Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_2629F.1_g325690 Hydrangea macrophylla HOM05D000493 ORTHO05D025270 1.3e-82 309.7 161 100.0
Hma1.2p1_0811F.1_g222090 Hydrangea macrophylla HOM05D000493 ORTHO05D001638 4.2e-44 181.8 138 77.5
Hma1.2p1_0218F.1_g092840 Hydrangea macrophylla HOM05D000493 ORTHO05D001638 3.1e-31 139.0 85 87.1
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 4.2e-28 128.6 77 89.6
Dinv29320 Davidia involucrata HOM05D000493 ORTHO05D001638 5.1e-26 121.7 137 55.5
Dinv24615 Davidia involucrata HOM05D000493 ORTHO05D025270 7.4e-25 117.9 105 63.8
MSTRG.12419 Avicennia marina HOM05D000493 ORTHO05D001638 2.0e-22 109.8 133 52.6
Oeu051593.1 Olea europaea HOM05D000493 ORTHO05D001638 1.4e-20 103.6 108 62.0
Peaxi162Scf00050g02219 Petunia axillaris HOM05D000493 ORTHO05D001638 1.6e-19 100.1 132 53.0
Solyc01g009040.4 Solanum lycopersicum HOM05D000493 ORTHO05D001638 1.0e-18 97.4 128 51.6
Sopen01g004530 Solanum pennellii HOM05D000493 ORTHO05D001638 3.9e-18 95.5 128 50.8
TAR369G0374 Trochodendron aralioides HOM05D000493 ORTHO05D001638 5.1e-18 95.1 144 45.8
MSTRG.17650 Avicennia marina HOM05D000493 ORTHO05D001638 5.7e-17 91.7 102 54.9
SGA_v2.0_scaffold29G12130 Striga asiatica HOM05D000493 ORTHO05D001638 6.3e-16 88.2 149 46.3
PGSC0003DMG401022702 Solanum tuberosum HOM05D000493 ORTHO05D001638 8.2e-16 87.8 129 49.6
CAN.G651.5 Capsicum annuum HOM05D000493 ORTHO05D001638 6.9e-15 84.7 122 50.8
CSS0014016 Camellia sinensis var. sinensis HOM05D000493 ORTHO05D001638 1.2e-14 84.0 137 45.3
TAR633G2808 Trochodendron aralioides HOM05D000493 ORTHO05D001638 1.2e-14 84.0 147 43.5
vmacro04085 Vaccinium macrocarpon HOM05D000493 ORTHO05D001638 1.2e-14 84.0 140 43.6
Nitab4.5_0002300g0070 Nicotiana tabacum HOM05D000493 ORTHO05D001638 5.9e-14 81.6 113 48.7
SalBow6G4709 Salvia bowleyana HOM05D000493 ORTHO05D001638 5.9e-14 81.6 93 55.9
GSVIVG01025781001 Vitis vinifera HOM05D000493 ORTHO05D001638 7.7e-14 81.3 97 50.5
Lj4A611T33 Lonicera japonica HOM05D000493 ORTHO05D001638 1.7e-13 80.1 94 55.3
MBI19_g18420_MAGBIO Magnolia biondii HOM05D000493 ORTHO05D001638 2.9e-13 79.3 130 43.1
Nn1g02900 Nelumbo nucifera HOM05D000493 ORTHO05D001638 2.9e-13 79.3 143 38.5
TAR636G1211 Trochodendron aralioides HOM05D000493 ORTHO05D001638 5.0e-13 78.6 137 40.9
Actinidia17967 Actinidia chinensis HOM05D000493 ORTHO05D001638 1.1e-12 77.4 121 45.5
QL01p016244 Quercus lobata HOM05D000493 ORTHO05D001638 1.1e-12 77.4 115 48.7
Sopen06g030020 Solanum pennellii HOM05D000493 ORTHO05D001638 1.4e-12 77.0 114 41.2
PGSC0003DMG400005948 Solanum tuberosum HOM05D000493 ORTHO05D001638 1.9e-12 76.6 118 43.2
Nitab4.5_0008332g0040 Nicotiana tabacum HOM05D000493 ORTHO05D001638 2.5e-12 76.3 127 41.7
SGA_v2.0_scaffold66G22282 Striga asiatica HOM05D000493 ORTHO05D001638 2.5e-12 76.3 121 44.6
Cc01_g07330 Coffea canephora HOM05D000493 ORTHO05D001638 3.2e-12 75.9 139 43.2
CiPaw.10G042600 Carya illinoinensis HOM05D000493 ORTHO05D001638 4.2e-12 75.5 149 45.6
Prupe.6G021300 Prunus persica HOM05D000493 ORTHO05D001638 4.2e-12 75.5 108 50.0
vmacro07767 Vaccinium macrocarpon HOM05D000493 ORTHO05D001638 4.2e-12 75.5 150 42.7
Nitab4.5_0000428g0070 Nicotiana tabacum HOM05D000493 ORTHO05D001638 5.5e-12 75.1 131 41.2
Migut.N02405 Erythranthe guttata HOM05D000493 ORTHO05D001638 9.4e-12 74.3 112 47.3
THA.LOC104809968 Tarenaya hassleriana HOM05D000493 ORTHO05D001638 9.4e-12 74.3 124 45.2
Atru.chr3.2544 Acer truncatum HOM05D000493 ORTHO05D001638 1.2e-11 73.9 108 47.2
Solyc06g073610.3 Solanum lycopersicum HOM05D000493 ORTHO05D001638 1.2e-11 73.9 130 36.9
Oeu044244.1 Olea europaea HOM05D000493 ORTHO05D001638 1.6e-11 73.6 132 44.7
QL07p012497 Quercus lobata HOM05D000493 ORTHO05D001638 1.6e-11 73.6 140 47.1
CAN.G65.207 Capsicum annuum HOM05D000493 ORTHO05D001638 2.1e-11 73.2 130 37.7
CiPaw.09G050000 Carya illinoinensis HOM05D000493 ORTHO05D001638 2.1e-11 73.2 148 42.6
Manes.08G062000 Manihot esculenta HOM05D000493 ORTHO05D001638 2.1e-11 73.2 136 43.4
Prupe.6G021200 Prunus persica HOM05D000493 ORTHO05D001638 2.1e-11 73.2 113 48.7
Actinidia37872 Actinidia chinensis HOM05D000493 ORTHO05D001638 2.7e-11 72.8 152 40.8
Cc06_g20060 Coffea canephora HOM05D000493 ORTHO05D001638 2.7e-11 72.8 106 47.2
Oeu009522.1 Olea europaea HOM05D000493 ORTHO05D001638 2.7e-11 72.8 103 45.6
Aqoxy1G00421 Aquilegia oxysepala HOM05D000493 ORTHO05D001638 3.6e-11 72.4 162 38.9
Actinidia24472 Actinidia chinensis HOM05D000493 ORTHO05D001638 8.0e-11 71.2 139 43.9
Glyma.14G037100 Glycine max HOM05D000493 ORTHO05D001638 8.0e-11 71.2 152 37.5
Aa31LG11G7130 Aethionema arabicum HOM05D000493 ORTHO05D001638 1.0e-10 70.9 117 41.9
Sopen10g028990 Solanum pennellii HOM05D000493 ORTHO05D001638 1.0e-10 70.9 128 38.3
TWI77G0802 Tripterygium wilfordii HOM05D000493 ORTHO05D001638 1.0e-10 70.9 149 42.3
Nitab4.5_0000123g0600 Nicotiana tabacum HOM05D000493 ORTHO05D001638 1.8e-10 70.1 127 40.2
DCAR_013652 Daucus carota HOM05D000493 ORTHO05D001638 2.3e-10 69.7 143 40.6
unitig_27.g25130 Utricularia gibba HOM05D000493 ORTHO05D001638 2.3e-10 69.7 133 41.4
CiPaw.14G123000 Carya illinoinensis HOM05D000493 ORTHO05D001638 3.0e-10 69.3 141 38.3
Lalb_Chr14g0365621 Lupinus albus HOM05D000493 ORTHO05D001638 3.0e-10 69.3 122 42.6
Phvul.001G119700 Phaseolus vulgaris HOM05D000493 ORTHO05D001638 3.0e-10 69.3 112 46.4
DCAR_020592 Daucus carota HOM05D000493 ORTHO05D001638 5.2e-10 68.6 123 43.9
QL01p016235 Quercus lobata HOM05D000493 ORTHO05D001638 5.2e-10 68.6 113 44.2
Ciclev10011642m.g Citrus clementina HOM05D000493 ORTHO05D001638 6.7e-10 68.2 92 50.0
Cpa.g.sc92.73 Carica papaya HOM05D000493 ORTHO05D001638 1.1e-09 67.4 103 48.5
CSS0015219 Camellia sinensis var. sinensis HOM05D000493 ORTHO05D001638 1.5e-09 67.0 43 72.1
Actinidia06982 Actinidia chinensis HOM05D000493 ORTHO05D055909 2.6e-09 66.2 73 60.3
PGR119G1423 Punica granatum HOM05D000493 ORTHO05D001638 2.6e-09 66.2 136 37.5
QL01p005914 Quercus lobata HOM05D000493 ORTHO05D001638 2.6e-09 66.2 141 37.6
TPR.G16426 Trifolium pratense HOM05D000493 ORTHO05D001638 2.6e-09 66.2 148 40.5
TWI53G1515 Tripterygium wilfordii HOM05D000493 ORTHO05D001638 2.6e-09 66.2 53 69.8
Manes.08G061900 Manihot esculenta HOM05D000493 ORTHO05D001638 4.4e-09 65.5 104 46.2
Potri.016G033000 Populus trichocarpa HOM05D000493 ORTHO05D001638 5.7e-09 65.1 122 45.9
arahy.Tifrunner.gnm1.ann1.US9TT4 Arachis hypogaea HOM05D000493 ORTHO05D001638 7.4e-09 64.7 132 38.6
Eucgr.J00667 Eucalyptus grandis HOM05D000493 ORTHO05D001638 7.4e-09 64.7 106 44.3
Solyc10g080950.2 Solanum lycopersicum HOM05D000493 ORTHO05D001638 7.4e-09 64.7 133 39.8
Sopen10g031460 Solanum pennellii HOM05D000493 ORTHO05D001638 7.4e-09 64.7 133 39.8
arahy.Tifrunner.gnm1.ann1.E7SATX Arachis hypogaea HOM05D000493 ORTHO05D001638 1.7e-08 63.5 132 38.6
EL10Ac3g07272 Beta vulgaris HOM05D000493 ORTHO05D001638 2.2e-08 63.2 118 44.1
DCAR_009126 Daucus carota HOM05D000493 ORTHO05D001638 2.2e-08 63.2 116 44.8
Lsat_1_v5_gn_3_117060 Lactuca sativa HOM05D000493 ORTHO05D001638 2.2e-08 63.2 86 46.5
SGA_v2.0_scaffold16G07589 Striga asiatica HOM05D000493 ORTHO05D001638 2.2e-08 63.2 123 37.4
CAN.G960.70 Capsicum annuum HOM05D000493 ORTHO05D001638 2.8e-08 62.8 104 42.3
Nitab4.5_0000062g0170 Nicotiana tabacum HOM05D000493 ORTHO05D001638 2.8e-08 62.8 125 44.8
SalBow3G4516 Salvia bowleyana HOM05D000493 ORTHO05D001638 2.8e-08 62.8 135 41.5
AUR62018380 Chenopodium quinoa HOM05D000493 ORTHO05D001638 3.7e-08 62.4 141 40.4
Lj1g0012471 Lotus japonicus HOM05D000493 ORTHO05D001638 3.7e-08 62.4 117 42.7
Lalb_Chr20g0108171 Lupinus albus HOM05D000493 ORTHO05D001638 3.7e-08 62.4 135 39.3
Sed0011583 Sechium edule HOM05D000493 ORTHO05D001638 3.7e-08 62.4 136 37.5
Hund24554 Selenicereus undatus HOM05D000493 ORTHO05D001638 3.7e-08 62.4 130 41.5
VMungo1383G0022 Vigna mungo HOM05D000493 ORTHO05D001638 3.7e-08 62.4 124 42.7
AUR62030282 Chenopodium quinoa HOM05D000493 ORTHO05D001638 4.8e-08 62.0 141 41.1
CAN.G128.87 Capsicum annuum HOM05D000493 ORTHO05D001638 6.3e-08 61.6 131 38.9
ECA240G1003 Erigeron canadensis HOM05D000493 ORTHO05D001638 6.3e-08 61.6 113 38.9
Lalb_Chr24g0400381 Lupinus albus HOM05D000493 ORTHO05D025270 6.3e-08 61.6 98 45.9
Potri.006G035200 Populus trichocarpa HOM05D000493 ORTHO05D001638 6.3e-08 61.6 53 69.8
PGR142G0214 Punica granatum HOM05D000493 ORTHO05D001638 6.3e-08 61.6 117 42.7
Duzib106G0592 Durio zibethinus HOM05D000493 ORTHO05D001638 8.2e-08 61.2 147 40.1
PGSC0003DMG400028099 Solanum tuberosum HOM05D000493 ORTHO05D001638 1.1e-07 60.8 134 38.8
Ah.04g150740 Amaranthus hybridus HOM05D000493 ORTHO05D001638 1.4e-07 60.5 141 39.0
AL6G16120 Arabidopsis lyrata HOM05D000493 ORTHO05D001638 1.4e-07 60.5 113 38.9
MBI13_g07376_MAGBIO Magnolia biondii HOM05D000493 ORTHO05D001638 1.4e-07 60.5 138 43.5
Lj1A1086T45 Lonicera japonica HOM05D000493 ORTHO05D001638 1.8e-07 60.1 122 39.3
Nitab4.5_0002606g0030 Nicotiana tabacum HOM05D000493 ORTHO05D001638 1.8e-07 60.1 139 42.4
SalBow6G5817 Salvia bowleyana HOM05D000493 ORTHO05D001638 1.8e-07 60.1 60 53.3
Thecc.05G122300 Theobroma cacao HOM05D000493 ORTHO05D001638 1.8e-07 60.1 118 42.4
CARHR206860 Cardamine hirsuta HOM05D000493 ORTHO05D001638 2.4e-07 59.7 126 35.7
RhsimUnG0209700 Rhododendron simsii HOM05D001918 ORTHO05D001931 2.4e-07 59.7 140 41.4
Haze_23064 Corylus avellana HOM05D000493 ORTHO05D001638 3.1e-07 59.3 142 36.6
Haze_23068 Corylus avellana HOM05D000493 ORTHO05D001638 3.1e-07 59.3 142 36.6
HanXRQChr13g0406641 Helianthus annuus HOM05D000493 ORTHO05D001638 3.1e-07 59.3 58 56.9
unitig_37.g12779 Utricularia gibba HOM05D000493 ORTHO05D001638 3.1e-07 59.3 150 32.7
Carub.0006s0503 Capsella rubella HOM05D000493 ORTHO05D001638 4.1e-07 58.9 53 58.5
GSVIVG01037397001 Vitis vinifera HOM05D000493 ORTHO05D001638 4.1e-07 58.9 139 36.0
Sabra06G0023500 Salix brachista HOM05D000493 ORTHO05D001638 5.3e-07 58.5 92 51.1
unitig_21.g20681 Utricularia gibba HOM05D000070 ORTHO05D007358 5.3e-07 58.5 130 31.5
Cfa009714 Carpinus fangiana HOM05D000493 ORTHO05D001638 7.0e-07 58.2 105 41.9
Duzib106G1101 Durio zibethinus HOM05D000493 ORTHO05D001638 7.0e-07 58.2 154 39.0
ECA240G4076 Erigeron canadensis HOM05D000493 ORTHO05D001638 7.0e-07 58.2 91 42.9
Medtr7g089080 Medicago truncatula HOM05D000493 ORTHO05D000008 7.0e-07 58.2 129 38.0
CsaV3_4G029350 Cucumis sativus L. HOM05D000493 ORTHO05D001638 9.1e-07 57.8 148 38.5
MD11G1027000 Malus domestica HOM05D000493 ORTHO05D001638 9.1e-07 57.8 129 33.3
Sp6g36740 Schrenkiella parvula HOM05D000493 ORTHO05D001638 9.1e-07 57.8 137 35.0
CANSAT64G2954 Cannabis sativa HOM05D000493 ORTHO05D001638 1.2e-06 57.4 128 35.9
AUR62043205 Chenopodium quinoa HOM05D000493 ORTHO05D001638 1.2e-06 57.4 132 39.4
Thhalv10013556m.g Eutrema salsugineum HOM05D000493 ORTHO05D001638 1.2e-06 57.4 142 33.8
FvH4_3g43340 Fragaria vesca HOM05D000493 ORTHO05D001638 1.2e-06 57.4 142 39.4
MBI14_g34602_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D025270 1.2e-06 57.4 59 61.0
Eucgr.K01668 Eucalyptus grandis HOM05D000493 ORTHO05D001638 1.6e-06 57.0 147 38.1
FAN11G2104 Fragaria x ananassa HOM05D000493 ORTHO05D001638 1.6e-06 57.0 142 38.7
COL.COLO4_19402 Corchorus olitorius HOM05D000493 ORTHO05D001638 2.0e-06 56.6 53 60.4
Haze_20259 Corylus avellana HOM05D000493 ORTHO05D001638 2.0e-06 56.6 148 37.8
Migut.J01628 Erythranthe guttata HOM05D000493 ORTHO05D001638 2.0e-06 56.6 89 42.7
Hund06519 Selenicereus undatus HOM05D000493 ORTHO05D001638 2.0e-06 56.6 115 40.0
EL10Ac3g07271 Beta vulgaris HOM05D000493 ORTHO05D001638 2.6e-06 56.2 130 36.2
Cfa018115 Carpinus fangiana HOM05D000493 ORTHO05D001638 2.6e-06 56.2 140 35.7
FAN21G2822 Fragaria x ananassa HOM05D000493 ORTHO05D001638 2.6e-06 56.2 141 38.3
ClCG04G005770 Citrullus lanatus HOM05D000493 ORTHO05D001638 3.5e-06 55.8 145 39.3
TPR.G16077 Trifolium pratense HOM05D000200 ORTHO05D000262 3.5e-06 55.8 146 38.4
QL01p005998 Quercus lobata HOM05D000493 ORTHO05D001638 4.5e-06 55.5 116 36.2
GSVIVG01032782001 Vitis vinifera HOM05D000493 ORTHO05D001638 4.5e-06 55.5 143 37.8
BcaB01g05737 Brassica carinata HOM05D000493 ORTHO05D001638 5.9e-06 55.1 51 62.7
Glyma.19G127200 Glycine max HOM05D000493 ORTHO05D001638 5.9e-06 55.1 124 42.7
HanXRQChr01g0008061 Helianthus annuus HOM05D000493 ORTHO05D001638 5.9e-06 55.1 114 38.6
HanXRQChr03g0091571 Helianthus annuus HOM05D000493 ORTHO05D001638 5.9e-06 55.1 113 38.9
AT3G11520 Arabidopsis thaliana HOM05D000493 ORTHO05D001638 7.7e-06 54.7 109 43.1
AT5G06150 Arabidopsis thaliana HOM05D000493 ORTHO05D001638 7.7e-06 54.7 113 36.3
Duzib128G0583 Durio zibethinus HOM05D000493 ORTHO05D001638 7.7e-06 54.7 95 42.1
FvH4_2g04990 Fragaria vesca HOM05D000493 ORTHO05D001638 7.7e-06 54.7 110 40.9
Glyma.03G123600 Glycine max HOM05D000493 ORTHO05D001638 7.7e-06 54.7 95 42.1


User provided reference genes

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