Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_1036F.1_g250545 Hydrangea macrophylla HOM05D002928 ORTHO05D003794 1.8e-148 529.3 274 100.0
Rhsim01G0028300 Rhododendron simsii HOM05D002928 ORTHO05D003794 2.8e-80 302.8 360 51.7
vmacro16797 Vaccinium macrocarpon HOM05D002928 ORTHO05D003794 3.6e-80 302.4 360 51.7
Actinidia38670 Actinidia chinensis HOM05D002928 ORTHO05D003794 8.9e-79 297.7 360 51.9
Haze_19196 Corylus avellana HOM05D002928 ORTHO05D003794 9.8e-78 294.3 278 64.0
vmacro05439 Vaccinium macrocarpon HOM05D002928 ORTHO05D003794 9.8e-78 294.3 360 51.9
CSS0004317 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 2.9e-77 292.7 358 51.7
CSS0014470 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 6.4e-77 291.6 358 51.7
Thecc.09G029000 Theobroma cacao HOM05D002928 ORTHO05D003794 1.2e-75 287.3 356 50.6
Atru.chr7.18 Acer truncatum HOM05D002928 ORTHO05D003794 3.5e-75 285.8 358 53.1
Manes.06G034500 Manihot esculenta HOM05D002928 ORTHO05D003794 3.5e-75 285.8 355 51.0
Dinv42848 Davidia involucrata HOM05D002928 ORTHO05D003794 1.3e-74 283.9 360 51.9
Dinv43252 Davidia involucrata HOM05D002928 ORTHO05D003794 1.3e-74 283.9 360 51.9
Duzib168G1829 Durio zibethinus HOM05D002928 ORTHO05D003794 3.0e-74 282.7 355 49.3
CiPaw.15G167900 Carya illinoinensis HOM05D002928 ORTHO05D003794 5.0e-74 282.0 359 50.4
Lj1C1017T2 Lonicera japonica HOM05D002928 ORTHO05D003794 2.5e-73 279.6 384 47.7
Oeu054272.1 Olea europaea HOM05D002928 ORTHO05D003794 2.5e-73 279.6 360 50.6
Manes.14G144400 Manihot esculenta HOM05D002928 ORTHO05D003794 7.3e-73 278.1 357 51.3
Hma1.2p1_0222F.1_g093640 Hydrangea macrophylla HOM05D002928 ORTHO05D003794 9.5e-73 277.7 361 51.2
SalBow1G3419 Salvia bowleyana HOM05D002928 ORTHO05D003794 9.5e-73 277.7 360 51.7
ClCG02G014440 Citrullus lanatus HOM05D002928 ORTHO05D003794 1.6e-72 276.9 355 51.0
COL.COLO4_18815 Corchorus olitorius HOM05D002928 ORTHO05D003794 2.8e-72 276.2 358 49.4
MELO3C004130.2 Cucumis melo HOM05D002928 ORTHO05D003794 2.8e-72 276.2 355 50.1
Potri.018G105900 Populus trichocarpa HOM05D002928 ORTHO05D003794 3.6e-72 275.8 358 51.4
CsaV3_2G007560 Cucumis sativus L. HOM05D002928 ORTHO05D003794 6.2e-72 275.0 355 50.1
Ciclev10007753m.g Citrus clementina HOM05D002928 ORTHO05D003794 8.1e-72 274.6 358 49.7
CSS0027124 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 1.8e-71 273.5 358 50.6
Rhsim03G0257400 Rhododendron simsii HOM05D002928 ORTHO05D003794 2.3e-71 273.1 389 48.1
Sed0012591 Sechium edule HOM05D002928 ORTHO05D003794 3.1e-71 272.7 356 50.3
Potri.006G183600 Populus trichocarpa HOM05D002928 ORTHO05D003794 5.2e-71 271.9 360 50.0
Gohir.A07G027100 Gossypium hirsutum HOM05D002928 ORTHO05D003794 8.9e-71 271.2 325 51.1
EL10Ac6g15341 Beta vulgaris HOM05D002928 ORTHO05D003794 3.4e-70 269.2 358 49.4
MSTRG.19654 Avicennia marina HOM05D002928 ORTHO05D003794 4.4e-70 268.9 359 49.9
CSS0013967 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 4.4e-70 268.9 359 50.4
QL02p093370 Quercus lobata HOM05D002928 ORTHO05D003794 4.4e-70 268.9 358 48.9
Prupe.7G264100 Prunus persica HOM05D002928 ORTHO05D003794 7.5e-70 268.1 362 48.9
Sed0017586 Sechium edule HOM05D002928 ORTHO05D003794 9.9e-70 267.7 356 50.6
Cfa020818 Carpinus fangiana HOM05D002928 ORTHO05D003794 1.3e-69 267.3 364 49.2
Migut.J01351 Erythranthe guttata HOM05D002928 ORTHO05D003794 1.3e-69 267.3 362 48.9
Eucgr.C02536 Eucalyptus grandis HOM05D002928 ORTHO05D003794 1.7e-69 266.9 366 48.1
CAN.G160.55 Capsicum annuum HOM05D002928 ORTHO05D003794 2.2e-69 266.5 359 51.8
Oeu052208.1 Olea europaea HOM05D002928 ORTHO05D003794 2.2e-69 266.5 359 50.1
Gorai.001G032400 Gossypium raimondii HOM05D002928 ORTHO05D003794 2.9e-69 266.2 357 47.6
Gohir.D07G031100 Gossypium hirsutum HOM05D002928 ORTHO05D003794 3.7e-69 265.8 357 47.6
Sabra18G0090300 Salix brachista HOM05D002928 ORTHO05D003794 4.9e-69 265.4 362 49.2
Gorai.010G113600 Gossypium raimondii HOM05D002928 ORTHO05D003794 6.4e-69 265.0 358 48.9
Hund04383 Selenicereus undatus HOM05D002928 ORTHO05D003794 8.3e-69 264.6 358 46.9
Duzib187G0297 Durio zibethinus HOM05D002928 ORTHO05D003794 1.1e-68 264.2 357 48.5
Nn2g12407 Nelumbo nucifera HOM05D002928 ORTHO05D003794 1.1e-68 264.2 361 49.9
Eucgr.C02497 Eucalyptus grandis HOM05D002928 ORTHO05D003794 1.4e-68 263.8 366 47.5
COL.COLO4_22866 Corchorus olitorius HOM05D002928 ORTHO05D003794 2.4e-68 263.1 356 47.8
Dinv41370 Davidia involucrata HOM05D002928 ORTHO05D003794 2.4e-68 263.1 185 76.2
PGR102G2877 Punica granatum HOM05D002928 ORTHO05D003794 2.4e-68 263.1 358 46.9
Gohir.A06G098000 Gossypium hirsutum HOM05D002928 ORTHO05D003794 3.2e-68 262.7 359 49.6
ECA248G1996 Erigeron canadensis HOM05D002928 ORTHO05D003794 7.1e-68 261.5 333 51.4
Gohir.D06G098500 Gossypium hirsutum HOM05D002928 ORTHO05D003794 9.2e-68 261.2 358 48.3
Lj1C1019G10 Lonicera japonica HOM05D002928 ORTHO05D003794 1.6e-67 260.4 363 49.6
Sopen12g004860 Solanum pennellii HOM05D002928 ORTHO05D003794 2.7e-67 259.6 360 49.2
Solyc12g009990.2 Solanum lycopersicum HOM05D002928 ORTHO05D003794 4.6e-67 258.8 360 50.0
Lalb_Chr11g0072651 Lupinus albus HOM05D002928 ORTHO05D003794 6.0e-67 258.5 362 47.0
Cpa.g.sc46.162 Carica papaya HOM05D002928 ORTHO05D003794 7.8e-67 258.1 351 49.0
CANSAT11G1221 Cannabis sativa HOM05D002928 ORTHO05D003794 1.0e-66 257.7 355 48.2
QL02p068861 Quercus lobata HOM05D002928 ORTHO05D003794 2.3e-66 256.5 359 47.6
Actinidia24380 Actinidia chinensis HOM05D002928 ORTHO05D003794 5.1e-66 255.4 189 74.1
THA.LOC104803542 Tarenaya hassleriana HOM05D002928 ORTHO05D003794 6.6e-66 255.0 362 47.8
TWI34G1864 Tripterygium wilfordii HOM05D002928 ORTHO05D003794 8.6e-66 254.6 362 47.8
Sabra06G0139500 Salix brachista HOM05D002928 ORTHO05D003794 2.5e-65 253.1 360 48.3
FvH4_2g11040 Fragaria vesca HOM05D002928 ORTHO05D003794 5.6e-65 251.9 362 47.2
Lsat_1_v5_gn_8_63581 Lactuca sativa HOM05D002928 ORTHO05D003794 7.3e-65 251.5 372 47.8
TAR383G0178 Trochodendron aralioides HOM05D002928 ORTHO05D003794 7.3e-65 251.5 360 46.4
Glyma.06G220500 Glycine max HOM05D002928 ORTHO05D003794 9.5e-65 251.1 359 47.9
PGSC0003DMG400007905 Solanum tuberosum HOM05D002928 ORTHO05D003794 1.6e-64 250.4 360 48.9
FvH4_1g00830 Fragaria vesca HOM05D002928 ORTHO05D003794 4.7e-64 248.8 363 46.8
FAN28G2936 Fragaria x ananassa HOM05D002928 ORTHO05D003794 4.7e-64 248.8 363 46.8
Aqoxy3G02300 Aquilegia oxysepala HOM05D002928 ORTHO05D003794 8.1e-64 248.1 366 47.0
FAN23G2032 Fragaria x ananassa HOM05D002928 ORTHO05D003794 8.1e-64 248.1 363 47.1
Lalb_Chr13g0300841 Lupinus albus HOM05D002928 ORTHO05D003794 1.1e-63 247.7 365 46.6
HanXRQChr05g0143981 Helianthus annuus HOM05D002928 ORTHO05D003794 1.4e-63 247.3 362 47.0
Lj6g0013054 Lotus japonicus HOM05D002928 ORTHO05D003794 1.4e-63 247.3 361 47.6
Peaxi162Scf00062g00219 Petunia axillaris HOM05D002928 ORTHO05D003794 1.8e-63 246.9 354 48.0
TWI32G1175 Tripterygium wilfordii HOM05D002928 ORTHO05D003794 1.8e-63 246.9 362 46.1
CiPaw.16G108700 Carya illinoinensis HOM05D002928 ORTHO05D003794 2.4e-63 246.5 354 47.2
THA.LOC104819994 Tarenaya hassleriana HOM05D002928 ORTHO05D003794 4.0e-63 245.7 364 46.2
RcHm_v2.0_Chr2g0085561 Rosa chinensis HOM05D002928 ORTHO05D003794 8.9e-63 244.6 363 47.4
Nitab4.5_0002891g0050 Nicotiana tabacum HOM05D002928 ORTHO05D003794 1.2e-62 244.2 364 48.6
FAN24G1218 Fragaria x ananassa HOM05D002928 ORTHO05D003794 2.0e-62 243.4 362 46.4
HanXRQChr06g0180611 Helianthus annuus HOM05D002928 ORTHO05D003794 2.0e-62 243.4 360 47.2
CAN.G551.45 Capsicum annuum HOM05D002928 ORTHO05D003794 2.6e-62 243.0 357 48.7
FAN26G1266 Fragaria x ananassa HOM05D002928 ORTHO05D003794 9.9e-62 241.1 361 47.1
VMungo1309G0506 Vigna mungo HOM05D002928 ORTHO05D003794 4.9e-61 238.8 360 45.6
SGA_v2.0_scaffold45G17027 Striga asiatica HOM05D002928 ORTHO05D003794 8.4e-61 238.0 352 47.4
Peaxi162Scf00643g00413 Petunia axillaris HOM05D002928 ORTHO05D003794 1.4e-60 237.3 318 51.9
Nitab4.5_0008875g0030 Nicotiana tabacum HOM05D002928 ORTHO05D003794 1.9e-60 236.9 364 47.8
Aqoxy1G00970 Aquilegia oxysepala HOM05D002928 ORTHO05D003794 5.4e-60 235.3 365 45.5
AUR62017854 Chenopodium quinoa HOM05D002928 ORTHO05D003794 1.2e-59 234.2 360 45.3
Cc06_g14860 Coffea canephora HOM05D002928 ORTHO05D003794 2.1e-59 233.4 358 43.3
AL7G21540 Arabidopsis lyrata HOM05D002928 ORTHO05D003794 3.5e-59 232.6 370 44.3
Thhalv10024667m.g Eutrema salsugineum HOM05D002928 ORTHO05D003794 4.6e-59 232.3 369 43.6
Peaxi162Scf01764g00002 Petunia axillaris HOM05D002928 ORTHO05D003794 4.6e-59 232.3 318 52.2
unitig_60.g25522 Utricularia gibba HOM05D002928 ORTHO05D003794 1.3e-58 230.7 357 44.8
Phvul.009G194700 Phaseolus vulgaris HOM05D002928 ORTHO05D003794 3.9e-58 229.2 364 44.2
MD15G1151700 Malus domestica HOM05D002928 ORTHO05D003794 8.6e-58 228.0 357 45.9
ATR0115G002 Amborella trichopoda HOM05D002928 ORTHO05D003794 1.1e-57 227.6 359 44.3
AT4G30600 Arabidopsis thaliana HOM05D002928 ORTHO05D003794 2.5e-57 226.5 371 44.5
MD02G1006600 Malus domestica HOM05D002928 ORTHO05D003794 3.3e-57 226.1 357 45.7
AUR62003540 Chenopodium quinoa HOM05D002928 ORTHO05D003794 5.6e-57 225.3 353 45.9
Ah.03g147670 Amaranthus hybridus HOM05D002928 ORTHO05D003794 7.3e-57 224.9 341 46.9
Sp7g28470 Schrenkiella parvula HOM05D002928 ORTHO05D003794 7.3e-57 224.9 369 42.8
CiPaw.16G110200 Carya illinoinensis HOM05D002928 ORTHO05D003794 9.6e-57 224.6 337 46.6
PSO063G7436 Papaver somniferum HOM05D002928 ORTHO05D003794 2.1e-56 223.4 360 44.7
PSO384G2120 Papaver somniferum HOM05D002928 ORTHO05D003794 3.6e-56 222.6 357 45.4
CARHR238470 Cardamine hirsuta HOM05D002928 ORTHO05D003794 1.1e-55 221.1 373 43.7
Carub.0007s0997 Capsella rubella HOM05D002928 ORTHO05D003794 1.8e-55 220.3 365 44.1
HPP92_005048 Vanilla planifolia HOM05D002928 ORTHO05D003794 3.1e-55 219.5 363 42.7
PSO339G1052 Papaver somniferum HOM05D002928 ORTHO05D003794 5.2e-55 218.8 354 45.2
ATR0772G178 Amborella trichopoda HOM05D002928 ORTHO05D003794 9.0e-55 218.0 357 44.0
Aa31LG2G19920 Aethionema arabicum HOM05D002928 ORTHO05D003794 2.0e-54 216.9 368 43.2
Sc10g0008640 Simmondsia chinensis HOM05D002928 ORTHO05D003794 3.4e-54 216.1 358 42.7
PSO591G0067 Papaver somniferum HOM05D002928 ORTHO05D003794 7.6e-54 214.9 358 44.4
CDE06G1463 Ceratophyllum demersum HOM05D002928 ORTHO05D003794 1.7e-53 213.8 360 43.9
Ca_21132_v3 Cicer arietinum L. HOM05D002928 ORTHO05D003794 2.9e-53 213.0 376 43.6
Psat0s2403g0040 Pisum sativum HOM05D002928 ORTHO05D003794 2.9e-53 213.0 373 45.6
BcaNung00569 Brassica carinata HOM05D002928 ORTHO05D003794 1.1e-52 211.1 349 45.3
BcaNung02974 Brassica carinata HOM05D002928 ORTHO05D003794 2.4e-52 209.9 362 44.5
Medtr4g130770 Medicago truncatula HOM05D002928 ORTHO05D003794 3.2e-52 209.5 371 44.7
arahy.Tifrunner.gnm1.ann1.V0HTQD Arachis hypogaea HOM05D002928 ORTHO05D003794 4.2e-52 209.1 374 42.8
arahy.Tifrunner.gnm1.ann1.AAXI8T Arachis hypogaea HOM05D002928 ORTHO05D003794 1.2e-51 207.6 374 42.5
C07p58050 Brassica napus HOM05D002928 ORTHO05D003794 1.2e-51 207.6 354 45.2
HPP92_005065 Vanilla planifolia HOM05D002928 ORTHO05D003794 1.2e-51 207.6 363 41.3
BolC7t46263H Brassica oleracea HOM05D002928 ORTHO05D003794 1.6e-51 207.2 355 45.1
Actinidia23555 Actinidia chinensis HOM05D002928 ORTHO05D002632 8.7e-50 201.4 182 64.8
Lj4g0021489 Lotus japonicus HOM05D002928 ORTHO05D003794 1.5e-49 200.7 364 44.0
CiPaw.16G110000 Carya illinoinensis HOM05D002928 ORTHO05D003794 2.1e-48 196.8 347 42.7
Glyma.17G073300 Glycine max HOM05D002928 ORTHO05D003794 6.2e-48 195.3 363 41.6
BraA01t00707Z Brassica rapa HOM05D002928 ORTHO05D003794 2.4e-47 193.4 362 42.3
A03p60120 Brassica napus HOM05D002928 ORTHO05D003794 5.3e-47 192.2 352 44.0
BraA03t15057Z Brassica rapa HOM05D002928 ORTHO05D003794 5.3e-47 192.2 352 44.0
Nitab4.5_0001571g0050 Nicotiana tabacum HOM05D002928 ORTHO05D003794 6.9e-47 191.8 355 42.5
VMungo1215G3047 Vigna mungo HOM05D002928 ORTHO05D003794 9.0e-47 191.4 366 41.5
BcaC09g51851 Brassica carinata HOM05D002928 ORTHO05D003794 1.2e-46 191.0 367 42.0
A01p07640 Brassica napus HOM05D002928 ORTHO05D003794 1.2e-46 191.0 362 42.0
C01p08330 Brassica napus HOM05D002928 ORTHO05D003794 1.5e-46 190.7 365 41.9
BolC1t00819H Brassica oleracea HOM05D002928 ORTHO05D003794 1.5e-46 190.7 365 41.9
unitig_0.g516 Utricularia gibba HOM05D002928 ORTHO05D003794 3.4e-46 189.5 179 63.1
SGA_v2.0_scaffold23G10013 Striga asiatica HOM05D002928 ORTHO05D003794 5.8e-46 188.7 355 42.5
BcaNung04564 Brassica carinata HOM05D002928 ORTHO05D003794 7.6e-46 188.3 366 42.3
TPR.G24848 Trifolium pratense HOM05D002928 ORTHO05D003794 1.3e-45 187.6 366 42.1
Phvul.003G155500 Phaseolus vulgaris HOM05D002928 ORTHO05D003794 3.8e-45 186.0 367 40.9
CiPaw.16G109700 Carya illinoinensis HOM05D002928 ORTHO05D034233 1.4e-44 184.1 268 46.3
Nitab4.5_0005653g0030 Nicotiana tabacum HOM05D002928 ORTHO05D003794 3.2e-44 183.0 355 42.0
Lj1C1016G8 Lonicera japonica HOM05D002928 ORTHO05D003794 9.3e-44 181.4 294 45.6
CDE03G0364 Ceratophyllum demersum HOM05D002928 ORTHO05D003794 6.0e-43 178.7 166 62.0
TAR625G0332 Trochodendron aralioides HOM05D002928 ORTHO05D003794 2.3e-42 176.8 115 79.1
SGA_v2.0_scaffold426G51505 Striga asiatica HOM05D002928 ORTHO05D003794 1.3e-40 171.0 346 41.3
SEGI_12988 Sequoiadendron giganteum HOM05D002928 ORTHO05D003794 2.4e-39 166.8 182 55.5
Zm00001eb000480 Zea mays HOM05D002928 ORTHO05D003794 4.0e-39 166.0 366 38.5
SMO367G0463 Selaginella moellendorffii HOM05D002928 ORTHO05D003794 2.5e-33 146.7 354 34.2
Mapoly0062s0007 Marchantia polymorpha HOM05D002928 ORTHO05D003794 3.3e-33 146.4 381 34.6
AagrBONN_evm.TU.Sc2ySwM_344.2608 Anthoceros agrestis HOM05D002928 ORTHO05D003794 9.6e-33 144.8 371 34.0
Pp3c19_22330 Physcomitrium patens HOM05D002928 ORTHO05D003794 4.8e-32 142.5 388 32.7
RcHm_v2.0_Chr7g0224891 Rosa chinensis HOM05D002928 ORTHO05D003794 7.1e-28 128.6 137 59.1
Lju50E10G0 Lonicera japonica HOM05D002928 ORTHO05D034233 3.3e-25 119.8 120 59.2
Os08g0480100 Oryza sativa ssp. japonica HOM05D002928 ORTHO05D003794 2.8e-24 116.7 164 47.0
SGA_v2.0_scaffold37G14892 Striga asiatica HOM05D002928 ORTHO05D003794 2.8e-24 116.7 328 36.0
Lsat_1_v5_gn_1_30341 Lactuca sativa HOM05D002928 ORTHO05D003794 4.2e-20 102.8 135 52.6
MBI16_g24666_MAGBIO Magnolia biondii HOM05D002928 ORTHO05D003794 4.6e-19 99.4 74 68.9
TAR625G1201 Trochodendron aralioides HOM05D002928 ORTHO05D003794 1.3e-16 91.3 52 86.5
Rhsim01G0028400 Rhododendron simsii HOM05D002928 ORTHO05D011390 1.7e-16 90.9 92 64.1
FAN20G1404 Fragaria x ananassa HOM05D002928 ORTHO05D003794 4.8e-16 89.4 273 33.3
Lsat_1_v5_gn_4_90780 Lactuca sativa HOM05D002928 ORTHO05D003794 4.8e-16 89.4 124 47.6
PSO210G4055 Papaver somniferum HOM05D002928 ORTHO05D003794 6.3e-16 89.0 106 46.2
PSO210G6788 Papaver somniferum HOM05D002928 ORTHO05D003794 3.1e-15 86.7 106 45.3
RcHm_v2.0_Chr7g0224901 Rosa chinensis HOM05D002928 ORTHO05D003794 2.6e-14 83.6 50 84.0
GSVIVG01023620001 Vitis vinifera HOM05D002928 ORTHO05D003794 4.5e-14 82.8 47 87.2
Lsat_1_v5_gn_9_62381 Lactuca sativa HOM05D002928 ORTHO05D003794 2.2e-13 80.5 61 65.6
SEGI_39303 Sequoiadendron giganteum HOM05D002928 ORTHO05D003794 2.2e-13 80.5 53 73.6
Haze_19191 Corylus avellana HOM05D002928 ORTHO05D003794 6.5e-13 79.0 47 85.1
CBR_g18888 Chara braunii HOM05D002928 ORTHO05D003794 5.1e-10 69.3 223 33.2
Pp3c22_18840 Physcomitrium patens HOM05D002928 ORTHO05D003794 2.8e-08 63.5 122 37.7
Glyma.02G204650 Glycine max HOM05D002928 ORTHO05D034233 1.5e-06 57.8 36 80.6
MD02G1061600 Malus domestica HOM05D002928 ORTHO05D248122 2.6e-06 57.0 278 28.1
TPR.G30712 Trifolium pratense HOM05D002928 ORTHO05D003794 2.6e-06 57.0 35 82.9
Nn8g39922 Nelumbo nucifera HOM05D002928 ORTHO05D003794 5.9e-06 55.8 34 82.4


User provided reference genes

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