Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 8.5e-57 223.4 109 100.0
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 2.0e-34 149.1 73 100.0
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 9.8e-21 103.6 66 78.8
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 1.2e-18 96.7 66 68.2
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 1.6e-18 96.3 72 66.7
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 3.5e-18 95.1 82 59.8
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 4.5e-18 94.7 66 71.2
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 4.5e-18 94.7 66 71.2
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.3e-17 93.2 67 71.6
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 1.7e-17 92.8 70 67.1
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 2.3e-17 92.4 72 66.7
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 3.8e-17 91.7 66 65.2
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 8.6e-17 90.5 70 65.7
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 1.5e-16 89.7 66 71.2
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 1.5e-16 89.7 63 66.7
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.5e-16 89.7 63 66.7
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.5e-16 89.7 63 66.7
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.5e-16 89.7 63 66.7
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.5e-16 89.7 63 66.7
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.5e-16 89.7 63 66.7
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 1.9e-16 89.4 68 61.8
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 2.5e-16 89.0 72 65.3
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 3.3e-16 88.6 64 65.6
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 4.3e-16 88.2 63 69.8
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 7.3e-16 87.4 62 71.0
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 1.2e-15 86.7 72 59.7
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 1.6e-15 86.3 63 66.7
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 2.1e-15 85.9 83 56.6
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 4.7e-15 84.7 66 62.1
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 4.7e-15 84.7 66 62.1
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 4.7e-15 84.7 61 63.9
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 1.0e-14 83.6 67 64.2
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 1.4e-14 83.2 66 60.6
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 1.8e-14 82.8 76 57.9
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 2.3e-14 82.4 67 64.2
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 3.0e-14 82.0 75 60.0
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 4.0e-14 81.6 64 64.1
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 5.2e-14 81.3 61 67.2
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 5.2e-14 81.3 66 60.6
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 6.8e-14 80.9 73 58.9
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 1.2e-13 80.1 76 53.9
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 1.5e-13 79.7 69 56.5
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 2.0e-13 79.3 73 57.5
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 2.6e-13 79.0 53 73.6
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 2.6e-13 79.0 53 73.6
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 3.4e-13 78.6 62 56.5
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 7.5e-13 77.4 63 60.3
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 7.5e-13 77.4 60 61.7
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 9.8e-13 77.0 77 54.5
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 1.3e-12 76.6 62 61.3
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 1.3e-12 76.6 70 58.6
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 1.7e-12 76.3 70 58.6
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 3.7e-12 75.1 60 65.0
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 4.9e-12 74.7 75 53.3
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 8.3e-12 73.9 60 61.7
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 3.2e-11 72.0 70 52.9
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 4.1e-11 71.6 62 58.1
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.7e-10 68.9 59 52.5
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 3.5e-10 68.6 49 69.4
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 3.5e-10 68.6 57 54.4
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 3.5e-10 68.6 65 55.4
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 6.0e-10 67.8 71 54.9
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 7.8e-10 67.4 59 50.8
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 1.3e-09 66.6 71 50.7
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 2.3e-09 65.9 47 66.0
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 2.3e-09 65.9 47 66.0
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 2.3e-09 65.9 47 66.0
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 2.3e-09 65.9 47 66.0
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 2.3e-09 65.9 47 66.0
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 6.6e-09 64.3 63 55.6
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 1.9e-08 62.8 43 69.8
Sc06g0000180 Simmondsia chinensis HOM05D004099 ORTHO05D004777 2.5e-08 62.4 92 38.0
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 9.5e-08 60.5 47 63.8
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 3.6e-07 58.5 43 65.1
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 3.6e-07 58.5 43 65.1
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 3.6e-07 58.5 43 67.4
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 4.7e-07 58.2 43 67.4
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 6.2e-07 57.8 43 65.1
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 6.2e-07 57.8 43 65.1
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 6.2e-07 57.8 43 65.1
Sopen08g022630 Solanum pennellii HOM05D004099 ORTHO05D004777 1.1e-06 57.0 83 41.0
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 1.4e-06 56.6 40 67.5
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 1.8e-06 56.2 57 43.9
SalBow5G0949 Salvia bowleyana HOM05D002019 ORTHO05D002150 1.8e-06 56.2 62 48.4
Medtr1g045430 Medicago truncatula HOM05D004099 ORTHO05D004777 2.3e-06 55.8 50 58.0
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 2.3e-06 55.8 50 54.0
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 3.1e-06 55.5 57 57.9
Solyc08g068970.3 Solanum lycopersicum HOM05D004099 ORTHO05D004777 3.1e-06 55.5 83 39.8
CBR_g74676 Chara braunii HOM05D002019 ORTHO05D010005 4.0e-06 55.1 42 64.3
Lj6g0022787 Lotus japonicus HOM05D002019 ORTHO05D002150 6.8e-06 54.3 95 35.8
PGSC0003DMG400035805 Solanum tuberosum HOM05D004099 ORTHO05D004777 6.8e-06 54.3 83 39.8
GSVIVG01015284001 Vitis vinifera HOM05D002019 ORTHO05D002150 6.8e-06 54.3 94 36.2
CAN.G1759.7 Capsicum annuum HOM05D002019 ORTHO05D002150 8.9e-06 53.9 55 54.5
PGR142G1562 Punica granatum HOM05D002019 ORTHO05D002150 8.9e-06 53.9 72 44.4


User provided reference genes

Program Settings