Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 4.9e-190 667.5 317 100.0
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 4.5e-143 511.5 320 80.6
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 2.4e-120 436.0 315 68.9
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.0e-119 433.0 315 69.2
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 2.5e-117 426.0 316 67.1
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.6e-116 423.3 316 66.1
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 1.5e-114 416.8 317 66.2
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.4e-112 410.2 320 65.0
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.9e-112 409.8 316 62.7
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.1e-111 406.4 315 63.2
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.7e-111 406.0 315 62.5
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 1.3e-110 403.7 315 63.5
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 2.3e-110 402.9 318 63.8
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 3.9e-110 402.1 315 61.9
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.1e-109 400.6 315 61.6
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.5e-109 400.2 316 62.7
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 3.3e-109 399.1 315 61.6
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.6e-108 396.7 315 60.6
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 2.8e-108 396.0 349 60.2
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.6e-108 395.6 317 60.9
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 4.7e-108 395.2 316 61.7
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.8e-107 393.3 319 62.4
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.3e-107 392.9 320 61.9
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.1e-107 392.5 317 60.3
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 4.0e-107 392.1 316 62.0
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 6.8e-107 391.3 315 61.3
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 2.0e-106 389.8 317 59.9
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 2.6e-106 389.4 322 60.2
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 3.4e-106 389.0 315 62.9
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 7.6e-106 387.9 315 60.0
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.6e-106 387.9 316 60.4
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.6e-106 387.9 316 60.4
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 9.9e-106 387.5 319 59.9
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.9e-105 385.2 316 61.1
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 6.4e-105 384.8 316 59.2
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 3.2e-104 382.5 316 59.8
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 3.2e-104 382.5 316 60.8
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 3.2e-104 382.5 322 58.7
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 5.4e-104 381.7 314 60.8
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.2e-103 380.6 321 60.4
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.2e-103 380.6 315 59.0
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.2e-103 380.6 316 60.4
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 1.3e-102 377.1 320 56.9
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.7e-102 376.7 316 59.5
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 2.3e-102 376.3 320 57.2
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 2.3e-102 376.3 324 57.1
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 3.9e-102 375.6 324 57.1
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 6.6e-102 374.8 316 60.8
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 6.6e-102 374.8 324 56.8
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.1e-101 374.0 320 56.9
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-101 374.0 324 56.8
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.9e-101 373.2 301 62.5
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 2.5e-101 372.9 324 56.8
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.2e-100 370.5 322 57.5
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 3.6e-100 369.0 316 57.9
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 4.7e-100 368.6 317 58.0
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 6.2e-100 368.2 320 55.3
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.4e-99 367.1 322 57.5
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.4e-99 367.1 322 58.7
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.8e-99 366.7 324 56.5
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 1.8e-99 366.7 320 55.9
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 2.4e-99 366.3 322 57.8
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 2.4e-99 366.3 322 58.4
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 4.0e-99 365.5 319 55.8
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 6.9e-99 364.8 322 56.5
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 1.2e-98 364.0 319 59.9
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.5e-98 363.6 321 56.1
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.5e-98 363.6 322 57.5
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 2.6e-98 362.8 320 55.0
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.6e-98 362.8 318 57.5
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 2.6e-98 362.8 321 56.7
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 3.4e-98 362.5 318 58.2
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 3.4e-98 362.5 320 55.0
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 3.4e-98 362.5 320 55.0
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 3.4e-98 362.5 320 55.0
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 5.8e-98 361.7 320 55.0
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 5.8e-98 361.7 319 56.7
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 5.8e-98 361.7 318 56.9
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 5.8e-98 361.7 323 57.0
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 7.6e-98 361.3 316 56.3
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-97 360.1 316 56.0
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 2.2e-97 359.8 321 56.7
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 2.9e-97 359.4 327 55.4
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 4.9e-97 358.6 329 55.0
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 6.4e-97 358.2 314 56.4
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 8.4e-97 357.8 411 48.2
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 1.1e-96 357.5 317 55.8
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 1.1e-96 357.5 324 55.6
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 1.4e-96 357.1 316 55.7
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.4e-96 356.3 267 63.7
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 4.2e-96 355.5 317 57.4
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 5.4e-96 355.1 317 54.3
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.4e-96 355.1 372 51.9
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 5.4e-96 355.1 320 54.4
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.6e-95 353.6 322 55.6
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 4.6e-95 352.1 323 54.5
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 5.1e-94 348.6 322 54.0
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.5e-93 347.1 314 56.7
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.5e-93 347.1 314 56.7
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 3.3e-93 345.9 318 56.0
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.6e-92 343.6 322 55.3
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 6.2e-92 341.7 308 57.1
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.1e-91 340.9 325 53.2
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 1.4e-91 340.5 272 62.1
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.4e-91 340.5 416 46.9
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 3.1e-91 339.3 309 56.6
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 9.0e-91 337.8 327 54.1
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 2.7e-87 326.2 323 52.9
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 1.8e-86 323.6 319 54.9
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.3e-81 307.4 312 53.2
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 1.7e-81 307.0 323 49.8
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 4.3e-77 292.4 316 49.7
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.3e-76 290.8 308 51.0
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.2e-74 284.3 256 55.9
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 9.3e-72 274.6 311 48.6
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 4.3e-69 265.8 251 56.6
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 6.3e-68 261.9 225 55.1
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 2.0e-66 256.9 247 51.8
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 6.5e-65 251.9 251 51.4
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 3.0e-62 243.0 317 41.6
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 1.8e-59 233.8 222 52.3
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 5.0e-57 225.7 321 39.9
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 9.4e-56 221.5 324 38.6
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.6e-55 220.7 291 43.3
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.3e-53 213.0 158 61.4
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.3e-53 213.0 321 38.9
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.7e-52 209.5 176 61.9
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.4e-50 203.0 179 54.7
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 5.9e-50 202.2 181 56.9
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 4.2e-48 196.1 176 55.7
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.9e-46 189.5 241 44.0
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.2e-46 189.1 141 61.7
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 2.2e-44 183.7 327 36.4
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 9.1e-43 178.3 140 57.9
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 2.0e-42 177.2 130 66.2
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 6.1e-39 165.6 152 50.0
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 5.3e-35 152.5 139 55.4
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 5.0e-33 146.0 144 50.0
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.1e-31 140.6 97 69.1
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 8.0e-31 138.7 98 67.3
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.0e-30 138.3 117 58.1
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 9.1e-27 125.2 255 35.3
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.4e-19 100.5 117 42.7
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 3.3e-08 63.5 35 71.4
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 1.4e-06 58.2 46 56.5
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 3.1e-06 57.0 55 40.0
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.8e-06 55.8 35 74.3


User provided reference genes

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