Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_2085F.1_g313670 Hydrangea macrophylla HOM05D006914 ORTHO05D008583 6.0e-52 207.2 104 100.0
CSS0049762 Camellia sinensis var. sinensis HOM05D006914 ORTHO05D008583 3.2e-45 184.9 103 87.4
Hund04582 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.1e-45 183.7 103 85.4
Nn8g40004 Nelumbo nucifera HOM05D006914 ORTHO05D008583 1.6e-44 182.6 103 84.5
Thecc.09G152600 Theobroma cacao HOM05D006914 ORTHO05D008583 2.7e-44 181.8 103 86.4
Ciclev10009995m.g Citrus clementina HOM05D006914 ORTHO05D008583 4.6e-44 181.0 103 86.4
GSVIVG01008452001 Vitis vinifera HOM05D006914 ORTHO05D008583 1.3e-43 179.5 101 88.1
Gohir.D08G256600 Gossypium hirsutum HOM05D006914 ORTHO05D008583 1.7e-43 179.1 103 84.5
Gorai.004G273700 Gossypium raimondii HOM05D006914 ORTHO05D008583 1.7e-43 179.1 103 84.5
Nitab4.5_0001448g0020 Nicotiana tabacum HOM05D006914 ORTHO05D008583 1.7e-43 179.1 104 82.7
Atru.chr7.325 Acer truncatum HOM05D006914 ORTHO05D008583 2.3e-43 178.7 101 86.1
EL10Ac3g05865 Beta vulgaris HOM05D006914 ORTHO05D008583 3.9e-43 177.9 103 81.6
Dinv41349 Davidia involucrata HOM05D006914 ORTHO05D008583 3.9e-43 177.9 98 88.8
AUR62015440 Chenopodium quinoa HOM05D006914 ORTHO05D008583 8.7e-43 176.8 103 80.6
ECA240G0809 Erigeron canadensis HOM05D006914 ORTHO05D008583 8.7e-43 176.8 102 84.3
Cfa020795 Carpinus fangiana HOM05D006914 ORTHO05D008583 1.9e-42 175.6 104 81.7
Lsat_1_v5_gn_7_49520 Lactuca sativa HOM05D006914 ORTHO05D008583 1.9e-42 175.6 103 82.5
COL.COLO4_23940 Corchorus olitorius HOM05D006914 ORTHO05D008583 2.5e-42 175.3 102 84.3
Nitab4.5_0009003g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 4.3e-42 174.5 104 78.8
HanXRQChr03g0066101 Helianthus annuus HOM05D006914 ORTHO05D008583 7.3e-42 173.7 103 82.5
AUR62002229 Chenopodium quinoa HOM05D006914 ORTHO05D008583 9.6e-42 173.3 102 79.4
FAN23G1758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 1.6e-41 172.6 103 82.5
Duzib150G1072 Durio zibethinus HOM05D006914 ORTHO05D008583 2.1e-41 172.2 102 82.4
Duzib187G0910 Durio zibethinus HOM05D006914 ORTHO05D008583 2.1e-41 172.2 102 82.4
MD15G1149500 Malus domestica HOM05D006914 ORTHO05D008583 2.8e-41 171.8 103 82.5
PGR102G2895 Punica granatum HOM05D006914 ORTHO05D008583 2.8e-41 171.8 103 81.6
RcHm_v2.0_Chr2g0085261 Rosa chinensis HOM05D006914 ORTHO05D008583 2.8e-41 171.8 103 82.5
Nitab4.5_0000233g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 3.6e-41 171.4 103 81.6
Potri.006G181400 Populus trichocarpa HOM05D006914 ORTHO05D008583 3.6e-41 171.4 103 82.5
TWI34G0278 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 3.6e-41 171.4 101 81.2
Prupe.7G265800 Prunus persica HOM05D006914 ORTHO05D008583 6.2e-41 170.6 103 82.5
FAN26G2758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 8.1e-41 170.2 103 81.6
CiPaw.15G165400 Carya illinoinensis HOM05D006914 ORTHO05D008583 1.1e-40 169.9 103 81.6
Cpa.g.sc46.184 Carica papaya HOM05D006914 ORTHO05D008583 1.4e-40 169.5 101 85.1
TWI63G1652 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 1.8e-40 169.1 99 82.8
Ah.13g066550 Amaranthus hybridus HOM05D006914 ORTHO05D008583 4.0e-40 167.9 104 74.0
MD02G1005200 Malus domestica HOM05D006914 ORTHO05D008583 9.0e-40 166.8 103 80.6
FvH4_1g00640 Fragaria vesca HOM05D006914 ORTHO05D008583 1.2e-39 166.4 103 80.6
QL02p093962 Quercus lobata HOM05D006914 ORTHO05D008583 1.2e-39 166.4 104 78.8
Aqoxy5G02159 Aquilegia oxysepala HOM05D006914 ORTHO05D008583 3.4e-39 164.9 102 80.4
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 4.5e-39 164.5 101 78.2
CANSAT56G0295 Cannabis sativa HOM05D006914 ORTHO05D008583 7.6e-39 163.7 100 78.0
Glyma.04G155300 Glycine max HOM05D006914 ORTHO05D008583 1.3e-38 162.9 102 78.4
Actinidia28379 Actinidia chinensis HOM05D006914 ORTHO05D008583 2.2e-38 162.2 96 85.4
Actinidia23563 Actinidia chinensis HOM05D006914 ORTHO05D008583 1.1e-37 159.8 94 83.0
MELO3C004120.2 Cucumis melo HOM05D006914 ORTHO05D008583 1.1e-37 159.8 103 76.7
ClCG02G014340 Citrullus lanatus HOM05D006914 ORTHO05D008583 1.4e-37 159.5 103 76.7
TAR383G0505 Trochodendron aralioides HOM05D006914 ORTHO05D008583 1.4e-37 159.5 91 86.8
PSO111G0010 Papaver somniferum HOM05D006914 ORTHO05D008583 3.2e-37 158.3 99 77.8
Peaxi162Scf00156g01316 Petunia axillaris HOM05D006914 ORTHO05D008583 3.2e-37 158.3 102 75.5
Glyma.06G225000 Glycine max HOM05D006914 ORTHO05D008583 4.2e-37 157.9 102 76.5
TPR.G25932 Trifolium pratense HOM05D006914 ORTHO05D008583 5.4e-37 157.5 102 74.5
Phvul.007G242700 Phaseolus vulgaris HOM05D006914 ORTHO05D008583 7.1e-37 157.1 100 76.0
Sed0012601 Sechium edule HOM05D006914 ORTHO05D008583 7.1e-37 157.1 103 74.8
Sed0026010 Sechium edule HOM05D006914 ORTHO05D008583 7.1e-37 157.1 103 75.7
Manes.14G142700 Manihot esculenta HOM05D006914 ORTHO05D008583 9.3e-37 156.8 99 77.8
Lalb_Chr11g0072501 Lupinus albus HOM05D006914 ORTHO05D008583 2.1e-36 155.6 102 74.5
VMungo0720G1978 Vigna mungo HOM05D006914 ORTHO05D008583 2.1e-36 155.6 102 72.5
MSTRG.10711 Avicennia marina HOM05D006914 ORTHO05D008583 4.6e-36 154.5 102 73.5
Ca_02367_v3 Cicer arietinum L. HOM05D006914 ORTHO05D008583 4.6e-36 154.5 97 77.3
Cc06_g14590 Coffea canephora HOM05D006914 ORTHO05D008583 1.0e-35 153.3 102 74.5
CsaV3_2G007660 Cucumis sativus L. HOM05D006914 ORTHO05D008583 1.9e-34 149.1 94 77.7
Medtr2g046160 Medicago truncatula HOM05D006914 ORTHO05D008583 2.5e-34 148.7 100 70.0
CDE05G0490 Ceratophyllum demersum HOM05D006914 ORTHO05D008583 3.3e-34 148.3 103 69.9
Migut.K00305 Erythranthe guttata HOM05D006914 ORTHO05D008583 7.4e-34 147.1 97 73.2
Oeu055276.1 Olea europaea HOM05D006914 ORTHO05D008583 9.6e-34 146.7 103 72.8
Psat1g017920 Pisum sativum HOM05D006914 ORTHO05D008583 9.6e-34 146.7 100 72.0
AT5G57860 Arabidopsis thaliana HOM05D006914 ORTHO05D008583 3.7e-33 144.8 91 74.7
Lj6g0027463 Lotus japonicus HOM05D006914 ORTHO05D008583 3.7e-33 144.8 102 68.6
ATR0763G197 Amborella trichopoda HOM05D006914 ORTHO05D008583 6.2e-33 144.1 98 72.4
Sp6g19550 Schrenkiella parvula HOM05D006914 ORTHO05D008583 6.2e-33 144.1 91 74.7
AL8G33910 Arabidopsis lyrata HOM05D006914 ORTHO05D008583 8.1e-33 143.7 90 75.6
Oeu021334.1 Olea europaea HOM05D006914 ORTHO05D008583 8.1e-33 143.7 102 70.6
Sopen05g034470 Solanum pennellii HOM05D006914 ORTHO05D008583 8.1e-33 143.7 89 75.3
Carub.0008s1839 Capsella rubella HOM05D006914 ORTHO05D008583 2.4e-32 142.1 91 73.6
CARHR271600 Cardamine hirsuta HOM05D006914 ORTHO05D008583 2.4e-32 142.1 91 74.7
C02p13800 Brassica napus HOM05D006914 ORTHO05D008583 4.0e-32 141.4 90 74.4
BolC2t07499H Brassica oleracea HOM05D006914 ORTHO05D008583 4.0e-32 141.4 90 74.4
Thhalv10015128m.g Eutrema salsugineum HOM05D006914 ORTHO05D008583 6.9e-32 140.6 91 72.5
Os03g0364000 Oryza sativa ssp. japonica HOM05D006914 ORTHO05D008583 2.6e-31 138.7 94 74.5
A03p12500 Brassica napus HOM05D006914 ORTHO05D008583 4.5e-31 137.9 91 71.4
TAR626G0439 Trochodendron aralioides HOM05D006914 ORTHO05D008583 7.6e-31 137.1 75 92.0
A02p08150 Brassica napus HOM05D006914 ORTHO05D008583 1.3e-30 136.3 91 71.4
BraA03t10565Z Brassica rapa HOM05D006914 ORTHO05D008583 1.3e-30 136.3 90 71.1
BolC3t13912H Brassica oleracea HOM05D006914 ORTHO05D008583 1.7e-30 136.0 90 71.1
Rhsim03G0258700 Rhododendron simsii HOM05D000079 ORTHO05D000211 1.7e-30 136.0 75 90.7
C09p49750 Brassica napus HOM05D006914 ORTHO05D008583 2.2e-30 135.6 91 70.3
unitig_748.g7196 Utricularia gibba HOM05D006914 ORTHO05D008583 4.9e-30 134.4 89 74.2
HPP92_020604 Vanilla planifolia HOM05D006914 ORTHO05D008583 1.1e-29 133.3 92 69.6
Aa31LG3G13700 Aethionema arabicum HOM05D006914 ORTHO05D008583 1.4e-29 132.9 91 70.3
Zm00001eb329210 Zea mays HOM05D006914 ORTHO05D008583 4.2e-29 131.3 93 66.7
vmacro06059 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 5.5e-29 131.0 75 86.7
PSO782G4630 Papaver somniferum HOM05D006914 ORTHO05D008583 2.7e-28 128.6 99 65.7
Haze_19153 Corylus avellana HOM05D006914 ORTHO05D008583 1.3e-27 126.3 75 81.3
PGSC0003DMG400023462 Solanum tuberosum HOM05D006914 ORTHO05D008583 7.4e-26 120.6 75 77.3
CAN.G694.81 Capsicum annuum HOM05D006914 ORTHO05D008583 9.6e-26 120.2 81 74.1
Eucgr.C02509 Eucalyptus grandis HOM05D006914 ORTHO05D008583 1.6e-25 119.4 75 77.3
BraA02t05889Z Brassica rapa HOM05D006914 ORTHO05D008583 8.2e-25 117.1 79 70.9
BcaB05g22379 Brassica carinata HOM05D006914 ORTHO05D008583 2.4e-24 115.5 90 65.6
SGA_v2.0_scaffold222G42803 Striga asiatica HOM05D006914 ORTHO05D008583 2.4e-24 115.5 76 77.6
Gohir.A08G236100 Gossypium hirsutum HOM05D006914 ORTHO05D008583 6.9e-24 114.0 63 85.7
arahy.Tifrunner.gnm1.ann1.6E7PQ4 Arachis hypogaea HOM05D006914 ORTHO05D008583 2.0e-23 112.5 74 74.3
Pp3c19_17380 Physcomitrium patens HOM05D006914 ORTHO05D008583 2.0e-23 112.5 99 59.6
arahy.Tifrunner.gnm1.ann1.S2MTQV Arachis hypogaea HOM05D006914 ORTHO05D008583 5.8e-23 110.9 74 73.0
AagrBONN_evm.TU.Sc2ySwM_362.2477 Anthoceros agrestis HOM05D006914 ORTHO05D008583 6.5e-22 107.5 92 62.0
Mapoly0004s0198 Marchantia polymorpha HOM05D006914 ORTHO05D008583 7.2e-21 104.0 84 64.3
SMO304G0019 Selaginella moellendorffii HOM05D006914 ORTHO05D008583 7.9e-20 100.5 73 68.5
Sc13g0007320 Simmondsia chinensis HOM05D006914 ORTHO05D008583 3.9e-19 98.2 63 77.8
CBR_g51779 Chara braunii HOM05D006914 ORTHO05D008583 9.7e-18 93.6 96 51.0
Pp3c17_5060 Physcomitrium patens HOM05D006914 ORTHO05D008583 3.1e-16 88.6 98 52.0
Haze_19154 Corylus avellana HOM05D002983 ORTHO05D003451 4.1e-16 88.2 62 72.6
AagrBONN_evm.TU.Sc2ySwM_228.3148 Anthoceros agrestis HOM05D006914 ORTHO05D008583 5.3e-16 87.8 78 55.1
Cre12.g554750 Chlamydomonas reinhardtii HOM05D006914 ORTHO05D008583 5.9e-15 84.3 85 51.8
Aa31LG1G14450 Aethionema arabicum HOM05D006914 ORTHO05D008583 3.8e-14 81.6 74 55.4
SHI02838 Sapria himalayana HOM05D006914 ORTHO05D008583 1.2e-12 76.6 89 46.1
BcaC04g19922 Brassica carinata HOM05D006914 ORTHO05D008583 7.9e-12 73.9 52 67.3
PRCOL_00002080 Prasinoderma coloniale HOM05D006914 ORTHO05D008583 7.9e-12 73.9 85 49.4
C08p16940 Brassica napus HOM05D006914 ORTHO05D008583 5.3e-08 61.2 37 73.0
MCO12G243 Micromonas commoda HOM05D006914 ORTHO05D008583 2.2e-06 55.8 81 43.2


User provided reference genes

Program Settings