Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 6.9e-259 896.7 434 100.0
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.7e-220 769.2 372 100.0
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 2.8e-196 688.7 427 77.5
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 6.8e-182 641.0 444 69.6
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 2.3e-177 625.9 444 67.8
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.9e-176 622.9 442 67.9
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 4.7e-175 618.2 444 67.8
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 1.8e-174 616.3 444 67.1
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 5.2e-174 614.8 443 65.2
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 5.2e-174 614.8 444 67.1
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 2.0e-173 612.8 444 66.7
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 5.8e-173 611.3 444 65.8
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.7e-172 609.8 441 66.7
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 3.7e-172 608.6 444 66.4
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 3.7e-172 608.6 444 66.0
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.7e-172 608.6 444 64.2
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 4.9e-172 608.2 443 66.4
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 1.1e-171 607.1 444 64.9
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.4e-171 606.7 442 66.3
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.2e-170 603.6 444 66.9
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 2.0e-170 602.8 444 66.0
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 4.6e-170 601.7 438 66.0
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 7.8e-170 600.9 444 65.5
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.0e-169 600.5 440 65.5
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.7e-169 599.7 472 62.9
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.7e-169 599.7 444 66.9
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.7e-169 599.7 444 66.2
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.3e-169 599.4 444 65.1
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 5.0e-169 598.2 444 65.3
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.9e-168 596.3 438 65.3
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 4.3e-168 595.1 444 66.4
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 2.1e-167 592.8 444 65.3
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 6.2e-167 591.3 446 64.6
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 2.3e-166 589.3 454 62.3
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 5.2e-166 588.2 442 65.4
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 8.9e-166 587.4 444 64.2
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.5e-165 586.6 444 65.3
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 1.5e-165 586.6 444 64.6
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 3.4e-165 585.5 444 63.5
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 4.4e-165 585.1 444 64.4
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 5.8e-165 584.7 443 65.5
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.3e-164 583.6 443 63.0
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.3e-164 583.6 418 68.7
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 3.7e-164 582.0 443 64.3
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 6.4e-164 581.3 489 60.3
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.1e-163 580.5 446 65.5
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 4.1e-163 578.6 442 63.8
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 7.0e-163 577.8 440 63.0
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 2.1e-162 576.2 446 63.0
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 2.7e-162 575.9 443 63.4
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 3.5e-162 575.5 445 65.2
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 6.6e-161 571.2 445 63.4
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.1e-160 570.5 442 64.9
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 1.5e-160 570.1 446 62.8
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.5e-160 570.1 364 75.5
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.5e-160 570.1 442 62.7
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 3.3e-160 568.9 443 61.4
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.6e-159 566.6 442 62.2
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 2.1e-159 566.2 444 62.8
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.8e-159 565.8 441 63.0
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 2.8e-159 565.8 444 63.3
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.6e-159 565.5 441 62.8
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 8.1e-159 564.3 447 63.3
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.8e-158 563.1 441 62.6
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 3.1e-158 562.4 442 62.0
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 2.9e-156 555.8 446 61.7
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 2.4e-155 552.7 439 60.4
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 1.6e-154 550.1 439 60.1
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 2.1e-154 549.7 439 59.5
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 2.7e-154 549.3 418 65.6
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 4.6e-154 548.5 440 59.8
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 6.0e-154 548.1 440 60.7
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 4.3e-152 542.0 440 58.0
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.8e-150 536.6 454 57.9
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.5e-149 533.5 443 60.3
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 3.4e-149 532.3 443 59.6
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 2.9e-148 529.3 440 59.5
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 3.8e-148 528.9 437 62.2
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 6.4e-148 528.1 439 58.3
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 5.4e-147 525.0 442 60.9
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 3.5e-146 522.3 439 58.5
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 3.5e-146 522.3 439 58.5
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.1e-144 517.3 445 57.5
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.1e-144 517.3 445 57.5
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.5e-144 516.9 436 60.3
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.3e-144 515.8 365 66.6
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.0e-142 508.8 440 58.2
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.2e-141 507.3 400 62.0
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 1.3e-140 503.8 383 64.8
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.1e-139 500.7 442 55.9
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 1.4e-139 500.4 440 58.6
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.4e-139 499.6 367 67.8
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.6e-138 496.9 440 56.8
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.7e-138 496.1 434 57.1
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.3e-137 493.8 434 56.5
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 4.8e-135 485.3 444 54.5
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 3.1e-134 482.6 381 64.6
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.9e-132 476.1 446 54.3
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 6.4e-132 474.9 444 53.6
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 9.3e-131 471.1 434 56.5
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 8.7e-129 464.5 390 60.5
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 4.0e-126 455.7 444 53.4
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 4.0e-126 455.7 444 53.4
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 4.0e-126 455.7 444 53.4
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.3e-124 450.7 387 57.9
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 3.8e-124 449.1 461 49.9
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 3.5e-122 442.6 416 54.8
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 8.7e-121 438.0 322 64.6
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 9.6e-120 434.5 456 49.1
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 4.0e-118 429.1 427 53.4
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 4.5e-117 425.6 222 94.6
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.3e-116 424.1 447 50.1
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.0e-116 422.2 440 50.7
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.1e-99 367.9 307 60.3
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 2.5e-99 366.7 308 59.4
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 5.1e-97 359.0 445 45.8
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 9.7e-96 354.8 428 44.6
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 4.8e-95 352.4 444 43.9
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 6.3e-95 352.1 441 42.0
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 3.8e-92 342.8 230 71.7
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.5e-91 340.9 367 52.3
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 3.9e-89 332.8 436 42.4
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 6.7e-89 332.0 245 65.7
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 1.7e-87 327.4 423 40.9
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.4e-86 323.6 436 43.1
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.3e-84 317.8 445 43.6
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 1.3e-84 317.8 378 47.6
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.9e-76 290.0 184 75.0
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 6.5e-76 288.9 309 50.5
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 1.3e-60 238.0 509 31.2
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 1.8e-57 227.6 481 31.2
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.2e-55 220.7 148 66.2
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 2.0e-53 214.2 144 72.9
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.8e-33 147.9 164 47.6
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 2.4e-33 147.5 100 65.0
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 3.8e-31 140.2 496 28.2
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 9.6e-27 125.6 92 70.7
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 2.4e-22 110.9 100 53.0
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 6.6e-20 102.8 72 62.5
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 6.0e-13 79.7 389 24.7
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 3.3e-11 73.9 69 52.2
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 1.2e-08 65.5 112 34.8
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 3.4e-08 63.9 140 31.4
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.7e-07 61.6 146 28.1
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 2.2e-07 61.2 136 31.6
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.9e-07 60.8 114 30.7
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 2.9e-07 60.8 227 30.0
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 8.4e-07 59.3 144 28.5
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 1.1e-06 58.9 147 29.9
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 1.4e-06 58.5 155 31.0
CSS0005517 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.9e-06 58.2 33 81.8
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 2.5e-06 57.8 147 27.9
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 3.2e-06 57.4 136 29.4
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 5.5e-06 56.6 136 30.1
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 7.1e-06 56.2 122 31.1


User provided reference genes

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