Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.2e-135 486.5 248 100.0
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 7.7e-114 414.1 313 73.8
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 1.9e-67 260.0 264 56.1
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 1.7e-60 236.9 266 54.9
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.2e-58 230.7 196 63.3
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 4.6e-58 228.8 196 63.3
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 1.8e-54 216.9 179 64.8
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 4.0e-54 215.7 267 49.8
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 2.0e-53 213.4 174 67.8
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 2.0e-53 213.4 165 70.3
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 3.4e-53 212.6 258 50.8
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 1.7e-52 210.3 254 51.2
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 2.9e-52 209.5 195 58.5
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 6.4e-52 208.4 196 60.7
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 7.1e-51 204.9 189 59.3
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 9.3e-51 204.5 199 57.3
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 1.6e-50 203.8 181 60.8
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 3.0e-49 199.5 175 63.4
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 3.0e-49 199.5 161 66.5
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 3.0e-49 199.5 183 60.1
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 8.7e-49 198.0 197 55.8
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 1.9e-48 196.8 176 61.9
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 3.3e-48 196.1 184 57.6
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 3.3e-48 196.1 193 57.0
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 4.3e-48 195.7 183 60.1
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 4.3e-48 195.7 198 54.0
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 5.6e-48 195.3 265 47.5
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 5.6e-48 195.3 177 61.0
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 5.6e-48 195.3 184 57.1
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 2.1e-47 193.4 177 59.9
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 2.8e-47 193.0 196 59.7
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 8.1e-47 191.4 184 58.2
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 1.8e-46 190.3 160 65.0
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 1.8e-46 190.3 194 55.7
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 4.0e-46 189.1 180 58.9
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 6.9e-46 188.3 183 57.4
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 9.0e-46 188.0 252 46.4
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 1.2e-45 187.6 177 57.1
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 1.2e-45 187.6 183 56.8
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.2e-45 187.6 183 56.8
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 1.5e-45 187.2 188 55.3
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 1.5e-45 187.2 193 55.4
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 2.0e-45 186.8 182 55.5
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 3.4e-45 186.0 178 57.3
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 7.6e-45 184.9 177 55.9
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 7.6e-45 184.9 176 57.4
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 9.9e-45 184.5 183 56.3
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.3e-44 184.1 183 56.8
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 1.3e-44 184.1 165 60.6
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 1.7e-44 183.7 182 56.0
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 2.2e-44 183.3 182 53.8
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.9e-44 183.0 194 53.6
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 2.9e-44 183.0 182 54.9
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 2.9e-44 183.0 196 54.1
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 3.8e-44 182.6 177 57.6
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 3.8e-44 182.6 177 57.6
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 6.4e-44 181.8 184 53.8
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 1.9e-43 180.3 169 59.8
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 3.2e-43 179.5 182 54.9
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 3.2e-43 179.5 182 54.9
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 4.2e-43 179.1 177 57.1
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 7.1e-43 178.3 163 58.9
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 9.3e-43 177.9 182 53.3
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 2.1e-42 176.8 192 52.1
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 1.8e-41 173.7 162 58.0
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 2.3e-41 173.3 212 49.1
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 3.0e-41 172.9 181 54.1
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 3.9e-41 172.6 174 53.4
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 3.9e-41 172.6 242 44.6
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 8.7e-41 171.4 160 60.0
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 1.9e-40 170.2 187 50.3
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 2.5e-40 169.9 174 54.0
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 3.3e-40 169.5 187 50.3
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 9.6e-40 167.9 182 50.0
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 9.6e-40 167.9 176 52.8
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 1.6e-39 167.2 161 57.8
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 1.6e-39 167.2 180 50.6
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 1.4e-38 164.1 174 52.9
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 1.4e-38 164.1 178 51.7
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 1.4e-38 164.1 193 49.2
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 6.9e-38 161.8 161 54.0
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 1.2e-37 161.0 195 49.7
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 4.5e-37 159.1 196 48.5
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 4.5e-37 159.1 195 49.2
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 4.5e-37 159.1 195 49.2
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 1.7e-36 157.1 185 49.7
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 1.4e-35 154.1 161 51.6
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 3.2e-35 152.9 193 47.7
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 5.5e-35 152.1 164 51.8
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 2.3e-33 146.7 141 56.0
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 3.0e-33 146.4 187 43.9
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 1.1e-27 127.9 125 56.8
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 3.2e-27 126.3 162 41.4
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 3.9e-25 119.4 167 40.7
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.1e-24 117.9 136 47.1
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 6.3e-23 112.1 249 32.1
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 1.1e-22 111.3 93 63.4
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.4e-22 110.9 119 52.1
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 3.1e-22 109.8 124 50.8
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 2.6e-21 106.7 94 55.3
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 3.4e-21 106.3 115 53.0
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.0e-20 104.8 105 52.4
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.1e-19 101.3 66 77.3
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.2e-18 97.8 71 74.6
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 1.6e-18 97.4 72 68.1
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 9.7e-16 88.2 71 62.0
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 5.3e-14 82.4 164 29.3
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 4.5e-13 79.3 181 28.7
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 3.8e-12 76.3 95 41.1
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 1.1e-11 74.7 101 44.6
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.4e-06 57.8 66 34.8


User provided reference genes

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