Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 1.5e-59 233.0 150 100.0
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 7.6e-48 194.1 139 94.2
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 1.4e-33 146.7 100 75.0
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 5.5e-30 134.8 100 70.0
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.3e-28 130.2 134 61.9
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 1.3e-28 130.2 101 69.3
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 6.7e-28 127.9 100 67.0
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 1.5e-27 126.7 134 57.5
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 1.9e-27 126.3 100 67.0
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 5.6e-27 124.8 101 67.3
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 7.4e-27 124.4 134 60.4
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 7.4e-27 124.4 100 65.0
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 9.6e-27 124.0 100 66.0
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 1.3e-26 123.6 134 54.5
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 1.6e-26 123.2 134 55.2
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 1.6e-26 123.2 101 66.3
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 1.6e-26 123.2 134 54.5
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 1.6e-26 123.2 134 54.5
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 2.8e-26 122.5 100 67.0
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 2.8e-26 122.5 100 66.0
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 3.7e-26 122.1 100 64.0
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 3.7e-26 122.1 99 65.7
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 4.8e-26 121.7 100 68.0
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 8.2e-26 120.9 135 60.0
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 1.1e-25 120.6 100 65.0
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 1.1e-25 120.6 100 63.0
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 1.4e-25 120.2 100 62.0
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 1.4e-25 120.2 101 64.4
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 6.9e-25 117.9 100 64.0
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 9.0e-25 117.5 101 66.3
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.2e-24 117.1 100 61.0
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.2e-24 117.1 100 61.0
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 1.5e-24 116.7 100 64.0
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.5e-24 116.7 100 63.0
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 2.6e-24 115.9 100 63.0
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 2.6e-24 115.9 100 65.0
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 3.4e-24 115.5 101 65.3
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 4.5e-24 115.2 101 65.3
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 5.8e-24 114.8 100 63.0
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 5.8e-24 114.8 100 62.0
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 5.8e-24 114.8 100 63.0
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 1.0e-23 114.0 100 63.0
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.7e-23 113.2 100 63.0
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.7e-23 113.2 100 61.0
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 2.9e-23 112.5 100 61.0
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 2.9e-23 112.5 101 58.4
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 3.8e-23 112.1 100 62.0
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 4.9e-23 111.7 100 60.0
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.1e-22 110.5 100 60.0
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 1.4e-22 110.2 134 48.5
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 3.2e-22 109.0 99 61.6
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 4.2e-22 108.6 101 58.4
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 7.1e-22 107.8 100 60.0
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 7.1e-22 107.8 100 58.0
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 1.6e-21 106.7 101 57.4
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 1.6e-21 106.7 101 57.4
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 2.1e-21 106.3 101 57.4
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 2.1e-21 106.3 100 62.0
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 2.7e-21 105.9 100 56.0
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 2.7e-21 105.9 100 62.0
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 3.5e-21 105.5 100 56.0
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 4.6e-21 105.1 100 57.0
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 4.6e-21 105.1 100 58.0
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 6.0e-21 104.8 101 56.4
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 7.9e-21 104.4 99 55.6
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 7.9e-21 104.4 98 58.2
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 1.0e-20 104.0 80 63.8
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.8e-20 103.2 100 56.0
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 1.8e-20 103.2 100 57.0
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 2.3e-20 102.8 101 55.4
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 3.0e-20 102.4 101 53.5
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 3.0e-20 102.4 101 53.5
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 3.0e-20 102.4 136 45.6
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 3.9e-20 102.1 102 55.9
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 3.9e-20 102.1 100 55.0
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 6.7e-20 101.3 100 58.0
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 8.7e-20 100.9 103 55.3
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 1.1e-19 100.5 101 54.5
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 1.9e-19 99.8 103 56.3
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 1.9e-19 99.8 101 56.4
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 1.9e-19 99.8 135 47.4
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 2.5e-19 99.4 101 55.4
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 3.3e-19 99.0 101 55.4
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 7.4e-19 97.8 77 62.3
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 9.7e-19 97.4 95 52.6
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.3e-18 97.1 75 64.0
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 1.3e-18 97.1 100 54.0
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 2.2e-18 96.3 102 52.0
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 2.2e-18 96.3 100 57.0
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 2.8e-18 95.9 98 51.0
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 2.8e-18 95.9 101 54.5
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 3.7e-18 95.5 101 53.5
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 6.3e-18 94.7 100 58.0
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 1.8e-17 93.2 92 54.3
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 3.1e-17 92.4 98 53.1
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 6.9e-17 91.3 102 50.0
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 4.5e-16 88.6 98 51.0
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 7.6e-16 87.8 67 64.2
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 1.7e-15 86.7 136 41.2
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 3.8e-15 85.5 82 53.7
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 3.8e-15 85.5 75 57.3
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 3.8e-15 85.5 94 54.3
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 5.0e-15 85.1 129 43.4
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 6.5e-15 84.7 98 49.0
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 2.5e-14 82.8 78 55.1
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 4.2e-14 82.0 75 60.0
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 5.5e-14 81.6 99 48.5
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 5.5e-14 81.6 86 54.7
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 5.5e-14 81.6 84 57.1
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 9.3e-14 80.9 77 51.9
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 1.2e-13 80.5 85 55.3
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 4.6e-13 78.6 73 52.1
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 6.1e-13 78.2 136 43.4
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 6.1e-13 78.2 94 50.0
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 1.4e-12 77.0 68 61.8
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 3.0e-12 75.9 73 50.7
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 3.9e-12 75.5 76 60.5
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 8.8e-12 74.3 47 70.2
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 8.8e-12 74.3 108 45.4
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 8.8e-12 74.3 90 50.0
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 1.1e-11 73.9 93 46.2
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 1.1e-11 73.9 93 46.2
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 2.5e-11 72.8 95 49.5
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 3.3e-11 72.4 102 41.2
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 3.3e-11 72.4 85 51.8
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 2.2e-10 69.7 83 44.6
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 2.8e-10 69.3 102 39.2
Ah.01g018070 Amaranthus hybridus HOM05D007150 ORTHO05D008994 3.7e-10 68.9 127 39.4
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 6.9e-09 64.7 93 43.0
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 7.7e-08 61.2 102 36.3


User provided reference genes

Program Settings