Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0388F.1_g142410 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 3.0e-141 505.4 288 100.0
Hma1.2p1_0388F.1_g142420 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 3.0e-141 505.4 288 100.0
Hma1.2p1_2617F.1_g325516 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 3.0e-141 505.4 288 100.0
Hma1.2p1_2617F.1_g325519 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 3.0e-141 505.4 288 100.0
Duzib192G0314 Durio zibethinus HOM05D000179 ORTHO05D000107 5.2e-53 212.2 302 49.3
CiPaw.02G139500 Carya illinoinensis HOM05D000179 ORTHO05D000107 1.5e-52 210.7 298 49.3
QL05p012055 Quercus lobata HOM05D000179 ORTHO05D000107 3.7e-51 206.1 281 48.4
Duzib235G0039 Durio zibethinus HOM05D000179 ORTHO05D000107 8.2e-51 204.9 298 48.7
Duzib160G0046 Durio zibethinus HOM05D000179 ORTHO05D000107 5.0e-48 195.7 306 48.0
Haze_15962 Corylus avellana HOM05D000179 ORTHO05D000107 1.1e-47 194.5 269 52.8
Cfa003577 Carpinus fangiana HOM05D000179 ORTHO05D000107 2.5e-47 193.4 267 49.4
Dinv30372 Davidia involucrata HOM05D000179 ORTHO05D000107 1.8e-45 187.2 318 45.9
TAR626G1656 Trochodendron aralioides HOM05D000179 ORTHO05D000107 1.5e-44 184.1 280 48.2
Cpa.g.sc25.46 Carica papaya HOM05D000179 ORTHO05D000107 2.6e-44 183.3 297 45.8
Gorai.009G141200 Gossypium raimondii HOM05D000179 ORTHO05D000107 2.0e-41 173.7 322 49.7
Gohir.D05G136900 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.7e-41 173.3 323 49.5
Potri.003G036900 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.7e-40 170.6 299 43.1
Nn8g38824 Nelumbo nucifera HOM05D000179 ORTHO05D000107 1.5e-39 167.5 304 48.4
MBI04_g34753_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 5.5e-39 165.6 292 45.2
Cc04_g01870 Coffea canephora HOM05D000179 ORTHO05D000107 2.3e-37 160.2 241 44.0
Manes.04G140300 Manihot esculenta HOM05D000179 ORTHO05D000107 5.2e-37 159.1 300 46.7
TAR624G0643 Trochodendron aralioides HOM05D000179 ORTHO05D000107 6.8e-37 158.7 296 45.9
CiPaw.01G224200 Carya illinoinensis HOM05D000179 ORTHO05D000107 4.4e-36 156.0 283 43.1
Aqoxy7G04022 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 2.2e-35 153.7 270 43.7
Manes.11G025600 Manihot esculenta HOM05D000179 ORTHO05D000107 1.1e-34 151.4 296 41.2
VMungo0331G1822 Vigna mungo HOM05D000179 ORTHO05D000107 1.1e-34 151.4 262 45.0
Glyma.07G009100 Glycine max HOM05D000179 ORTHO05D000107 1.4e-34 151.0 255 45.1
Manes.03G049100 Manihot esculenta HOM05D000179 ORTHO05D000107 1.8e-34 150.6 252 43.7
Lj5A44T114 Lonicera japonica HOM05D000179 ORTHO05D000107 9.2e-34 148.3 239 46.9
COL.COLO4_30667 Corchorus olitorius HOM05D000179 ORTHO05D000107 1.2e-33 147.9 237 46.4
Ciclev10025122m.g Citrus clementina HOM05D000179 ORTHO05D000107 1.6e-33 147.5 324 38.9
Dinv37909 Davidia involucrata HOM05D000179 ORTHO05D000107 2.0e-33 147.1 290 44.8
Phvul.010G138200 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 5.9e-33 145.6 240 43.8
Nitab4.5_0014751g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.3e-32 143.7 300 41.0
Ca_23325_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 2.9e-32 143.3 284 39.4
MBI01_g20334_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 3.8e-32 142.9 295 46.1
PGSC0003DMG400002495 Solanum tuberosum HOM05D000179 ORTHO05D000107 3.8e-32 142.9 284 42.3
Nitab4.5_0001295g0240 Nicotiana tabacum HOM05D000179 ORTHO05D000107 5.0e-32 142.5 250 45.2
Prupe.3G048600 Prunus persica HOM05D000179 ORTHO05D000107 2.5e-31 140.2 292 41.4
MSTRG.22576 Avicennia marina HOM05D000179 ORTHO05D000107 3.3e-31 139.8 264 44.3
Glyma.08G192300 Glycine max HOM05D000179 ORTHO05D000107 7.3e-31 138.7 248 46.0
CAN.G1389.28 Capsicum annuum HOM05D000179 ORTHO05D000107 1.6e-30 137.5 283 39.9
Nn6g35502 Nelumbo nucifera HOM05D000179 ORTHO05D000107 2.1e-30 137.1 285 39.6
Sopen03g040470 Solanum pennellii HOM05D000179 ORTHO05D000107 2.1e-30 137.1 286 41.3
vmacro18780 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 8.0e-30 135.2 309 39.5
Solyc03g121660.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 1.0e-29 134.8 285 40.7
Oeu026761.1 Olea europaea HOM05D000179 ORTHO05D000107 1.8e-29 134.0 311 42.1
CSS0010016 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 2.3e-29 133.7 300 43.0
MD09G1192300 Malus domestica HOM05D000179 ORTHO05D000107 1.5e-28 131.0 284 38.7
Actinidia21767 Actinidia chinensis HOM05D000179 ORTHO05D000107 2.0e-28 130.6 235 46.4
Lj3g0010441 Lotus japonicus HOM05D000179 ORTHO05D000107 4.4e-28 129.4 234 44.9
FvH4_6g33550 Fragaria vesca HOM05D000179 ORTHO05D000107 7.5e-28 128.6 305 38.4
FAN14G2605 Fragaria x ananassa HOM05D000179 ORTHO05D000107 7.5e-28 128.6 305 38.4
Dinv22886 Davidia involucrata HOM05D000179 ORTHO05D000107 1.3e-27 127.9 233 44.2
Glyma.15G024500 Glycine max HOM05D000179 ORTHO05D000107 2.2e-27 127.1 237 43.5
QL02p001033 Quercus lobata HOM05D000179 ORTHO05D000107 2.2e-27 127.1 248 41.1
Duzib187G1780 Durio zibethinus HOM05D000179 ORTHO05D000107 2.9e-27 126.7 258 39.5
FAN02G1544 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.9e-27 126.7 285 38.6
FAN05G4720 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.9e-27 126.7 285 38.2
Rhsim08G0234300 Rhododendron simsii HOM05D000179 ORTHO05D000107 1.1e-26 124.8 315 40.0
Potri.006G227600 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.4e-26 124.4 259 41.7
RcHm_v2.0_Chr2g0143461 Rosa chinensis HOM05D000179 ORTHO05D000107 1.4e-26 124.4 261 41.0
Actinidia32152 Actinidia chinensis HOM05D000179 ORTHO05D000107 1.8e-26 124.0 243 44.0
Glyma.13G349500 Glycine max HOM05D000179 ORTHO05D000107 1.8e-26 124.0 272 41.5
Lalb_Chr14g0372791 Lupinus albus HOM05D000179 ORTHO05D000107 1.8e-26 124.0 292 39.0
Thecc.09G055400 Theobroma cacao HOM05D000179 ORTHO05D000107 2.4e-26 123.6 314 36.3
Duzib150G1325 Durio zibethinus HOM05D000179 ORTHO05D000107 5.4e-26 122.5 243 42.0
CSS0019766 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.2e-25 121.3 230 42.6
Potri.018G052200 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.2e-25 121.3 249 43.0
MD17G1186000 Malus domestica HOM05D000179 ORTHO05D000107 1.6e-25 120.9 289 38.4
Hund20839 Selenicereus undatus HOM05D000179 ORTHO05D000107 2.0e-25 120.6 285 45.3
FAN09G2630 Fragaria x ananassa HOM05D000179 ORTHO05D000107 5.9e-25 119.0 284 37.7
MSTRG.10979 Avicennia marina HOM05D000179 ORTHO05D000107 1.7e-24 117.5 307 40.7
Medtr2g099990 Medicago truncatula HOM05D000179 ORTHO05D000107 3.0e-24 116.7 241 41.1
Medtr8g017210 Medicago truncatula HOM05D000179 ORTHO05D000107 6.6e-24 115.5 238 42.9
VMungo1080G0915 Vigna mungo HOM05D000179 ORTHO05D000107 6.6e-24 115.5 244 46.7
Gorai.011G064700 Gossypium raimondii HOM05D000179 ORTHO05D000107 1.9e-23 114.0 155 51.0
Lj3g0022046 Lotus japonicus HOM05D000179 ORTHO05D000107 5.6e-23 112.5 235 40.9
Gohir.D05G043200 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.6e-22 110.9 266 38.3
Psat4g188200 Pisum sativum HOM05D000179 ORTHO05D000107 1.6e-22 110.9 228 41.7
Sabra06G0176100 Salix brachista HOM05D000179 ORTHO05D000107 1.6e-22 110.9 255 40.0
Lalb_Chr22g0351811 Lupinus albus HOM05D000179 ORTHO05D000107 6.2e-22 109.0 263 40.3
Sabra18G0048300 Salix brachista HOM05D000179 ORTHO05D000107 6.2e-22 109.0 247 38.9
Gohir.A06G086800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 8.0e-22 108.6 248 41.9
Gohir.D06G086300 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.4e-21 107.8 250 42.8
Gorai.010G099600 Gossypium raimondii HOM05D000179 ORTHO05D000107 1.8e-21 107.5 250 42.0
Nitab4.5_0000255g0230 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.3e-21 107.1 305 33.8
Ciclev10007837m.g Citrus clementina HOM05D000179 ORTHO05D000107 6.8e-21 105.5 325 33.8
Gorai.009G044300 Gossypium raimondii HOM05D000179 ORTHO05D000107 8.9e-21 105.1 265 37.7
TPR.G19279 Trifolium pratense HOM05D000179 ORTHO05D000107 1.2e-20 104.8 291 35.7
TPR.G6585 Trifolium pratense HOM05D000179 ORTHO05D000107 2.6e-20 103.6 236 35.2
Gohir.A05G041500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 4.4e-20 102.8 263 37.6
Gohir.A10G058700 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.3e-19 101.3 155 49.0
Peaxi162Scf00038g01650 Petunia axillaris HOM05D000179 ORTHO05D000107 1.7e-19 100.9 270 34.1
Phvul.005G158600 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 2.2e-19 100.5 225 40.4
TAR383G0521 Trochodendron aralioides HOM05D000179 ORTHO05D000107 3.7e-19 99.8 160 52.5
GSVIVG01035391001 Vitis vinifera HOM05D000179 ORTHO05D000107 3.7e-19 99.8 221 38.5
Hma1.2p1_0055F.1_g031480 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 4.9e-19 99.4 227 37.9
Oeu003990.1 Olea europaea HOM05D000179 ORTHO05D000107 8.3e-19 98.6 232 38.8
TWI32G1280 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 8.3e-19 98.6 239 39.3
Eucgr.J02851 Eucalyptus grandis HOM05D000179 ORTHO05D000107 1.4e-18 97.8 285 41.8
Psat5g294040 Pisum sativum HOM05D000179 ORTHO05D000107 1.9e-18 97.4 241 41.1
TWI63G0629 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 2.4e-18 97.1 225 38.7
EL10Ac7g16348 Beta vulgaris HOM05D000179 ORTHO05D000107 3.2e-18 96.7 303 36.3
Gohir.A05G134900 Gossypium hirsutum HOM05D000179 ORTHO05D000107 5.4e-18 95.9 176 44.3
Hund18710 Selenicereus undatus HOM05D000179 ORTHO05D000107 5.4e-18 95.9 272 39.0
Thecc.06G112200 Theobroma cacao HOM05D000179 ORTHO05D000107 5.4e-18 95.9 173 45.1
Lalb_Chr24g0399701 Lupinus albus HOM05D000179 ORTHO05D000107 7.0e-18 95.5 256 36.3
MSTRG.11655 Avicennia marina HOM05D000179 ORTHO05D000107 9.2e-18 95.1 237 35.9
Lalb_Chr14g0366341 Lupinus albus HOM05D000179 ORTHO05D000107 1.2e-17 94.7 261 35.2
Lj9A519T89 Lonicera japonica HOM05D000179 ORTHO05D000107 2.7e-17 93.6 248 37.5
Actinidia01221 Actinidia chinensis HOM05D000179 ORTHO05D055366 3.5e-17 93.2 305 34.8
Hma1.2p1_0544F.1_g175730 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 1.0e-16 91.7 232 37.1
HPP92_026780 Vanilla planifolia HOM05D000179 ORTHO05D000107 1.7e-16 90.9 283 33.9
DCAR_016152 Daucus carota HOM05D000179 ORTHO05D000107 3.0e-16 90.1 217 39.2
TWI31G1001 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 3.9e-16 89.7 236 36.9
vmacro17025 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 3.9e-16 89.7 302 31.8
Haze_18170 Corylus avellana HOM05D000179 ORTHO05D000107 5.0e-16 89.4 289 33.2
Sed0011577 Sechium edule HOM05D000179 ORTHO05D000107 5.0e-16 89.4 225 39.1
ClCG09G000740 Citrullus lanatus HOM05D000179 ORTHO05D000107 6.6e-16 89.0 235 35.7
MSTRG.25954 Avicennia marina HOM05D000179 ORTHO05D000107 1.9e-15 87.4 242 36.4
arahy.Tifrunner.gnm1.ann1.IMP9EL Arachis hypogaea HOM05D000179 ORTHO05D000107 3.3e-15 86.7 237 35.9
THA.LOC104815639 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 5.6e-15 85.9 216 35.6
arahy.Tifrunner.gnm1.ann1.8W2D3B Arachis hypogaea HOM05D000179 ORTHO05D000107 7.3e-15 85.5 237 35.9
Cfa017966 Carpinus fangiana HOM05D000179 ORTHO05D000107 9.5e-15 85.1 312 32.4
Gohir.D10G060400 Gossypium hirsutum HOM05D000179 ORTHO05D000107 9.5e-15 85.1 100 55.0
PGR102G0676 Punica granatum HOM05D000179 ORTHO05D000107 2.3e-13 80.5 229 36.2
Atru.chr7.1093 Acer truncatum HOM05D000179 ORTHO05D000107 4.0e-13 79.7 227 35.7
Migut.A00127 Erythranthe guttata HOM05D000179 ORTHO05D000107 5.2e-13 79.3 232 41.4
Nitab4.5_0007697g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 5.2e-13 79.3 295 30.2
CDE05G2720 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 1.5e-12 77.8 223 30.0
Medtr1g016010 Medicago truncatula HOM05D000179 ORTHO05D000107 2.0e-12 77.4 287 31.0
Oeu009348.1 Olea europaea HOM05D000179 ORTHO05D000107 3.4e-12 76.6 234 32.5
Atru.chr1.3736 Acer truncatum HOM05D000179 ORTHO05D000107 4.4e-12 76.3 45 75.6
Peaxi162Scf00207g01365 Petunia axillaris HOM05D000179 ORTHO05D000107 5.8e-12 75.9 270 33.0
SalBow6G0364 Salvia bowleyana HOM05D000179 ORTHO05D000107 5.8e-12 75.9 300 32.3
SalBow6G2815 Salvia bowleyana HOM05D000179 ORTHO05D000107 5.8e-12 75.9 300 32.3
Lj5g0019576 Lotus japonicus HOM05D000179 ORTHO05D000107 9.8e-12 75.1 269 35.3
ClCG07G013780 Citrullus lanatus HOM05D000179 ORTHO05D000107 2.9e-11 73.6 335 30.7
SalBow7G0643 Salvia bowleyana HOM05D000179 ORTHO05D000107 4.9e-11 72.8 240 33.3
PGSC0003DMG400004882 Solanum tuberosum HOM05D000179 ORTHO05D000107 6.4e-11 72.4 293 33.8
CAN.G825.38 Capsicum annuum HOM05D000179 ORTHO05D000107 8.3e-11 72.0 311 31.8
Migut.I01032 Erythranthe guttata HOM05D000179 ORTHO05D000107 8.3e-11 72.0 216 36.1
CsaV3_7G034740 Cucumis sativus L. HOM05D000179 ORTHO05D000107 1.9e-10 70.9 226 35.0
Sc15g0000200 Simmondsia chinensis HOM05D000179 ORTHO05D000107 2.4e-10 70.5 106 49.1
Rhsim11G0043600 Rhododendron simsii HOM05D000179 ORTHO05D000107 4.1e-10 69.7 300 34.7
Carub.0003s1336 Capsella rubella HOM05D000179 ORTHO05D000107 5.4e-10 69.3 255 31.0
CsaV3_3G043830 Cucumis sativus L. HOM05D000179 ORTHO05D000107 5.4e-10 69.3 258 34.1
Rhsim12G0206500 Rhododendron simsii HOM05D001215 ORTHO05D008077 1.2e-09 68.2 270 31.5
Solyc06g062670.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 2.1e-09 67.4 298 33.2
arahy.Tifrunner.gnm1.ann1.J5699Y Arachis hypogaea HOM05D000179 ORTHO05D000107 3.5e-09 66.6 235 38.7
CANSAT56G3526 Cannabis sativa HOM05D000179 ORTHO05D000107 3.5e-09 66.6 323 28.8
Sed0025048 Sechium edule HOM05D000179 ORTHO05D000107 3.5e-09 66.6 279 29.4
EL10Ac2g03854 Beta vulgaris HOM05D000179 ORTHO05D000107 6.0e-09 65.9 238 34.5
Eucgr.C00661 Eucalyptus grandis HOM05D000179 ORTHO05D000107 7.8e-09 65.5 231 32.5
Sopen06g022130 Solanum pennellii HOM05D000179 ORTHO05D000107 7.8e-09 65.5 298 33.2
THA.LOC104810341 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 7.8e-09 65.5 292 27.4
Lsat_1_v5_gn_0_11100 Lactuca sativa HOM05D000179 ORTHO05D000107 1.0e-08 65.1 259 30.1
Sed0019919 Sechium edule HOM05D000179 ORTHO05D000107 2.3e-08 63.9 243 30.0
vmacro00137 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 2.3e-08 63.9 284 33.8
HPP92_003977 Vanilla planifolia HOM05D000179 ORTHO05D000107 5.1e-08 62.8 227 31.7
CSS0013504 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 8.6e-08 62.0 140 37.1
A05p35570 Brassica napus HOM05D000179 ORTHO05D000107 1.5e-07 61.2 281 29.2
Sc09g0009880 Simmondsia chinensis HOM05D000179 ORTHO05D000107 2.5e-07 60.5 215 34.9
arahy.Tifrunner.gnm1.ann1.2J1WAV Arachis hypogaea HOM05D000179 ORTHO05D000107 3.3e-07 60.1 268 31.3
MD08G1063600 Malus domestica HOM05D000179 ORTHO05D000107 3.3e-07 60.1 271 29.9
Sabra03G0023700 Salix brachista HOM05D000179 ORTHO05D000107 3.3e-07 60.1 113 43.4
COL.COLO4_21072 Corchorus olitorius HOM05D001513 ORTHO05D001494 4.3e-07 59.7 174 36.2
HanXRQChr13g0410571 Helianthus annuus HOM05D000179 ORTHO05D000107 4.3e-07 59.7 236 28.8
CARHR088580 Cardamine hirsuta HOM05D000179 ORTHO05D000107 7.3e-07 58.9 117 35.0
Aa31LG8G1000 Aethionema arabicum HOM05D000179 ORTHO05D000107 1.2e-06 58.2 48 60.4
AL3G25950 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 1.6e-06 57.8 256 28.5
MSTRG.9499 Avicennia marina HOM05D000179 ORTHO05D087879 1.6e-06 57.8 125 46.4
Dinv27996 Davidia involucrata HOM05D000179 ORTHO05D000107 1.6e-06 57.8 160 37.5
Prupe.1G410700 Prunus persica HOM05D000179 ORTHO05D000107 1.6e-06 57.8 261 30.7
Peaxi162Scf00327g00079 Petunia axillaris HOM05D000179 ORTHO05D000107 4.7e-06 56.2 258 32.2
arahy.Tifrunner.gnm1.ann1.951CXV Arachis hypogaea HOM05D000179 ORTHO05D000107 6.2e-06 55.8 230 37.4
THA.LOC104822634 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 6.2e-06 55.8 223 30.0


User provided reference genes

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