Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 9.1e-290 999.6 525 100.0
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 6.0e-217 757.7 564 71.6
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.0e-216 756.9 576 72.2
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.1e-215 753.4 602 69.8
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.8e-214 748.0 582 71.0
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 4.5e-212 741.5 571 71.1
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.3e-211 740.0 575 70.6
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.9e-210 736.1 537 72.4
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 3.2e-210 735.3 569 71.2
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.7e-209 732.3 567 70.7
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 1.0e-208 730.3 528 74.2
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.3e-208 729.2 574 70.0
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 3.0e-208 728.8 570 70.0
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 3.0e-208 728.8 551 70.1
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 3.9e-208 728.4 579 68.2
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 6.7e-208 727.6 570 69.8
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 2.5e-207 725.7 570 69.1
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 3.3e-207 725.3 537 70.9
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 4.3e-207 724.9 531 71.9
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 5.6e-207 724.5 530 72.3
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 7.4e-207 724.2 570 69.8
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 9.6e-207 723.8 565 70.1
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 2.1e-206 722.6 570 69.6
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 2.1e-206 722.6 567 69.3
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 2.8e-206 722.2 531 72.1
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 2.8e-206 722.2 544 71.1
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 4.8e-206 721.5 582 67.0
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 1.1e-205 720.3 574 69.5
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 1.1e-205 720.3 531 71.6
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.4e-205 719.9 574 69.3
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 1.4e-205 719.9 563 70.5
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.8e-205 719.5 595 67.1
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.8e-205 719.5 578 69.4
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 2.4e-205 719.2 568 69.7
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.4e-205 719.2 544 71.3
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 2.4e-205 719.2 532 71.8
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 2.4e-205 719.2 489 77.1
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 4.0e-205 718.4 576 68.4
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 5.3e-205 718.0 575 67.5
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 5.3e-205 718.0 528 71.6
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 6.9e-205 717.6 544 71.1
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 6.9e-205 717.6 566 68.9
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 9.0e-205 717.2 531 71.8
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 1.5e-204 716.5 563 70.0
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 2.0e-204 716.1 565 68.8
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 2.6e-204 715.7 554 70.4
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 4.5e-204 714.9 512 73.4
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 4.5e-204 714.9 572 66.6
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 5.8e-204 714.5 531 71.6
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 5.8e-204 714.5 572 68.4
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 1.0e-203 713.8 555 69.4
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.3e-203 713.4 571 68.0
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 2.2e-203 712.6 561 68.4
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 4.9e-203 711.4 566 69.3
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 4.9e-203 711.4 566 69.3
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 4.9e-203 711.4 571 68.0
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 4.9e-203 711.4 571 68.0
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 4.9e-203 711.4 584 67.0
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 8.4e-203 710.7 544 68.8
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 3.2e-202 708.8 580 67.9
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 4.2e-202 708.4 571 68.7
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 2.7e-201 705.7 573 68.4
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 3.5e-201 705.3 495 74.7
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 4.6e-201 704.9 568 68.5
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 4.6e-201 704.9 530 70.9
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 6.0e-201 704.5 573 68.4
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 2.3e-200 702.6 524 71.8
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 3.0e-200 702.2 571 68.5
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 3.9e-200 701.8 572 66.1
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 3.9e-200 701.8 572 67.3
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 3.9e-200 701.8 531 70.1
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 1.1e-199 700.3 529 70.9
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.1e-199 700.3 513 72.7
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 1.5e-199 699.9 562 68.1
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.9e-199 699.5 535 69.9
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 3.3e-199 698.7 576 67.7
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 5.7e-199 698.0 571 66.4
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 9.6e-199 697.2 586 67.4
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 3.7e-198 695.3 571 67.3
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 3.7e-198 695.3 501 72.5
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 8.2e-198 694.1 507 72.2
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.1e-197 693.7 520 70.0
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.4e-197 693.3 519 70.9
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 1.8e-197 693.0 587 65.8
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 2.4e-197 692.6 557 66.4
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 3.1e-197 692.2 526 69.8
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 6.9e-197 691.0 475 75.8
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 9.0e-197 690.6 514 71.8
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 2.6e-196 689.1 534 71.0
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 5.9e-196 688.0 492 73.6
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 3.8e-195 685.3 536 69.4
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 5.0e-195 684.9 514 70.6
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 1.4e-194 683.3 485 74.8
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 2.5e-194 682.6 534 68.4
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 9.3e-194 680.6 579 66.5
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 2.3e-192 676.0 503 72.2
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 5.1e-192 674.9 500 72.0
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 4.3e-191 671.8 531 68.7
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 3.1e-189 665.6 584 63.4
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 4.5e-188 661.8 394 85.5
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 2.2e-187 659.4 502 69.9
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 1.2e-185 653.7 403 83.1
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 5.3e-181 638.3 403 80.9
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 5.3e-181 638.3 465 71.6
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 6.9e-181 637.9 483 70.6
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 1.2e-180 637.1 539 65.9
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.1e-178 630.6 392 83.4
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.4e-178 630.2 403 79.7
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 3.2e-178 629.0 393 80.4
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.4e-176 623.6 386 83.4
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 1.1e-175 620.5 458 70.7
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.0e-172 609.8 510 64.5
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 6.5e-171 604.7 515 63.7
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 8.0e-169 597.8 511 63.0
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.1e-167 594.0 726 50.3
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 4.4e-167 592.0 403 74.9
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.6e-161 572.4 470 63.8
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 4.7e-161 572.0 577 56.7
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 5.2e-160 568.5 389 75.1
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.7e-158 563.5 392 74.0
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 4.8e-158 562.0 400 73.2
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 2.4e-157 559.7 391 73.1
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 5.9e-156 555.1 394 71.8
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 4.9e-150 535.4 484 61.6
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 2.1e-145 520.0 313 84.0
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.6e-145 519.2 448 65.0
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 1.7e-139 500.4 452 62.6
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 6.6e-131 471.9 354 67.5
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.9e-130 470.3 574 51.4
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 4.0e-128 462.6 468 58.3
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 7.5e-127 458.4 276 84.1
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.2e-119 434.5 257 84.0
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 1.4e-117 427.6 285 75.4
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 4.3e-114 416.0 527 49.7
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 5.4e-109 399.1 267 76.8
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 6.0e-108 395.6 379 58.8
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 6.0e-108 395.6 407 58.0
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 2.8e-105 386.7 442 49.5
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.9e-90 337.4 333 59.8
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 5.8e-87 325.9 441 47.4
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 2.7e-76 290.4 186 77.4
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.8e-59 234.6 528 35.2
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 7.7e-55 219.2 142 78.2
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.5e-50 204.9 213 54.0
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 5.3e-48 196.4 127 76.4
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 3.2e-45 187.2 177 57.6
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 1.2e-39 168.7 148 58.1
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 7.0e-32 142.9 189 47.1
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 9.2e-32 142.5 91 75.8
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 3.8e-30 137.1 108 70.4
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 9.2e-24 115.9 157 45.2
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 2.7e-23 114.4 87 65.5
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 4.4e-18 97.1 68 77.9
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 1.3e-17 95.5 67 73.1
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.3e-17 95.5 75 70.7
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 4.1e-16 90.5 66 72.7
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 1.5e-13 82.0 53 79.2
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.3e-13 80.5 64 60.9
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.2e-12 79.0 59 64.4
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 2.3e-11 74.7 141 36.2
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 2.9e-09 67.8 93 47.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 2.3e-06 58.2 49 65.3
PRCOL_00006033 Prasinoderma coloniale HOM05D001221 ORTHO05D002870 2.3e-06 58.2 394 23.9


User provided reference genes

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