Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.8e-51 204.9 97 100.0
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.0e-29 133.3 100 64.0
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.9e-28 129.0 100 63.0
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 7.4e-28 127.1 100 60.0
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.3e-27 126.3 86 66.3
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 2.1e-27 125.6 100 60.0
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.7e-27 124.8 100 60.0
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 6.2e-27 124.0 100 60.0
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.4e-26 122.9 99 60.6
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 1.8e-26 122.5 98 59.2
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.4e-26 122.1 106 57.5
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 2.4e-26 122.1 100 59.0
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 3.1e-26 121.7 102 56.9
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.1e-26 121.7 100 57.0
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.1e-26 121.7 100 57.0
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 3.1e-26 121.7 100 57.0
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 3.1e-26 121.7 100 61.0
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 5.3e-26 120.9 100 59.0
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 6.9e-26 120.6 99 59.6
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 6.9e-26 120.6 99 56.6
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 6.9e-26 120.6 109 53.2
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 9.0e-26 120.2 99 56.6
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 9.0e-26 120.2 100 60.0
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.2e-25 119.8 100 56.0
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.2e-25 119.8 100 58.0
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.2e-25 119.8 100 58.0
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.5e-25 119.4 99 56.6
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.0e-25 119.0 100 57.0
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 2.0e-25 119.0 99 57.6
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 2.6e-25 118.6 100 55.0
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 2.6e-25 118.6 100 55.0
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 3.4e-25 118.2 99 57.6
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 4.5e-25 117.9 99 58.6
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 4.5e-25 117.9 100 58.0
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 4.5e-25 117.9 99 58.6
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 4.5e-25 117.9 100 55.0
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 5.8e-25 117.5 98 56.1
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 5.8e-25 117.5 101 59.4
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 7.6e-25 117.1 100 55.0
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 9.9e-25 116.7 102 54.9
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 9.9e-25 116.7 101 56.4
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.3e-24 116.3 100 56.0
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 2.2e-24 115.5 99 55.6
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 3.8e-24 114.8 100 54.0
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 3.8e-24 114.8 100 53.0
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.8e-24 114.8 100 53.0
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 4.9e-24 114.4 100 53.0
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 4.9e-24 114.4 100 54.0
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 4.9e-24 114.4 100 53.0
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 4.9e-24 114.4 99 56.6
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 4.9e-24 114.4 99 55.6
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 6.4e-24 114.0 106 54.7
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 8.4e-24 113.6 100 56.0
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 8.4e-24 113.6 101 55.4
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 8.4e-24 113.6 99 57.6
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 1.1e-23 113.2 99 54.5
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 1.1e-23 113.2 100 54.0
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.4e-23 112.8 100 55.0
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.4e-23 112.8 100 55.0
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.4e-23 112.8 100 55.0
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.4e-23 112.8 99 55.6
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.9e-23 112.5 100 52.0
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.9e-23 112.5 99 53.5
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 2.4e-23 112.1 101 52.5
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.4e-23 112.1 100 53.0
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 2.4e-23 112.1 100 53.0
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.4e-23 112.1 100 52.0
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 3.2e-23 111.7 99 54.5
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 4.2e-23 111.3 99 55.6
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 4.2e-23 111.3 100 54.0
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 4.2e-23 111.3 102 52.9
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 5.5e-23 110.9 100 53.0
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 5.5e-23 110.9 99 53.5
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 5.5e-23 110.9 100 54.0
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 5.5e-23 110.9 106 51.9
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 7.1e-23 110.5 99 53.5
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 7.1e-23 110.5 106 54.7
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 7.1e-23 110.5 106 54.7
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 7.1e-23 110.5 101 54.5
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 9.3e-23 110.2 99 52.5
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 9.3e-23 110.2 100 52.0
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 9.3e-23 110.2 98 52.0
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 9.3e-23 110.2 100 51.0
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.2e-22 109.8 99 54.5
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 1.2e-22 109.8 99 55.6
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 1.6e-22 109.4 101 51.5
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.6e-22 109.4 100 52.0
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.6e-22 109.4 101 53.5
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 2.1e-22 109.0 99 53.5
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 2.1e-22 109.0 101 52.5
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 3.5e-22 108.2 101 52.5
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 3.5e-22 108.2 101 52.5
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 3.5e-22 108.2 101 52.5
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 4.6e-22 107.8 99 54.5
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 4.6e-22 107.8 101 52.5
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 4.6e-22 107.8 101 52.5
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 6.0e-22 107.5 87 57.5
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 6.0e-22 107.5 101 52.5
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 7.9e-22 107.1 98 55.1
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.0e-21 106.7 128 43.0
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 1.3e-21 106.3 112 47.3
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 1.3e-21 106.3 101 52.5
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.3e-21 106.3 97 53.6
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 3.0e-21 105.1 115 46.1
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 3.0e-21 105.1 100 51.0
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 3.9e-21 104.8 101 51.5
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.9e-21 104.8 95 53.7
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.5e-20 102.8 100 49.0
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.7e-19 98.2 99 50.5
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.1e-18 96.7 95 51.6
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.8e-18 95.9 106 48.1
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 1.5e-17 92.8 98 46.9
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 2.2e-16 89.0 62 62.9
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 6.5e-16 87.4 97 46.4
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.4e-15 86.3 57 66.7
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 3.2e-15 85.1 60 61.7
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 3.2e-15 85.1 57 63.2
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 3.2e-15 85.1 92 50.0
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 7.1e-15 84.0 57 63.2
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 7.1e-15 84.0 96 43.8
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 4.6e-14 81.3 82 51.2
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 6.0e-14 80.9 56 66.1
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 7.9e-14 80.5 96 42.7
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 7.9e-14 80.5 98 41.8
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 1.8e-13 79.3 95 43.2
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 3.0e-13 78.6 76 50.0
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 6.7e-13 77.4 57 59.6
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 6.7e-13 77.4 97 42.3
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 2.5e-12 75.5 79 46.8
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 9.7e-12 73.6 87 43.7
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.3e-11 73.2 67 55.2
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 1.2e-09 66.6 85 43.5
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.5e-09 66.2 45 62.2
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.0e-09 65.9 45 62.2
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 6.5e-08 60.8 79 40.5
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 6.5e-08 60.8 88 36.4
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 6.5e-08 60.8 79 40.5
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.5e-07 57.8 55 52.7
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 7.2e-07 57.4 88 36.4


User provided reference genes

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