Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.2e-106 389.0 201 100.0
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.2e-103 379.0 201 97.0
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.1e-54 217.2 201 57.2
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.2e-53 213.8 201 52.7
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.4e-52 210.3 172 61.0
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 6.8e-52 208.0 203 52.7
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 1.5e-51 206.8 201 52.7
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 1.7e-50 203.4 173 56.1
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 1.7e-50 203.4 173 56.1
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 1.4e-49 200.3 156 60.9
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 5.4e-49 198.4 159 57.2
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 2.7e-48 196.1 200 49.5
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 1.0e-47 194.1 201 55.2
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 1.7e-47 193.4 174 56.9
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 8.6e-47 191.0 198 53.0
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.1e-46 190.7 201 50.7
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.6e-45 186.8 204 51.5
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 2.8e-45 186.0 161 57.1
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 3.1e-44 182.6 197 52.3
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 8.9e-44 181.0 178 52.8
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 2.0e-43 179.9 159 58.5
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.1e-41 174.1 158 50.6
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.7e-39 166.8 182 48.4
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 5.1e-39 165.2 167 52.1
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 1.9e-38 163.3 193 47.2
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 2.3e-36 156.4 155 51.0
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 2.6e-35 152.9 155 48.4
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 2.9e-34 149.4 157 49.0
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 3.7e-34 149.1 194 41.8
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 4.9e-34 148.7 165 44.8
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 6.4e-34 148.3 143 49.0
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.9e-33 146.7 158 46.8
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 2.4e-33 146.4 162 44.4
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 2.4e-33 146.4 157 45.2
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 5.4e-33 145.2 165 43.0
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 5.4e-33 145.2 163 45.4
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 1.2e-32 144.1 157 46.5
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 1.2e-32 144.1 157 46.5
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.1e-32 143.3 155 45.8
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 2.7e-32 142.9 160 45.6
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 3.5e-32 142.5 159 45.9
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 3.5e-32 142.5 159 46.5
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 4.6e-32 142.1 160 46.2
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 6.0e-32 141.7 153 46.4
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 1.7e-31 140.2 160 45.6
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 1.7e-31 140.2 151 50.3
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 2.3e-31 139.8 158 46.2
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 5.1e-31 138.7 153 44.4
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.1e-30 137.5 135 49.6
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 1.9e-30 136.7 136 50.0
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.5e-30 136.3 170 41.8
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 2.5e-30 136.3 120 57.5
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 2.5e-30 136.3 109 60.6
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 1.2e-29 134.0 162 40.1
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 2.8e-29 132.9 162 40.1
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 5.2e-28 128.6 136 46.3
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 2.0e-27 126.7 160 41.9
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 2.0e-27 126.7 160 41.9
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 2.6e-27 126.3 161 42.2
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 2.6e-27 126.3 161 42.2
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 3.4e-27 125.9 112 52.7
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 4.4e-27 125.6 160 43.1
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 4.4e-27 125.6 165 42.4
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 5.8e-27 125.2 163 44.8
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 5.8e-27 125.2 164 39.6
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 7.6e-27 124.8 138 40.6
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 7.6e-27 124.8 138 40.6
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.3e-26 124.0 204 37.7
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 1.7e-26 123.6 183 41.0
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 4.9e-26 122.1 153 42.5
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 8.4e-26 121.3 153 41.2
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 1.1e-25 120.9 176 41.5
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 1.4e-25 120.6 144 43.1
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 5.4e-25 118.6 161 38.5
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.2e-24 117.5 129 40.3
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.6e-24 117.1 117 49.6
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.6e-24 117.1 159 39.6
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 2.1e-24 116.7 154 40.9
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 2.1e-24 116.7 170 38.2
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.7e-24 116.3 166 40.4
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 3.5e-24 115.9 149 40.9
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 6.0e-24 115.2 150 43.3
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 7.8e-24 114.8 166 38.6
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 7.8e-24 114.8 149 45.0
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 7.8e-24 114.8 152 42.1
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.7e-23 113.6 153 39.2
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 1.7e-23 113.6 168 39.3
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.7e-23 113.6 171 41.5
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 2.3e-23 113.2 149 38.9
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.0e-23 112.8 138 40.6
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 3.0e-23 112.8 169 39.1
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 3.0e-23 112.8 153 38.6
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.9e-23 112.5 167 41.3
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 5.1e-23 112.1 179 39.1
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 5.1e-23 112.1 146 40.4
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 6.6e-23 111.7 178 38.8
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 6.6e-23 111.7 147 38.1
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 6.6e-23 111.7 165 36.4
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 8.7e-23 111.3 185 38.4
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 1.1e-22 110.9 151 37.7
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.5e-22 110.5 175 38.3
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 1.5e-22 110.5 131 42.7
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 1.5e-22 110.5 167 38.9
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 1.9e-22 110.2 151 39.7
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.9e-22 110.2 145 42.8
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 1.9e-22 110.2 154 35.7
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 1.9e-22 110.2 145 40.7
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 5.6e-22 108.6 175 40.0
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 5.6e-22 108.6 177 39.0
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 5.6e-22 108.6 154 42.9
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 5.6e-22 108.6 123 47.2
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 9.6e-22 107.8 130 40.0
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 9.6e-22 107.8 173 38.2
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 9.6e-22 107.8 187 38.5
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-21 107.5 151 39.1
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 1.2e-21 107.5 151 39.1
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 1.6e-21 107.1 151 38.4
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 1.6e-21 107.1 173 38.2
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 1.6e-21 107.1 170 36.5
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 2.1e-21 106.7 184 35.3
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 2.1e-21 106.7 151 39.1
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 2.1e-21 106.7 158 39.9
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 2.8e-21 106.3 175 38.3
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 2.8e-21 106.3 148 40.5
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 2.8e-21 106.3 148 39.9
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 3.6e-21 105.9 175 37.1
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 3.6e-21 105.9 175 38.3
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.7e-21 105.5 180 36.1
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 4.7e-21 105.5 169 37.3
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 6.2e-21 105.1 130 39.2
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 6.2e-21 105.1 169 36.1
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 8.1e-21 104.8 164 37.2
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 8.1e-21 104.8 93 48.4
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.1e-20 104.4 152 38.2
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.8e-20 103.6 151 37.1
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 2.4e-20 103.2 129 39.5
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 3.1e-20 102.8 144 38.9
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 4.0e-20 102.4 129 40.3
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 4.0e-20 102.4 124 41.9
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 5.3e-20 102.1 154 38.3
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 5.3e-20 102.1 97 44.3
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 5.3e-20 102.1 138 41.3
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 6.9e-20 101.7 145 36.6
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 9.0e-20 101.3 164 40.2
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 1.2e-19 100.9 126 40.5
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 2.0e-19 100.1 124 41.1
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 3.4e-19 99.4 143 38.5
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 5.8e-19 98.6 142 40.1
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 2.2e-18 96.7 124 40.3
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 4.9e-18 95.5 100 43.0
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 1.1e-17 94.4 186 33.3
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 4.2e-17 92.4 100 43.0
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 2.7e-16 89.7 168 34.5
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.7e-15 87.0 112 42.0
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 7.3e-14 81.6 87 44.8
FAN05G2299 Fragaria x ananassa HOM05D003663 ORTHO05D005327 1.2e-11 74.3 72 54.2
FAN02G2952 Fragaria x ananassa HOM05D000062 ORTHO05D000043 5.8e-11 72.0 71 50.7
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.2e-10 70.1 88 39.8
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 1.2e-08 64.3 155 32.3
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.6e-08 62.4 57 45.6
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.5e-06 57.4 81 35.8
Pp3c1_4130 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.5e-06 57.4 130 26.9
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.5e-06 56.6 72 34.7
SMO290G0002 Selaginella moellendorffii HOM05D005423 ORTHO05D006223 2.5e-06 56.6 97 32.0
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 4.3e-06 55.8 102 30.4
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 4.3e-06 55.8 129 27.1
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 9.6e-06 54.7 159 27.0
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 9.6e-06 54.7 72 33.3


User provided reference genes

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