Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 9.2e-65 250.0 119 100.0
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 9.2e-65 250.0 119 100.0
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.7e-58 229.2 119 89.9
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 1.5e-51 206.1 114 83.3
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 2.6e-51 205.3 110 85.5
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 3.4e-51 204.9 106 89.6
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 5.8e-51 204.1 110 83.6
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 5.8e-51 204.1 105 90.5
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 7.6e-51 203.8 106 88.7
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.3e-50 203.0 111 82.9
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.9e-50 201.8 115 79.1
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 4.9e-50 201.1 114 80.7
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 4.9e-50 201.1 109 84.4
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 6.4e-50 200.7 114 81.6
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 8.4e-50 200.3 115 78.3
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 8.4e-50 200.3 111 81.1
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 8.4e-50 200.3 109 82.6
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.1e-49 199.9 111 82.0
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.1e-49 199.9 111 82.9
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 1.9e-49 199.1 111 81.1
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.4e-49 198.7 111 82.0
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.4e-49 198.7 111 82.0
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.4e-49 198.7 115 78.3
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 3.2e-49 198.4 114 78.1
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.2e-49 198.4 111 81.1
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 3.2e-49 198.4 111 81.1
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 3.2e-49 198.4 111 80.2
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 4.2e-49 198.0 112 77.7
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 4.2e-49 198.0 111 80.2
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 4.2e-49 198.0 114 78.1
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 5.4e-49 197.6 114 78.9
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 7.1e-49 197.2 112 76.8
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 9.3e-49 196.8 112 78.6
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 9.3e-49 196.8 112 77.7
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.2e-48 196.4 112 76.8
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 1.2e-48 196.4 112 77.7
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.2e-48 196.4 111 78.4
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 1.6e-48 196.1 116 76.7
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 2.1e-48 195.7 103 86.4
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 2.1e-48 195.7 112 76.8
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 2.1e-48 195.7 112 76.8
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 2.1e-48 195.7 112 76.8
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 2.1e-48 195.7 112 76.8
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 2.1e-48 195.7 111 79.3
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.1e-48 195.7 111 79.3
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.1e-48 195.7 114 78.1
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 2.1e-48 195.7 115 75.7
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.7e-48 195.3 112 77.7
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 2.7e-48 195.3 112 77.7
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.5e-48 194.9 112 77.7
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.5e-48 194.9 112 77.7
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 3.5e-48 194.9 110 79.1
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 3.5e-48 194.9 111 78.4
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 3.5e-48 194.9 110 78.2
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.5e-48 194.9 111 79.3
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 4.6e-48 194.5 110 79.1
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 6.0e-48 194.1 112 75.9
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 6.0e-48 194.1 113 76.1
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 7.9e-48 193.7 112 75.9
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 7.9e-48 193.7 112 75.9
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 7.9e-48 193.7 112 76.8
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 7.9e-48 193.7 114 76.3
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 7.9e-48 193.7 112 77.7
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 1.0e-47 193.4 112 75.9
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 1.0e-47 193.4 112 75.9
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.0e-47 193.4 111 78.4
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 1.0e-47 193.4 112 76.8
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.0e-47 193.4 112 76.8
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.0e-47 193.4 111 79.3
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 1.3e-47 193.0 114 75.4
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.3e-47 193.0 111 78.4
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 1.3e-47 193.0 111 78.4
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.3e-47 193.0 112 78.6
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 1.3e-47 193.0 111 76.6
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 1.7e-47 192.6 111 78.4
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.0e-47 191.8 112 76.8
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 3.9e-47 191.4 115 76.5
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 5.1e-47 191.0 111 74.8
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 5.1e-47 191.0 112 74.1
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 5.1e-47 191.0 112 74.1
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 5.1e-47 191.0 112 74.1
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 5.1e-47 191.0 111 76.6
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 5.1e-47 191.0 115 75.7
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 6.6e-47 190.7 113 75.2
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 6.6e-47 190.7 110 78.2
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 6.6e-47 190.7 111 77.5
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 8.7e-47 190.3 112 75.0
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 8.7e-47 190.3 114 75.4
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.1e-46 189.9 115 76.5
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 1.5e-46 189.5 111 76.6
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 2.5e-46 188.7 111 76.6
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 2.5e-46 188.7 111 75.7
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 3.3e-46 188.3 108 78.7
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 3.3e-46 188.3 110 78.2
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 4.3e-46 188.0 112 74.1
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 4.3e-46 188.0 111 75.7
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 5.6e-46 187.6 114 73.7
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 2.8e-45 185.3 104 78.8
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.8e-45 184.5 106 79.2
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.8e-45 184.5 112 74.1
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 4.8e-45 184.5 108 77.8
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 6.2e-45 184.1 108 76.9
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 1.8e-44 182.6 111 75.7
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 2.4e-44 182.2 136 66.2
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 4.0e-44 181.4 98 83.7
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.2e-43 179.9 111 73.9
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 1.2e-43 179.9 112 74.1
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 1.3e-42 176.4 111 70.3
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 1.7e-42 176.0 147 57.8
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 2.2e-42 175.6 104 76.0
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 4.9e-42 174.5 102 73.5
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 8.4e-42 173.7 101 77.2
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 2.4e-41 172.2 104 74.0
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 3.2e-41 171.8 129 62.8
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 5.4e-41 171.0 112 72.3
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.5e-40 168.3 100 76.0
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 1.3e-39 166.4 98 78.6
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 1.1e-38 163.3 101 71.3
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 3.3e-38 161.8 179 49.2
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.8e-36 156.0 115 66.1
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 3.8e-34 148.3 88 76.1
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 3.2e-33 145.2 114 56.1
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 1.0e-31 140.2 112 54.5
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.3e-31 139.8 114 62.3
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.3e-31 139.8 112 55.4
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 1.3e-29 133.3 112 57.1
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 2.1e-29 132.5 82 70.7
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 4.5e-27 124.8 106 51.9
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 2.5e-25 119.0 60 85.0
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 6.1e-24 114.4 113 46.0
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 1.3e-23 113.2 57 82.5
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 3.0e-23 112.1 103 49.5
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.7e-23 110.9 81 67.9
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 1.1e-22 110.2 57 80.7
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 1.1e-22 110.2 60 78.3
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 1.9e-22 109.4 99 50.5
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 2.8e-21 105.5 154 40.9
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 1.1e-20 103.6 113 47.8
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.8e-20 102.8 57 75.4
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.7e-18 96.3 57 80.7
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 2.5e-17 92.4 96 44.8
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 4.6e-16 88.2 52 80.8
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 1.0e-15 87.0 80 53.8
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 1.1e-14 83.6 55 65.5
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 2.4e-12 75.9 47 66.0
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 4.1e-12 75.1 76 52.6
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 6.1e-08 61.2 91 35.2
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 6.7e-07 57.8 82 43.9


User provided reference genes

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