Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 7.1e-36 153.3 72 100.0
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 6.7e-26 120.2 72 81.9
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 7.6e-22 106.7 70 70.0
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 6.1e-19 97.1 73 68.5
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 1.9e-17 92.0 66 63.6
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 2.5e-17 91.7 71 62.0
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 3.3e-17 91.3 61 65.6
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 4.3e-17 90.9 53 77.4
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 1.6e-16 89.0 55 72.7
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 1.6e-16 89.0 71 59.2
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 1.6e-16 89.0 57 71.9
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 2.2e-16 88.6 60 68.3
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 2.8e-16 88.2 53 73.6
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 3.7e-16 87.8 57 70.2
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 4.8e-16 87.4 55 72.7
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 4.8e-16 87.4 71 57.7
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 6.3e-16 87.0 62 69.4
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 6.3e-16 87.0 53 75.5
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 8.2e-16 86.7 56 69.6
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 1.1e-15 86.3 53 71.7
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 1.8e-15 85.5 61 63.9
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 1.8e-15 85.5 61 65.6
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 4.1e-15 84.3 65 60.0
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 4.1e-15 84.3 66 59.1
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 4.1e-15 84.3 66 59.1
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 6.9e-15 83.6 66 60.6
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 6.9e-15 83.6 59 66.1
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 6.9e-15 83.6 53 69.8
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 9.0e-15 83.2 54 70.4
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 1.2e-14 82.8 60 61.7
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 1.2e-14 82.8 72 54.2
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 1.5e-14 82.4 53 71.7
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 1.5e-14 82.4 54 72.2
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.5e-14 82.4 66 60.6
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 1.5e-14 82.4 53 73.6
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 2.0e-14 82.0 55 67.3
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 2.0e-14 82.0 55 67.3
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 2.0e-14 82.0 58 63.8
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 2.0e-14 82.0 65 60.0
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 2.0e-14 82.0 55 69.1
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 2.0e-14 82.0 71 59.2
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 2.0e-14 82.0 61 65.6
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 2.6e-14 81.6 53 71.7
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 2.6e-14 81.6 63 65.1
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 2.6e-14 81.6 53 67.9
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 2.6e-14 81.6 53 67.9
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 3.4e-14 81.3 53 73.6
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 3.4e-14 81.3 53 73.6
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 3.4e-14 81.3 53 71.7
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 3.4e-14 81.3 56 66.1
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 4.5e-14 80.9 53 67.9
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 5.9e-14 80.5 67 52.2
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 5.9e-14 80.5 54 66.7
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 7.7e-14 80.1 61 57.4
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 1.0e-13 79.7 53 73.6
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 1.0e-13 79.7 53 71.7
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 1.0e-13 79.7 54 70.4
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 1.3e-13 79.3 56 73.2
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 1.3e-13 79.3 53 69.8
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 1.3e-13 79.3 54 64.8
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 1.3e-13 79.3 53 71.7
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 1.3e-13 79.3 53 71.7
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 1.7e-13 79.0 70 57.1
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.7e-13 79.0 54 64.8
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 1.7e-13 79.0 75 56.0
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 2.2e-13 78.6 72 54.2
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 2.2e-13 78.6 53 73.6
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 2.9e-13 78.2 59 62.7
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 2.9e-13 78.2 53 71.7
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 3.8e-13 77.8 72 56.9
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 3.8e-13 77.8 53 69.8
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 3.8e-13 77.8 53 71.7
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 5.0e-13 77.4 71 56.3
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 8.5e-13 76.6 57 63.2
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 8.5e-13 76.6 53 67.9
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 1.1e-12 76.3 55 61.8
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 1.1e-12 76.3 53 69.8
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 1.1e-12 76.3 60 58.3
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.1e-12 76.3 72 51.4
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 1.4e-12 75.9 53 67.9
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 1.4e-12 75.9 53 66.0
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 1.9e-12 75.5 53 67.9
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.9e-12 75.5 62 56.5
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 1.9e-12 75.5 60 61.7
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 2.5e-12 75.1 57 63.2
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 2.5e-12 75.1 65 53.8
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 3.2e-12 74.7 58 60.3
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 5.5e-12 73.9 54 64.8
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 7.2e-12 73.6 62 54.8
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 9.4e-12 73.2 53 69.8
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 9.4e-12 73.2 54 64.8
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.6e-11 72.4 60 56.7
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 2.1e-11 72.0 57 63.2
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 2.7e-11 71.6 55 60.0
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 2.7e-11 71.6 55 61.8
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 2.7e-11 71.6 60 55.0
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 3.6e-11 71.2 53 64.2
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 4.6e-11 70.9 61 55.7
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 4.6e-11 70.9 55 61.8
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 4.6e-11 70.9 55 61.8
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 4.6e-11 70.9 55 61.8
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 4.6e-11 70.9 61 55.7
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 6.1e-11 70.5 70 55.7
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 7.9e-11 70.1 55 61.8
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 7.9e-11 70.1 59 61.0
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 1.0e-10 69.7 53 62.3
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 1.0e-10 69.7 53 62.3
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 2.3e-10 68.6 56 58.9
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 2.3e-10 68.6 62 54.8
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 3.9e-10 67.8 58 55.2
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 5.1e-10 67.4 55 61.8
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.1e-09 66.2 57 57.9
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.5e-09 65.9 57 56.1
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 1.5e-09 65.9 53 58.5
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.0e-09 65.5 53 56.6
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 3.3e-09 64.7 48 62.5
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 3.3e-09 64.7 53 60.4
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 4.3e-09 64.3 80 43.8
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 7.4e-09 63.5 39 71.8
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 2.2e-08 62.0 39 69.2
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 2.2e-08 62.0 66 54.5
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 2.2e-08 62.0 39 69.2
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 2.8e-08 61.6 39 69.2
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 2.8e-08 61.6 64 48.4
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 3.7e-08 61.2 59 49.2
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 6.3e-08 60.5 58 51.7
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 8.2e-08 60.1 52 55.8
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 1.1e-07 59.7 53 50.9
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 2.4e-07 58.5 38 68.4
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 2.6e-06 55.1 55 49.1
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 3.4e-06 54.7 53 50.9


User provided reference genes

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