Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.3e-84 316.2 151 100.0
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 8.1e-82 307.0 151 97.4
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.3e-76 289.7 151 88.1
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 6.6e-76 287.3 148 88.5
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 8.6e-76 287.0 151 86.8
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 1.1e-75 286.6 151 85.4
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 1.1e-75 286.6 151 85.4
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.1e-75 286.6 151 85.4
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.5e-75 286.2 151 85.4
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 4.3e-75 284.6 151 84.8
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 5.6e-75 284.3 151 84.8
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 1.2e-74 283.1 151 84.1
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.6e-74 282.7 151 85.4
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 8.1e-74 280.4 151 84.1
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 1.1e-73 280.0 151 82.8
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 1.8e-73 279.3 151 84.1
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 4.0e-73 278.1 151 82.8
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 4.0e-73 278.1 151 83.4
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 5.2e-73 277.7 151 83.4
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 5.2e-73 277.7 151 82.8
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 5.2e-73 277.7 151 84.8
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 5.2e-73 277.7 151 83.4
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 8.9e-73 276.9 151 84.1
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 1.5e-72 276.2 151 84.1
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 2.0e-72 275.8 151 82.8
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 4.4e-72 274.6 151 82.1
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 5.8e-72 274.2 148 83.8
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 5.8e-72 274.2 148 83.8
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 9.9e-72 273.5 151 82.1
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 1.3e-71 273.1 146 84.9
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 2.2e-71 272.3 151 82.1
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 2.9e-71 271.9 151 82.8
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 2.9e-71 271.9 151 80.8
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 2.9e-71 271.9 151 81.5
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 4.9e-71 271.2 151 80.8
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 8.4e-71 270.4 147 81.6
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 4.2e-70 268.1 148 80.4
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 5.4e-70 267.7 151 80.1
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 7.1e-70 267.3 151 80.1
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 2.1e-69 265.8 151 80.1
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 2.1e-69 265.8 151 79.5
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.0e-68 263.5 144 84.0
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.3e-68 263.1 149 79.2
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.3e-68 262.3 151 78.8
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 6.6e-68 260.8 145 81.4
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 6.6e-68 260.8 138 87.0
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.5e-67 259.6 147 80.3
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.5e-67 258.8 140 85.0
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.3e-67 258.5 142 82.4
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 4.3e-67 258.1 151 77.5
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 4.3e-67 258.1 151 76.8
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 5.6e-67 257.7 140 84.3
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 5.6e-67 257.7 140 85.0
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 9.6e-67 256.9 148 78.4
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.3e-66 256.5 151 76.8
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.6e-66 256.1 151 75.5
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 3.6e-66 255.0 151 74.8
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 4.8e-66 254.6 148 77.0
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 8.1e-66 253.8 151 74.8
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 1.1e-65 253.4 151 78.1
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 1.4e-65 253.1 151 74.2
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.8e-65 252.7 151 74.8
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.8e-65 252.7 151 74.8
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 1.8e-65 252.7 151 74.8
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 1.8e-65 252.7 151 74.8
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 3.1e-65 251.9 151 73.5
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 5.3e-65 251.1 151 74.2
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 6.9e-65 250.8 151 74.2
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.9e-65 250.8 151 75.5
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 9.0e-65 250.4 151 76.8
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 9.0e-65 250.4 151 75.5
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.2e-64 250.0 151 74.2
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 1.2e-64 250.0 151 73.5
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.2e-64 250.0 151 73.5
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 2.0e-64 249.2 142 79.6
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 2.0e-64 249.2 148 75.7
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 2.6e-64 248.8 151 72.8
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 2.6e-64 248.8 151 72.8
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 3.4e-64 248.4 144 76.4
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 3.4e-64 248.4 144 76.4
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 3.4e-64 248.4 151 73.5
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 4.5e-64 248.1 144 76.4
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 4.5e-64 248.1 151 73.5
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 4.5e-64 248.1 144 77.1
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 5.8e-64 247.7 144 76.4
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 9.9e-64 246.9 151 70.9
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 3.8e-63 245.0 143 75.5
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 3.8e-63 245.0 143 75.5
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 4.9e-63 244.6 151 73.5
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.9e-63 244.6 140 79.3
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 8.4e-63 243.8 145 74.5
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 5.4e-62 241.1 142 76.8
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 5.4e-62 241.1 142 75.4
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 7.1e-62 240.7 146 74.7
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.2e-61 240.0 137 79.6
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 1.6e-61 239.6 141 75.9
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 2.7e-61 238.8 142 73.9
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 4.6e-61 238.0 149 73.2
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 3.0e-60 235.3 142 74.6
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 8.7e-60 233.8 146 71.2
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.5e-59 233.0 151 70.2
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.5e-59 233.0 142 71.8
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.5e-59 232.3 142 71.1
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 4.3e-59 231.5 142 73.2
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 4.3e-59 231.5 152 69.1
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 7.4e-59 230.7 138 74.6
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.3e-58 229.9 123 84.6
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 4.8e-58 228.0 142 73.2
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 1.4e-57 226.5 142 71.8
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 1.4e-57 226.5 135 74.8
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 9.0e-57 223.8 144 70.8
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 7.6e-56 220.7 151 65.6
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.4e-54 216.5 142 67.6
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 4.2e-54 214.9 151 68.9
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 8.1e-50 200.7 108 83.3
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 3.8e-47 191.8 151 56.3
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 1.4e-46 189.9 151 56.3
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 2.5e-46 189.1 151 60.9
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 9.3e-46 187.2 151 60.3
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.1e-41 173.7 122 65.6
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 1.5e-40 169.9 151 58.3
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.6e-40 169.1 123 63.4
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 1.4e-38 163.3 103 71.8
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.2e-37 160.2 149 53.7
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 1.2e-37 160.2 123 60.2
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 2.2e-34 149.4 152 48.7
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 3.7e-34 148.7 152 49.3
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 3.7e-34 148.7 123 57.7
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.4e-33 146.0 164 51.2
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 4.1e-33 145.2 164 51.2
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 6.9e-33 144.4 132 58.3
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 6.9e-33 144.4 151 49.0
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 8.5e-31 137.5 152 46.7
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.9e-30 136.3 89 73.0
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 3.6e-29 132.1 153 43.1
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.4e-25 119.4 66 83.3
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 2.1e-21 106.3 128 43.0
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 1.6e-16 90.1 61 67.2
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 8.0e-13 77.8 53 66.0
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 8.8e-12 74.3 119 36.1
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 2.0e-11 73.2 62 59.7
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 9.7e-11 70.9 58 60.3
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 2.0e-08 63.2 48 56.2
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 1.3e-07 60.5 42 66.7
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 1.9e-06 56.6 46 52.2


User provided reference genes

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