Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 2.0e-236 822.0 403 100.0
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 7.8e-132 474.6 420 62.6
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 6.8e-128 461.5 414 61.6
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 2.8e-121 439.5 425 57.4
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 4.2e-117 425.6 411 57.2
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 5.8e-111 405.2 336 62.2
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 2.4e-109 399.8 412 53.4
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 7.1e-109 398.3 411 55.0
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 9.6e-106 387.9 339 63.7
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.6e-105 387.1 358 57.3
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 2.6e-103 379.8 423 51.8
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 2.6e-103 379.8 411 51.8
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.4e-101 374.0 410 51.5
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 9.3e-101 371.3 345 55.7
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 1.6e-100 370.5 417 50.8
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 2.3e-99 366.7 410 52.4
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.0e-99 366.3 416 49.0
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 3.9e-99 365.9 407 50.1
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 3.9e-99 365.9 334 56.6
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 5.1e-99 365.5 418 48.3
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 5.1e-99 365.5 426 50.9
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 6.7e-99 365.2 411 53.5
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 1.1e-98 364.4 405 50.6
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 2.5e-98 363.2 350 53.7
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 3.3e-98 362.8 376 52.7
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 3.3e-98 362.8 327 56.9
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 4.3e-98 362.5 413 50.1
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 4.3e-98 362.5 337 54.9
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 7.4e-98 361.7 345 56.8
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 7.4e-98 361.7 412 53.2
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 1.3e-97 360.9 402 50.5
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 2.1e-97 360.1 411 50.4
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.7e-97 359.4 419 52.5
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.7e-97 359.4 417 48.0
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 8.2e-97 358.2 338 57.7
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 2.4e-96 356.7 325 56.6
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 2.6e-95 353.2 376 51.1
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 5.8e-95 352.1 356 52.2
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 7.6e-95 351.7 376 50.0
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 1.0e-94 351.3 333 54.4
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.7e-94 350.5 420 48.8
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.2e-94 350.1 401 48.6
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.2e-94 350.1 414 48.1
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 2.9e-94 349.7 474 45.1
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 2.9e-94 349.7 388 50.5
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 3.8e-94 349.4 343 53.1
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 6.5e-94 348.6 430 47.0
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 8.4e-94 348.2 322 57.5
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 1.1e-93 347.8 343 54.5
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.4e-93 347.4 414 48.1
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 1.9e-93 347.1 334 54.5
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.5e-93 346.7 438 50.2
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.6e-92 344.0 333 55.0
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 2.7e-92 343.2 397 47.1
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 4.6e-92 342.4 401 48.1
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 6.0e-92 342.0 327 58.1
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 6.7e-91 338.6 339 51.9
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 2.5e-90 336.7 371 51.8
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 7.4e-90 335.1 336 51.2
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.3e-89 334.3 401 47.6
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 1.8e-88 330.5 410 46.8
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 2.4e-88 330.1 408 44.4
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 4.1e-88 329.3 344 50.9
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 3.4e-87 326.2 339 51.0
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 5.9e-87 325.5 411 46.2
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.3e-86 324.3 339 48.7
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 1.3e-86 324.3 368 49.5
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.3e-86 324.3 412 44.7
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.7e-86 323.9 345 49.3
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 6.5e-86 322.0 342 47.7
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 1.1e-85 321.2 392 48.0
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 4.2e-85 319.3 345 48.1
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 5.5e-85 318.9 347 47.6
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 6.1e-84 315.5 413 45.3
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 1.8e-83 313.9 339 48.7
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 1.8e-83 313.9 345 49.9
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.8e-83 313.9 337 55.2
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 3.0e-83 313.2 345 47.8
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 3.0e-83 313.2 345 47.8
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 3.9e-83 312.8 343 48.1
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 6.7e-83 312.0 349 47.3
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 8.7e-83 311.6 412 44.9
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 1.5e-82 310.8 419 42.7
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 1.9e-82 310.5 346 47.1
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 3.3e-82 309.7 408 42.9
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 3.3e-82 309.7 399 45.9
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 4.3e-82 309.3 411 42.3
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 3.7e-81 306.2 399 46.4
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 8.2e-81 305.1 371 45.8
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.4e-80 304.3 413 41.9
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.8e-80 303.9 379 46.2
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 1.3e-78 297.7 308 49.0
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 2.9e-78 296.6 403 44.9
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 3.8e-78 296.2 331 48.9
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 5.0e-78 295.8 318 48.7
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.4e-77 294.3 328 49.4
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 7.2e-77 292.0 383 47.8
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 3.3e-74 283.1 398 44.2
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.2e-71 274.6 386 43.0
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 7.7e-71 271.9 326 44.8
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 8.5e-70 268.5 336 45.5
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.1e-69 268.1 357 43.4
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 1.9e-69 267.3 351 42.7
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 4.8e-65 252.7 366 41.5
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 2.9e-62 243.4 362 45.3
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.9e-61 240.7 241 52.3
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 4.2e-61 239.6 286 49.7
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 7.2e-61 238.8 341 41.9
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 3.0e-59 233.4 329 43.5
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 4.8e-57 226.1 245 48.2
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 3.5e-55 219.9 247 48.6
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 5.7e-50 202.6 275 45.5
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 7.7e-47 192.2 272 43.0
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 7.2e-45 185.7 190 50.5
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 1.2e-44 184.9 193 52.8
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 1.6e-39 167.9 307 35.2
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 5.2e-35 152.9 125 59.2
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 2.9e-33 147.1 122 57.4
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 2.3e-30 137.5 354 29.4
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 1.8e-27 127.9 176 39.2
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 3.4e-26 123.6 84 69.0
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 2.9e-25 120.6 321 28.3
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.6e-23 114.8 94 59.6
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.6e-23 113.2 68 73.5
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 7.8e-23 112.5 79 64.6
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 5.0e-22 109.8 118 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 1.9e-21 107.8 218 32.6
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 2.8e-20 104.0 60 75.0
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 3.6e-20 103.6 152 40.1
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 1.2e-18 98.6 195 32.8
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.4e-18 97.1 96 53.1
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 5.8e-18 96.3 189 33.9
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 7.1e-16 89.4 89 57.3
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 3.0e-14 84.0 299 22.4
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 6.2e-12 76.3 73 57.5
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 6.2e-12 76.3 319 24.8
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.2e-07 62.0 263 25.1


User provided reference genes

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