Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_1502F.1_g287410 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 2.3e-232 808.5 401 100.0
Hma1.2p1_2026F.1_g311626 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 2.3e-232 808.5 401 100.0
CSS0004005 Camellia sinensis var. sinensis HOM05D003582 ORTHO05D004789 6.4e-118 428.3 553 49.4
CSS0033422 Camellia sinensis var. sinensis HOM05D003582 ORTHO05D004789 6.4e-118 428.3 553 49.4
Actinidia17602 Actinidia chinensis HOM05D003582 ORTHO05D004789 1.1e-117 427.6 552 50.4
Hma1.2p1_0069F.1_g037480 Hydrangea macrophylla HOM05D003582 ORTHO05D004789 9.2e-117 424.5 552 49.6
Rhsim08G0076400 Rhododendron simsii HOM05D003582 ORTHO05D004789 1.7e-115 420.2 551 48.6
vmacro18132 Vaccinium macrocarpon HOM05D003582 ORTHO05D004789 3.3e-114 416.0 556 48.4
Cpa.g.sc14.212 Carica papaya HOM05D003582 ORTHO05D004789 2.8e-113 412.9 548 48.5
Cc00_g14200 Coffea canephora HOM05D003582 ORTHO05D004789 4.4e-111 405.6 540 48.0
Oeu021205.1 Olea europaea HOM05D003582 ORTHO05D004789 1.7e-110 403.7 541 48.1
Sabra17G0085700 Salix brachista HOM05D003582 ORTHO05D004789 9.2e-109 397.9 538 47.2
GSVIVG01036556001 Vitis vinifera HOM05D003582 ORTHO05D004789 1.6e-108 397.1 549 47.7
Migut.H00593 Erythranthe guttata HOM05D003582 ORTHO05D004789 2.1e-108 396.7 502 49.8
Potri.017G099200 Populus trichocarpa HOM05D003582 ORTHO05D004789 7.8e-108 394.8 540 47.0
Cfa007687 Carpinus fangiana HOM05D003582 ORTHO05D004789 1.3e-107 394.0 538 46.5
MD09G1073500 Malus domestica HOM05D003582 ORTHO05D004789 5.1e-107 392.1 538 47.2
Thecc.04G104800 Theobroma cacao HOM05D003582 ORTHO05D004789 8.6e-107 391.3 536 48.5
Prupe.3G249800 Prunus persica HOM05D003582 ORTHO05D004789 1.5e-106 390.6 538 47.0
Lj4A122T65 Lonicera japonica HOM05D003582 ORTHO05D004789 1.9e-106 390.2 544 47.6
Nitab4.5_0000154g0240 Nicotiana tabacum HOM05D003582 ORTHO05D004789 3.3e-106 389.4 542 46.3
CiPaw.03G083900 Carya illinoinensis HOM05D003582 ORTHO05D004789 5.6e-106 388.7 542 46.9
Duzib138G0134 Durio zibethinus HOM05D003582 ORTHO05D004789 5.6e-106 388.7 546 47.3
Potri.004G117900 Populus trichocarpa HOM05D003582 ORTHO05D004789 7.3e-106 388.3 543 47.1
RcHm_v2.0_Chr2g0165001 Rosa chinensis HOM05D003582 ORTHO05D004789 9.6e-106 387.9 539 46.4
MD17G1065000 Malus domestica HOM05D003582 ORTHO05D004789 3.6e-105 386.0 538 46.1
Manes.01G103000 Manihot esculenta HOM05D003582 ORTHO05D004789 6.2e-105 385.2 579 45.9
ECA232G0785 Erigeron canadensis HOM05D003582 ORTHO05D004789 1.4e-104 384.0 543 46.2
TAR371G0699 Trochodendron aralioides HOM05D003582 ORTHO05D004789 1.4e-104 384.0 504 47.6
Sabra04G0071000 Salix brachista HOM05D003582 ORTHO05D004789 1.8e-104 383.6 599 43.6
Migut.O00385 Erythranthe guttata HOM05D003582 ORTHO05D004789 4.0e-104 382.5 545 46.4
Gorai.001G207700 Gossypium raimondii HOM05D003582 ORTHO05D004789 4.0e-104 382.5 509 49.3
Nitab4.5_0001434g0060 Nicotiana tabacum HOM05D003582 ORTHO05D004789 4.0e-104 382.5 518 47.7
Actinidia26267 Actinidia chinensis HOM05D003582 ORTHO05D004789 5.2e-104 382.1 522 48.5
TWI32G0037 Tripterygium wilfordii HOM05D003582 ORTHO05D004789 5.2e-104 382.1 549 45.9
Duzib133G0617 Durio zibethinus HOM05D003582 ORTHO05D004789 6.9e-104 381.7 541 47.5
Nn3g17508 Nelumbo nucifera HOM05D003582 ORTHO05D004789 6.9e-104 381.7 543 46.4
QL02p066091 Quercus lobata HOM05D003582 ORTHO05D004789 9.9e-103 377.9 536 45.9
Glyma.19G033700 Glycine max HOM05D003582 ORTHO05D004789 2.9e-102 376.3 558 45.5
Manes.02G058750 Manihot esculenta HOM05D003582 ORTHO05D004789 4.9e-102 375.6 570 44.2
HanXRQChr14g0452431 Helianthus annuus HOM05D003582 ORTHO05D004789 6.4e-102 375.2 532 46.2
Ciclev10011357m.g Citrus clementina HOM05D003582 ORTHO05D004789 1.1e-101 374.4 537 46.4
VMungo0464G0741 Vigna mungo HOM05D003582 ORTHO05D004789 2.4e-101 373.2 558 45.2
CAN.G497.77 Capsicum annuum HOM05D003582 ORTHO05D004789 5.4e-101 372.1 513 47.8
Gohir.D11G165800 Gossypium hirsutum HOM05D003582 ORTHO05D004789 7.1e-101 371.7 505 48.7
Glyma.13G053100 Glycine max HOM05D003582 ORTHO05D004789 9.3e-101 371.3 559 45.4
Gorai.007G176800 Gossypium raimondii HOM05D003582 ORTHO05D004789 2.1e-100 370.2 505 48.7
Phvul.004G041500 Phaseolus vulgaris HOM05D003582 ORTHO05D004789 3.5e-100 369.4 525 47.2
Eucgr.J01408 Eucalyptus grandis HOM05D003582 ORTHO05D004789 6.0e-100 368.6 550 45.8
Gohir.A11G159700 Gossypium hirsutum HOM05D003582 ORTHO05D004789 1.0e-99 367.9 505 48.5
HanXRQChr15g0489031 Helianthus annuus HOM05D003582 ORTHO05D004789 1.7e-99 367.1 548 44.5
TWI60G0725 Tripterygium wilfordii HOM05D003582 ORTHO05D004789 2.3e-99 366.7 544 44.9
PGR042G1977 Punica granatum HOM05D003582 ORTHO05D004789 3.9e-99 365.9 548 44.3
Nn4g23497 Nelumbo nucifera HOM05D003582 ORTHO05D004789 1.1e-98 364.4 539 44.5
Peaxi162Scf01619g00009 Petunia axillaris HOM05D003582 ORTHO05D004789 1.1e-98 364.4 476 48.1
DCAR_025450 Daucus carota HOM05D003582 ORTHO05D004789 1.9e-98 363.6 541 45.8
CANSAT64G2522 Cannabis sativa HOM05D003582 ORTHO05D004789 2.5e-98 363.2 508 46.9
PSO478G3099 Papaver somniferum HOM05D003582 ORTHO05D004789 3.3e-98 362.8 547 45.2
Lj2g0024434 Lotus japonicus HOM05D003582 ORTHO05D004789 4.3e-98 362.5 557 44.0
PSO017G5930 Papaver somniferum HOM05D003582 ORTHO05D004789 5.6e-98 362.1 547 45.0
Ca_20768_v3 Cicer arietinum L. HOM05D003582 ORTHO05D004789 9.6e-98 361.3 526 45.2
HanXRQChr09g0264801 Helianthus annuus HOM05D003582 ORTHO05D004789 9.6e-98 361.3 543 44.4
arahy.Tifrunner.gnm1.ann1.90NIGC Arachis hypogaea HOM05D003582 ORTHO05D004789 2.8e-97 359.8 522 45.0
ClCG11G004930 Citrullus lanatus HOM05D003582 ORTHO05D004789 3.6e-97 359.4 540 43.7
arahy.Tifrunner.gnm1.ann1.YPLH9H Arachis hypogaea HOM05D003582 ORTHO05D004789 8.1e-97 358.2 522 44.8
Haze_14390 Corylus avellana HOM05D003582 ORTHO05D004789 1.8e-96 357.1 633 40.4
SGA_v2.0_scaffold52G19103 Striga asiatica HOM05D003582 ORTHO05D004789 3.1e-96 356.3 546 44.7
ECA238G0900 Erigeron canadensis HOM05D003582 ORTHO05D004789 4.0e-96 355.9 537 44.9
Lalb_Chr02g0158711 Lupinus albus HOM05D003582 ORTHO05D004789 4.0e-96 355.9 554 43.7
Gohir.A07G180200 Gossypium hirsutum HOM05D003582 ORTHO05D004789 5.3e-96 355.5 506 46.8
Sc10g0000640 Simmondsia chinensis HOM05D003582 ORTHO05D004789 5.3e-96 355.5 546 43.8
MELO3C022046.2 Cucumis melo HOM05D003582 ORTHO05D004789 6.9e-96 355.1 545 43.7
FAN05G2033 Fragaria x ananassa HOM05D003582 ORTHO05D004789 9.0e-96 354.8 536 43.5
PGSC0003DMG400001466 Solanum tuberosum HOM05D003582 ORTHO05D004789 1.2e-95 354.4 509 46.0
THA.LOC104802987 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 1.2e-95 354.4 512 46.3
FAN14G2787 Fragaria x ananassa HOM05D003582 ORTHO05D004789 1.5e-95 354.0 536 43.3
FAN02G0181 Fragaria x ananassa HOM05D003582 ORTHO05D004789 3.4e-95 352.8 536 42.9
Nitab4.5_0006516g0040 Nicotiana tabacum HOM05D003582 ORTHO05D004789 5.8e-95 352.1 536 45.7
Lsat_1_v5_gn_2_89661 Lactuca sativa HOM05D003582 ORTHO05D004789 7.6e-95 351.7 516 45.7
Sopen02g033970 Solanum pennellii HOM05D003582 ORTHO05D004789 3.8e-94 349.4 509 45.6
Sed0002547 Sechium edule HOM05D003582 ORTHO05D004789 4.9e-94 349.0 540 43.3
Solyc02g089175.2 Solanum lycopersicum HOM05D003582 ORTHO05D004789 8.4e-94 348.2 509 45.6
Hund13680 Selenicereus undatus HOM05D003582 ORTHO05D004789 1.4e-93 347.4 548 42.7
Lj1g0000491 Lotus japonicus HOM05D003582 ORTHO05D004789 1.9e-93 347.1 557 43.1
SalBow1G0251 Salvia bowleyana HOM05D003582 ORTHO05D004789 1.9e-93 347.1 545 44.4
Nitab4.5_0005120g0010 Nicotiana tabacum HOM05D003582 ORTHO05D004789 5.4e-93 345.5 510 46.1
CsaV3_5G038660 Cucumis sativus L. HOM05D003582 ORTHO05D004789 2.1e-92 343.6 540 43.0
Sed0004528 Sechium edule HOM05D003582 ORTHO05D004789 2.1e-92 343.6 542 43.5
Psat1g066040 Pisum sativum HOM05D003582 ORTHO05D004789 4.6e-92 342.4 527 43.1
arahy.Tifrunner.gnm1.ann1.3TK0C1 Arachis hypogaea HOM05D003582 ORTHO05D004789 1.0e-91 341.3 583 41.0
TPR.G15956 Trifolium pratense HOM05D003582 ORTHO05D004789 2.3e-91 340.1 566 40.5
arahy.Tifrunner.gnm1.ann1.936LCP Arachis hypogaea HOM05D003582 ORTHO05D004789 5.1e-91 339.0 554 41.9
Medtr6g015885 Medicago truncatula HOM05D003582 ORTHO05D004789 1.1e-90 337.8 522 42.3
Dinv34912 Davidia involucrata HOM05D003582 ORTHO05D004789 1.5e-90 337.4 445 48.5
MBI16_g37884_MAGBIO Magnolia biondii HOM05D003582 ORTHO05D004789 3.3e-90 336.3 513 42.3
AUR62023166 Chenopodium quinoa HOM05D003582 ORTHO05D004789 4.3e-90 335.9 554 41.2
THA.LOC104827143 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 7.4e-90 335.1 504 44.2
Ah.10g038150 Amaranthus hybridus HOM05D003582 ORTHO05D004789 1.6e-89 334.0 552 41.5
AUR62009488 Chenopodium quinoa HOM05D003582 ORTHO05D004789 1.6e-89 334.0 554 40.6
Thhalv10013036m.g Eutrema salsugineum HOM05D003582 ORTHO05D004789 1.8e-88 330.5 501 43.3
TAR629G1978 Trochodendron aralioides HOM05D003582 ORTHO05D004789 2.4e-88 330.1 525 44.4
Ah.16g101080 Amaranthus hybridus HOM05D003582 ORTHO05D004789 4.0e-88 329.3 553 40.7
AT3G02320 Arabidopsis thaliana HOM05D003582 ORTHO05D004789 4.0e-88 329.3 505 42.4
Aqoxy7G03254 Aquilegia oxysepala HOM05D003582 ORTHO05D004789 5.3e-88 328.9 552 43.1
AL3G11610 Arabidopsis lyrata HOM05D003582 ORTHO05D004789 5.3e-88 328.9 505 42.4
Aa31LG5G12860 Aethionema arabicum HOM05D003582 ORTHO05D004789 9.0e-88 328.2 508 43.3
A10p23210 Brassica napus HOM05D003582 ORTHO05D004789 1.5e-87 327.4 501 43.7
BraA10t44389Z Brassica rapa HOM05D003582 ORTHO05D004789 1.5e-87 327.4 501 43.7
Aqoxy3G01120 Aquilegia oxysepala HOM05D003582 ORTHO05D004789 2.6e-87 326.6 550 43.1
CARHR076300 Cardamine hirsuta HOM05D003582 ORTHO05D004789 4.5e-87 325.9 501 43.3
Sp3g01380 Schrenkiella parvula HOM05D003582 ORTHO05D004789 4.5e-87 325.9 500 42.8
CARHR197510 Cardamine hirsuta HOM05D003582 ORTHO05D004789 5.8e-87 325.5 505 42.2
Carub.0003s0143 Capsella rubella HOM05D003582 ORTHO05D004789 2.2e-86 323.6 505 42.0
unitig_0.g556 Utricularia gibba HOM05D003582 ORTHO05D004789 2.9e-86 323.2 486 44.2
CDE04G3698 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 3.8e-86 322.8 534 41.2
BcaB08g36862 Brassica carinata HOM05D003582 ORTHO05D004789 4.9e-86 322.4 504 43.1
BolC1t05913H Brassica oleracea HOM05D003582 ORTHO05D004789 4.9e-86 322.4 516 42.6
AT5G15810 Arabidopsis thaliana HOM05D003582 ORTHO05D004789 8.4e-86 321.6 506 41.9
BcaC09g47692 Brassica carinata HOM05D003582 ORTHO05D004789 1.1e-85 321.2 501 42.7
FAN09G2080 Fragaria x ananassa HOM05D003582 ORTHO05D004789 1.9e-85 320.5 573 39.4
AL6G26670 Arabidopsis lyrata HOM05D003582 ORTHO05D004789 4.2e-85 319.3 501 42.1
BcaC09g47691 Brassica carinata HOM05D003582 ORTHO05D004789 5.5e-85 318.9 500 41.8
Gohir.D07G187100 Gossypium hirsutum HOM05D003582 ORTHO05D004789 1.6e-84 317.4 474 46.0
BraSC141t45620Z Brassica rapa HOM05D003582 ORTHO05D004789 2.7e-84 316.6 510 42.5
BcaC04g18934 Brassica carinata HOM05D003582 ORTHO05D004789 4.6e-84 315.8 501 42.1
BolC9t58968H Brassica oleracea HOM05D003582 ORTHO05D004789 4.6e-84 315.8 501 42.1
EL10Ac2g04447 Beta vulgaris HOM05D003582 ORTHO05D004789 6.0e-84 315.5 557 41.5
C09p61260 Brassica napus HOM05D003582 ORTHO05D004789 6.0e-84 315.5 501 42.1
HPP92_012207 Vanilla planifolia HOM05D003582 ORTHO05D004789 7.9e-84 315.1 510 42.4
CDE07G0251 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 1.3e-83 314.3 534 40.6
Aa31LG11G13760 Aethionema arabicum HOM05D003582 ORTHO05D004789 1.8e-83 313.9 501 42.7
Sp6g28300 Schrenkiella parvula HOM05D003582 ORTHO05D004789 1.1e-82 311.2 501 41.7
Carub.0006s1397 Capsella rubella HOM05D003582 ORTHO05D004789 2.5e-82 310.1 557 40.4
CDE07G0024 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 9.6e-82 308.1 540 39.8
BraA03t10061Z Brassica rapa HOM05D003582 ORTHO05D004789 1.4e-80 304.3 565 39.8
SEGI_16900 Sequoiadendron giganteum HOM05D003582 ORTHO05D004789 3.1e-80 303.1 573 37.7
SGA_v2.0_scaffold4G02360 Striga asiatica HOM05D003582 ORTHO05D004789 9.0e-80 301.6 474 43.5
ATR0827G075 Amborella trichopoda HOM05D003582 ORTHO05D004789 3.4e-79 299.7 504 39.3
A03p07370 Brassica napus HOM05D003582 ORTHO05D004789 4.5e-79 299.3 554 38.8
BcaB01g05025 Brassica carinata HOM05D003582 ORTHO05D004789 2.9e-78 296.6 502 39.4
HPP92_012242 Vanilla planifolia HOM05D003582 ORTHO05D004789 1.4e-77 294.3 590 37.3
C03p08560 Brassica napus HOM05D003582 ORTHO05D004789 9.3e-77 291.6 594 36.7
BolC3t13361H Brassica oleracea HOM05D003582 ORTHO05D004789 9.3e-77 291.6 594 36.7
THA.LOC104823883 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 9.3e-77 291.6 507 41.0
DCAR_011024 Daucus carota HOM05D003582 ORTHO05D004789 3.5e-76 289.7 452 43.8
FvH4_6g46450 Fragaria vesca HOM05D003582 ORTHO05D004789 7.9e-76 288.5 497 40.0
Atru.chr8.571 Acer truncatum HOM05D003582 ORTHO05D004789 3.0e-75 286.6 346 50.9
Oeu004424.1 Olea europaea HOM05D003582 ORTHO05D004789 1.4e-72 277.7 506 41.9
Zm00001eb061890 Zea mays HOM05D003582 ORTHO05D004789 3.1e-72 276.6 507 37.9
Dinv33857 Davidia involucrata HOM05D003582 ORTHO05D004789 2.0e-71 273.9 299 53.5
Os03g0786700 Oryza sativa ssp. japonica HOM05D003582 ORTHO05D004789 1.3e-70 271.2 506 35.2
BNapus_Darmor_BZH_scaffold_208p00140 Brassica napus HOM05D003582 ORTHO05D004789 7.9e-68 261.9 438 42.0
Sopen03g019090 Solanum pennellii HOM05D003582 ORTHO05D004789 4.1e-64 249.6 487 38.8
SMO203G0237 Selaginella moellendorffii HOM05D003582 ORTHO05D004789 3.4e-63 246.5 510 36.5
Mapoly0103s0023 Marchantia polymorpha HOM05D003582 ORTHO05D004789 2.0e-58 230.7 504 33.5
Peaxi162Scf00166g00210 Petunia axillaris HOM05D003582 ORTHO05D004789 4.8e-57 226.1 288 50.0
CBR_g3723 Chara braunii HOM05D003582 ORTHO05D004789 2.2e-54 217.2 538 32.5
Pp3c16_12880 Physcomitrium patens HOM05D003582 ORTHO05D004789 6.5e-54 215.7 517 33.1
Hma1.2p1_1502F.1_g287400 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 1.4e-53 214.5 107 100.0
Hma1.2p1_2026F.1_g311623 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 1.4e-53 214.5 107 100.0
Os10g0357800 Oryza sativa ssp. japonica HOM05D003582 ORTHO05D004789 7.9e-52 208.8 509 32.8
Zm00001eb230770 Zea mays HOM05D003582 ORTHO05D004789 8.5e-46 188.7 422 32.5
Nn3g17509 Nelumbo nucifera HOM05D003582 ORTHO05D004789 3.6e-44 183.3 216 50.9
Zm00001eb012220 Zea mays HOM05D003582 ORTHO05D004789 2.3e-43 180.6 244 44.7
MCO10G029 Micromonas commoda HOM05D003582 ORTHO05D004789 8.8e-43 178.7 519 28.9
AagrBONN_evm.TU.Sc2ySwM_344.1885 Anthoceros agrestis HOM05D003582 ORTHO05D004789 6.3e-41 172.6 385 33.5
PGSC0003DMG401007649 Solanum tuberosum HOM05D003582 ORTHO05D004789 3.1e-40 170.2 213 50.7
Solyc03g070400.3 Solanum lycopersicum HOM05D003582 ORTHO05D004789 9.1e-40 168.7 289 39.4
CDE01G0712 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 2.0e-39 167.5 174 54.0
COL.COLO4_08945 Corchorus olitorius HOM05D003582 ORTHO05D004789 1.2e-36 158.3 348 35.1
Cre10.g422000 Chlamydomonas reinhardtii HOM05D003582 ORTHO05D004789 1.7e-33 147.9 424 28.8
Hma1.2p1_1502F.1_g287380 Hydrangea macrophylla HOM05D003582 ORTHO05D228296 4.8e-33 146.4 129 63.6
CDE04G0570 Ceratophyllum demersum HOM05D003582 ORTHO05D130660 7.0e-32 142.5 133 55.6
arahy.Tifrunner.gnm1.ann1.DBFW6U Arachis hypogaea HOM05D001801 ORTHO05D001739 1.6e-31 141.4 220 45.0
PRCOL_00005295 Prasinoderma coloniale HOM05D003582 ORTHO05D004789 4.5e-31 139.8 451 27.3
MBI16_g47662_MAGBIO Magnolia biondii HOM05D003582 ORTHO05D022453 5.0e-30 136.3 154 48.7
Oeu021203.1 Olea europaea HOM05D000526 ORTHO05D000956 7.8e-23 112.5 76 72.4
Eucgr.J01405 Eucalyptus grandis HOM05D003582 ORTHO05D004789 2.3e-19 100.9 60 81.7
PGSC0003DMG402007649 Solanum tuberosum HOM05D003582 ORTHO05D004789 4.1e-16 90.1 60 73.3
COL.COLO4_00020 Corchorus olitorius HOM05D003582 ORTHO05D022453 6.8e-11 72.8 72 56.9
Solyc03g070410.3 Solanum lycopersicum HOM05D003582 ORTHO05D390892 5.8e-10 69.7 191 32.5


User provided reference genes

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