Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 4.9e-277 957.2 496 100.0
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 9.5e-273 943.0 496 99.0
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 6.3e-184 647.9 505 69.3
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 1.1e-180 637.1 506 68.8
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.8e-178 629.8 498 68.5
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 2.3e-178 629.4 502 68.3
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 1.2e-177 627.1 501 67.3
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 1.4e-175 620.2 505 66.1
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 4.1e-175 618.6 501 66.5
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 5.4e-175 618.2 521 65.6
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 3.5e-174 615.5 504 65.1
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.0e-173 614.0 498 67.1
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 1.7e-173 613.2 507 65.1
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 2.5e-172 609.4 501 65.5
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 9.5e-172 607.4 502 65.7
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 1.2e-171 607.1 501 65.5
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 1.2e-171 607.1 506 65.8
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 4.7e-171 605.1 498 65.9
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 6.2e-171 604.7 498 66.3
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 8.0e-171 604.4 501 65.1
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 1.0e-170 604.0 496 65.1
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 1.8e-170 603.2 502 65.1
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 1.8e-170 603.2 502 65.1
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 4.0e-170 602.1 498 65.5
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 5.8e-169 598.2 502 64.1
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 7.5e-169 597.8 496 64.5
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 3.7e-168 595.5 499 64.5
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 6.4e-168 594.7 502 65.5
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 1.1e-167 594.0 504 63.7
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 1.9e-167 593.2 498 64.1
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 1.9e-167 593.2 519 63.4
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 1.9e-167 593.2 499 63.7
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 9.2e-167 590.9 501 65.1
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 1.2e-166 590.5 495 63.8
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 1.6e-166 590.1 502 64.3
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 2.0e-166 589.7 488 64.3
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 2.7e-166 589.3 496 63.9
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 8.6e-165 584.3 502 62.9
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.9e-164 583.2 520 60.6
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 4.3e-164 582.0 496 62.5
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 1.2e-163 580.5 489 62.6
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 2.8e-163 579.3 489 63.8
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 6.2e-163 578.2 489 63.6
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 1.4e-162 577.0 502 62.7
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 1.8e-162 576.6 498 63.3
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 5.2e-162 575.1 473 66.2
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 1.2e-161 573.9 498 62.0
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 1.5e-161 573.5 496 63.5
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 2.0e-161 573.2 494 62.3
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 9.8e-161 570.9 501 61.9
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 4.9e-160 568.5 503 63.6
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 4.9e-160 568.5 499 61.1
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 3.2e-159 565.8 498 62.4
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 4.1e-159 565.5 495 62.0
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 1.6e-158 563.5 502 61.0
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 2.7e-158 562.8 497 62.4
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 1.7e-157 560.1 497 61.2
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 1.7e-157 560.1 499 61.7
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 1.1e-154 550.8 492 60.4
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 3.1e-154 549.3 493 60.2
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 1.3e-152 543.9 434 67.5
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 2.2e-152 543.1 497 59.2
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 1.9e-151 540.0 495 59.4
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 3.2e-151 539.3 495 58.8
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 7.1e-151 538.1 491 61.5
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 1.2e-150 537.3 495 58.8
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 3.5e-150 535.8 498 58.8
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 3.5e-150 535.8 443 66.4
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 1.3e-149 533.9 495 58.2
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 2.3e-149 533.1 493 58.0
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 3.9e-149 532.3 495 58.2
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 5.1e-149 531.9 495 58.8
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 6.6e-149 531.6 447 64.2
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 2.5e-148 529.6 495 57.6
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 3.3e-148 529.3 505 57.2
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 2.8e-147 526.2 513 55.0
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 4.0e-146 522.3 495 57.8
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 5.2e-146 521.9 444 63.7
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 2.6e-145 519.6 495 57.6
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 1.3e-144 517.3 502 58.0
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 3.8e-144 515.8 495 56.0
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 1.9e-143 513.5 495 56.8
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 1.9e-143 513.5 518 55.2
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 3.9e-141 505.8 501 56.1
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 1.9e-135 486.9 509 53.0
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 5.4e-135 485.3 348 74.1
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 1.6e-134 483.8 507 53.3
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 1.0e-133 481.1 406 62.8
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 1.3e-133 480.7 520 51.7
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 3.6e-131 472.6 502 52.0
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.4e-130 470.7 502 52.2
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 1.8e-130 470.3 412 62.9
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 1.3e-128 464.2 383 65.8
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 9.6e-124 448.0 355 68.2
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 2.1e-123 446.8 497 52.1
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 1.8e-122 443.7 493 50.3
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 4.8e-115 419.1 354 64.1
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 1.9e-111 407.1 508 45.5
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 1.5e-108 397.5 381 58.5
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 9.7e-108 394.8 345 61.7
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 1.9e-103 380.6 338 61.8
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 7.9e-102 375.2 546 44.7
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 2.5e-95 353.6 376 52.9
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 8.8e-93 345.1 302 61.6
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 7.5e-84 315.5 299 59.5
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.3e-83 314.7 365 49.9
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 8.0e-78 295.4 253 63.6
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 2.2e-75 287.3 518 35.1
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 2.3e-69 267.3 445 38.2
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 7.3e-63 245.7 383 42.8
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.9e-50 204.5 160 68.1
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 3.0e-48 197.2 527 29.0
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 3.0e-40 170.6 226 47.3
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 8.1e-38 162.5 518 29.2
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 4.0e-29 133.7 395 35.2
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 5.2e-29 133.3 144 55.6
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 1.5e-28 131.7 140 55.0
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 7.8e-25 119.4 532 24.6
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 3.6e-22 110.5 81 67.9
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 4.5e-20 103.6 98 56.1
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 1.7e-19 101.7 99 57.6
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-19 101.7 446 25.1
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 2.9e-19 100.9 418 23.4
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 3.8e-19 100.5 98 55.1
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 3.7e-14 84.0 116 42.2
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 6.9e-13 79.7 114 43.9
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 8.7e-08 62.8 89 41.6
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 2.1e-06 58.2 89 39.3


User provided reference genes

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