D009461 ORTHO05D002252 9.5e-06 53.9 74 40.5
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 9.5e-06 53.9 95 35.8
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 9.5e-06 53.9 84 40.5
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 9.5e-06 53.9 84 35.7


User provided reference genes

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