Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_2670F.1_g326650 Hydrangea macrophylla HOM05D006719 ORTHO05D007063 7.0e-46 187.6 147 100.0
CSS0008404 Camellia sinensis var. sinensis HOM05D006719 ORTHO05D007063 4.7e-34 148.3 147 80.3
CSS0019267 Camellia sinensis var. sinensis HOM05D006719 ORTHO05D007063 4.7e-34 148.3 147 80.3
vmacro08144 Vaccinium macrocarpon HOM05D006719 ORTHO05D007063 9.1e-30 134.0 148 78.4
vmacro22972 Vaccinium macrocarpon HOM05D006719 ORTHO05D007063 9.1e-30 134.0 148 78.4
Dinv44385 Davidia involucrata HOM05D006719 ORTHO05D007063 5.9e-29 131.3 151 83.4
Actinidia40259 Actinidia chinensis HOM05D006719 ORTHO05D007063 1.3e-28 130.2 147 80.3
Cfa015380 Carpinus fangiana HOM05D006719 ORTHO05D007063 3.1e-22 109.0 139 49.6
Oeu037752.1 Olea europaea HOM05D006719 ORTHO05D007063 1.2e-21 107.1 145 73.1
DCAR_030531 Daucus carota HOM05D006719 ORTHO05D007063 2.0e-21 106.3 144 65.3
Dinv29768 Davidia involucrata HOM05D001303 ORTHO05D001129 5.9e-21 104.8 129 78.3
COL.COLO4_13881 Corchorus olitorius HOM05D006719 ORTHO05D007063 1.1e-19 100.5 147 68.7
Thecc.04G284000 Theobroma cacao HOM05D006719 ORTHO05D007063 1.5e-19 100.1 145 69.0
CiPaw.02G083300 Carya illinoinensis HOM05D006719 ORTHO05D007063 3.3e-19 99.0 130 76.9
Duzib151G0940 Durio zibethinus HOM05D006719 ORTHO05D007063 9.5e-19 97.4 147 63.3
Peaxi162Scf00534g00017 Petunia axillaris HOM05D006719 ORTHO05D007063 1.6e-18 96.7 151 45.0
Potri.008G207500 Populus trichocarpa HOM05D006719 ORTHO05D007063 1.6e-18 96.7 132 70.5
Ciclev10006148m.g Citrus clementina HOM05D006719 ORTHO05D007063 6.1e-18 94.7 135 70.4
HanXRQChr08g0227651 Helianthus annuus HOM05D006719 ORTHO05D007063 6.1e-18 94.7 125 80.8
Potri.010G024600 Populus trichocarpa HOM05D006719 ORTHO05D007063 8.0e-18 94.4 144 70.8
GSVIVG01017752001 Vitis vinifera HOM05D006719 ORTHO05D007063 1.8e-17 93.2 153 70.6
MD16G1170500 Malus domestica HOM05D006719 ORTHO05D007063 2.3e-17 92.8 142 71.8
Manes.03G194500 Manihot esculenta HOM05D006719 ORTHO05D007063 2.3e-17 92.8 147 70.1
Sopen01g028510 Solanum pennellii HOM05D006719 ORTHO05D007063 3.0e-17 92.4 150 70.0
ECA233G1326 Erigeron canadensis HOM05D006719 ORTHO05D007063 8.9e-17 90.9 111 83.8
MD13G1169300 Malus domestica HOM05D006719 ORTHO05D007063 8.9e-17 90.9 133 69.9
Duzib212G0625 Durio zibethinus HOM05D006719 ORTHO05D007063 1.2e-16 90.5 147 63.3
Solyc01g066900.4 Solanum lycopersicum HOM05D006719 ORTHO05D007063 1.5e-16 90.1 150 66.7
Gorai.006G263400 Gossypium raimondii HOM05D006719 ORTHO05D007063 3.4e-16 89.0 148 62.8
Peaxi162Scf00024g00041 Petunia axillaris HOM05D006719 ORTHO05D007063 3.4e-16 89.0 139 71.2
Gohir.D10G170100 Gossypium hirsutum HOM05D006719 ORTHO05D007063 4.4e-16 88.6 136 71.3
Gorai.011G189600 Gossypium raimondii HOM05D006719 ORTHO05D007063 4.4e-16 88.6 136 71.3
Prupe.1G137900 Prunus persica HOM05D006719 ORTHO05D007063 5.7e-16 88.2 130 73.1
MSTRG.21797 Avicennia marina HOM05D006719 ORTHO05D007063 7.5e-16 87.8 132 63.6
PSO170G6252 Papaver somniferum HOM05D006719 ORTHO05D007063 9.8e-16 87.4 135 73.3
VMungo1309G0351 Vigna mungo HOM05D006719 ORTHO05D007063 9.8e-16 87.4 137 65.0
Lj6g0006694 Lotus japonicus HOM05D006719 ORTHO05D007063 2.8e-15 85.9 150 70.7
CiPaw.01G149100 Carya illinoinensis HOM05D006719 ORTHO05D007063 3.7e-15 85.5 148 42.6
Duzib052G0445 Durio zibethinus HOM05D006719 ORTHO05D007063 3.7e-15 85.5 147 68.7
Gohir.A10G163700 Gossypium hirsutum HOM05D006719 ORTHO05D007063 3.7e-15 85.5 134 73.9
Peaxi162Scf00024g00231 Petunia axillaris HOM05D006719 ORTHO05D007063 3.7e-15 85.5 124 75.8
Atru.chr4.2828 Acer truncatum HOM05D006719 ORTHO05D007063 8.3e-15 84.3 141 67.4
TAR362G0876 Trochodendron aralioides HOM05D006719 ORTHO05D007063 1.1e-14 84.0 124 76.6
Carub.0007s2587 Capsella rubella HOM05D006719 ORTHO05D007063 1.8e-14 83.2 152 64.5
RcHm_v2.0_Chr4g0422101 Rosa chinensis HOM05D006719 ORTHO05D007063 3.1e-14 82.4 125 73.6
Gohir.D09G240400 Gossypium hirsutum HOM05D006719 ORTHO05D007063 7.0e-14 81.3 109 75.2
Manes.15G012900 Manihot esculenta HOM05D006719 ORTHO05D007063 7.0e-14 81.3 133 72.9
PGSC0003DMG400011322 Solanum tuberosum HOM05D006719 ORTHO05D007063 9.2e-14 80.9 149 67.8
Gohir.A09G239500 Gossypium hirsutum HOM05D006719 ORTHO05D007063 1.2e-13 80.5 109 72.5
Nn4g25876 Nelumbo nucifera HOM05D006719 ORTHO05D007063 1.2e-13 80.5 138 61.6
QL06p008791 Quercus lobata HOM05D006719 ORTHO05D007063 1.6e-13 80.1 135 71.9
TAR365G1095 Trochodendron aralioides HOM05D006719 ORTHO05D007063 1.6e-13 80.1 136 71.3
Psat1g153440 Pisum sativum HOM05D006719 ORTHO05D007063 2.0e-13 79.7 145 67.6
PSO210G7501 Papaver somniferum HOM05D006719 ORTHO05D007063 2.7e-13 79.3 135 71.1
Phvul.009G247500 Phaseolus vulgaris HOM05D006719 ORTHO05D007063 2.7e-13 79.3 137 71.5
THA.LOC104821772 Tarenaya hassleriana HOM05D006719 ORTHO05D007063 2.3e-12 76.3 147 55.8
Actinidia01465 Actinidia chinensis HOM05D006719 ORTHO05D007063 1.1e-11 73.9 153 62.1
Aa31LG10G6320 Aethionema arabicum HOM05D006719 ORTHO05D007063 1.9e-11 73.2 144 65.3
Nn3g21430 Nelumbo nucifera HOM05D006719 ORTHO05D007063 1.9e-11 73.2 138 67.4
Cpa.g.sc16.165 Carica papaya HOM05D006719 ORTHO05D007063 2.5e-11 72.8 146 61.6
FvH4_4g17930 Fragaria vesca HOM05D006719 ORTHO05D007063 3.3e-11 72.4 151 64.9
FAN12G0915 Fragaria x ananassa HOM05D006719 ORTHO05D007063 4.3e-11 72.0 132 69.7
Ca_01942_v3 Cicer arietinum L. HOM05D006719 ORTHO05D007063 5.6e-11 71.6 131 68.7
FAN12G0931 Fragaria x ananassa HOM05D006719 ORTHO05D007063 9.5e-11 70.9 151 62.9
Sp7g14160 Schrenkiella parvula HOM05D006719 ORTHO05D007063 2.1e-10 69.7 146 62.3
FAN07G2874 Fragaria x ananassa HOM05D006719 ORTHO05D007063 4.7e-10 68.6 151 37.7
Lsat_1_v5_gn_6_15060 Lactuca sativa HOM05D006719 ORTHO05D007063 4.7e-10 68.6 123 74.0
SalBow2G1281 Salvia bowleyana HOM05D006719 ORTHO05D007063 4.7e-10 68.6 54 66.7
CANSAT78G1100 Cannabis sativa HOM05D006719 ORTHO05D007063 6.1e-10 68.2 54 70.4
CAN.G129.20 Capsicum annuum HOM05D006719 ORTHO05D007063 6.1e-10 68.2 137 65.7
THA.LOC104820261 Tarenaya hassleriana HOM05D006719 ORTHO05D007063 6.1e-10 68.2 144 64.6
BraA08t33189Z Brassica rapa HOM05D006719 ORTHO05D007063 1.4e-09 67.0 147 57.1
Thhalv10026485m.g Eutrema salsugineum HOM05D006719 ORTHO05D007063 1.4e-09 67.0 142 61.3
Glyma.15G147300 Glycine max HOM05D006719 ORTHO05D007063 1.4e-09 67.0 137 67.9
FAN17G0015 Fragaria x ananassa HOM05D006719 ORTHO05D007063 1.8e-09 66.6 158 36.7
Nitab4.5_0000960g0100 Nicotiana tabacum HOM05D006719 ORTHO05D007063 1.8e-09 66.6 152 63.8
Lalb_Chr15g0083521 Lupinus albus HOM05D006719 ORTHO05D007063 2.3e-09 66.2 137 67.9
CARHR290290 Cardamine hirsuta HOM05D006719 ORTHO05D007063 3.1e-09 65.9 129 67.4
Sed0003703 Sechium edule HOM05D006719 ORTHO05D007063 3.1e-09 65.9 137 67.2
Migut.G00270 Erythranthe guttata HOM05D006719 ORTHO05D007063 4.0e-09 65.5 110 66.4
MBI19_g20884_MAGBIO Magnolia biondii HOM05D006719 ORTHO05D007063 5.2e-09 65.1 163 55.8
TWI09G1121 Tripterygium wilfordii HOM05D006719 ORTHO05D007063 1.2e-08 63.9 136 67.6
unitig_37.g12394 Utricularia gibba HOM05D006719 ORTHO05D007063 1.5e-08 63.5 128 62.5
Aqoxy2G03000 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 2.6e-08 62.8 153 59.5
AL7G39510 Arabidopsis lyrata HOM05D006719 ORTHO05D007063 3.4e-08 62.4 143 62.9
SGA_v2.0_scaffold147G36286 Striga asiatica HOM05D006719 ORTHO05D007063 3.4e-08 62.4 54 64.8
Glyma.09G045300 Glycine max HOM05D006719 ORTHO05D007063 4.4e-08 62.0 137 66.4
TPR.G425 Trifolium pratense HOM05D006719 ORTHO05D007063 4.4e-08 62.0 136 65.4
Zm00001eb137600 Zea mays HOM05D006719 ORTHO05D007063 5.8e-08 61.6 122 49.2
Sed0000550 Sechium edule HOM05D006719 ORTHO05D007063 9.8e-08 60.8 139 66.2
Sabra10G0014400 Salix brachista HOM05D006719 ORTHO05D007063 1.3e-07 60.5 172 34.9
Cc03_g02020 Coffea canephora HOM05D006719 ORTHO05D007063 2.9e-07 59.3 43 69.8
BcaC07g37932 Brassica carinata HOM05D006719 ORTHO05D007063 3.7e-07 58.9 124 35.5
ClCG05G006040 Citrullus lanatus HOM05D006719 ORTHO05D007063 3.7e-07 58.9 135 66.7
Nitab4.5_0005076g0040 Nicotiana tabacum HOM05D006719 ORTHO05D007063 3.7e-07 58.9 148 63.5
arahy.Tifrunner.gnm1.ann1.WNX5DB Arachis hypogaea HOM05D006719 ORTHO05D007063 4.9e-07 58.5 145 60.7
BolC8t48317H Brassica oleracea HOM05D006719 ORTHO05D007063 6.4e-07 58.2 123 35.8
CsaV3_3G014580 Cucumis sativus L. HOM05D006719 ORTHO05D007063 6.4e-07 58.2 45 68.9
Hund20562 Selenicereus undatus HOM05D006719 ORTHO05D007063 6.4e-07 58.2 136 53.7
Sc19g0005170 Simmondsia chinensis HOM05D006719 ORTHO05D007063 6.4e-07 58.2 129 65.9
MELO3C006659.2 Cucumis melo HOM05D006719 ORTHO05D007063 1.4e-06 57.0 117 70.1
Medtr2g436860 Medicago truncatula HOM05D006719 ORTHO05D007063 1.4e-06 57.0 50 66.0
Ah.04g153870 Amaranthus hybridus HOM05D006719 ORTHO05D007063 1.9e-06 56.6 148 58.8
A08p11980 Brassica napus HOM05D006719 ORTHO05D007063 1.9e-06 56.6 54 59.3
TWI53G1176 Tripterygium wilfordii HOM05D006719 ORTHO05D007063 1.9e-06 56.6 136 66.9
HPP92_017216 Vanilla planifolia HOM05D006719 ORTHO05D007063 2.4e-06 56.2 132 40.9


User provided reference genes

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