Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_1008F.1_g247180 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 3.8e-49 198.0 109 100.0
CSS0033428 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 3.5e-34 148.3 113 72.6
Dinv21692 Davidia involucrata HOM05D006148 ORTHO05D007955 7.7e-34 147.1 113 72.6
Manes.02G044300 Manihot esculenta HOM05D006148 ORTHO05D007955 7.7e-34 147.1 113 73.5
Hma1.2p1_0840F.1_g226570 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 2.2e-33 145.6 113 71.7
unitig_747.g21320 Utricularia gibba HOM05D006148 ORTHO05D007955 6.5e-33 144.1 113 72.6
Migut.I00620 Erythranthe guttata HOM05D006148 ORTHO05D007955 8.5e-33 143.7 113 69.0
CSS0030063 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 1.6e-31 139.4 113 69.0
MBI15_g47175_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 1.6e-31 139.4 113 68.1
CiPaw.12G047200 Carya illinoinensis HOM05D006148 ORTHO05D007955 2.1e-31 139.0 113 66.4
Cc02_g08620 Coffea canephora HOM05D006148 ORTHO05D007955 2.1e-31 139.0 113 66.4
Rhsim07G0118900 Rhododendron simsii HOM05D006148 ORTHO05D007955 2.1e-31 139.0 113 67.3
MSTRG.9371 Avicennia marina HOM05D006148 ORTHO05D007955 2.7e-31 138.7 113 65.5
Actinidia10861 Actinidia chinensis HOM05D006148 ORTHO05D007955 3.6e-31 138.3 113 67.3
Ciclev10022620m.g Citrus clementina HOM05D006148 ORTHO05D007955 3.6e-31 138.3 113 67.3
vmacro14126 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 3.6e-31 138.3 113 66.4
Eucgr.D02128 Eucalyptus grandis HOM05D006148 ORTHO05D007955 4.7e-31 137.9 113 65.5
Oeu040676.1 Olea europaea HOM05D006148 ORTHO05D007955 4.7e-31 137.9 113 64.6
SGA_v2.0_scaffold377G50308 Striga asiatica HOM05D006148 ORTHO05D007955 4.7e-31 137.9 113 66.4
SGA_v2.0_scaffold40G15681 Striga asiatica HOM05D006148 ORTHO05D007955 4.7e-31 137.9 113 66.4
unitig_46.g17987 Utricularia gibba HOM05D006148 ORTHO05D007955 4.7e-31 137.9 113 69.9
PGR031G0321 Punica granatum HOM05D006148 ORTHO05D007955 8.0e-31 137.1 113 64.6
Lalb_Chr18g0047251 Lupinus albus HOM05D006148 ORTHO05D007955 1.0e-30 136.7 113 66.4
Glyma.09G078400 Glycine max HOM05D006148 ORTHO05D007955 3.0e-30 135.2 113 63.7
Aqoxy7G03487 Aquilegia oxysepala HOM05D006148 ORTHO05D007955 4.0e-30 134.8 113 65.5
Thecc.03G242700 Theobroma cacao HOM05D006148 ORTHO05D007955 4.0e-30 134.8 113 65.5
TAR375G0576 Trochodendron aralioides HOM05D006148 ORTHO05D007955 4.0e-30 134.8 113 66.4
Nitab4.5_0003456g0030 Nicotiana tabacum HOM05D006148 ORTHO05D007955 6.8e-30 134.0 113 62.8
Oeu017209.1 Olea europaea HOM05D006148 ORTHO05D007955 1.2e-29 133.3 113 63.7
VMungo0331G0425 Vigna mungo HOM05D006148 ORTHO05D007955 1.2e-29 133.3 113 65.5
Duzib068G0643 Durio zibethinus HOM05D006148 ORTHO05D007955 1.5e-29 132.9 113 64.6
Prupe.5G058400 Prunus persica HOM05D006148 ORTHO05D007955 2.6e-29 132.1 113 63.7
Nitab4.5_0000506g0080 Nicotiana tabacum HOM05D006148 ORTHO05D007955 3.4e-29 131.7 113 61.9
TWI15G0129 Tripterygium wilfordii HOM05D006148 ORTHO05D007955 4.4e-29 131.3 113 62.8
ClCG09G012770 Citrullus lanatus HOM05D006148 ORTHO05D007955 5.7e-29 131.0 113 61.9
Glyma.16G092500 Glycine max HOM05D006148 ORTHO05D007955 5.7e-29 131.0 113 61.1
PSO541G2943 Papaver somniferum HOM05D006148 ORTHO05D007955 5.7e-29 131.0 113 62.8
PGSC0003DMG400026577 Solanum tuberosum HOM05D006148 ORTHO05D007955 5.7e-29 131.0 113 60.2
TPR.G30538 Trifolium pratense HOM05D006148 ORTHO05D007955 5.7e-29 131.0 113 61.9
Lalb_Chr15g0078661 Lupinus albus HOM05D006148 ORTHO05D007955 7.5e-29 130.6 113 61.9
Phvul.010G018500 Phaseolus vulgaris HOM05D006148 ORTHO05D007955 7.5e-29 130.6 113 61.1
Ca_20510_v3 Cicer arietinum L. HOM05D006148 ORTHO05D007955 9.8e-29 130.2 113 62.8
RcHm_v2.0_Chr7g0205301 Rosa chinensis HOM05D006148 ORTHO05D007955 9.8e-29 130.2 113 62.8
Solyc06g060920.3 Solanum lycopersicum HOM05D006148 ORTHO05D007955 9.8e-29 130.2 113 60.2
Sopen06g021070 Solanum pennellii HOM05D006148 ORTHO05D007955 9.8e-29 130.2 113 60.2
Atru.chr9.1220 Acer truncatum HOM05D006148 ORTHO05D007955 1.3e-28 129.8 113 61.9
Gohir.D12G216200 Gossypium hirsutum HOM05D006148 ORTHO05D007955 1.3e-28 129.8 113 62.8
Gorai.008G231600 Gossypium raimondii HOM05D006148 ORTHO05D007955 1.3e-28 129.8 113 62.8
DCAR_005581 Daucus carota HOM05D006148 ORTHO05D007955 1.7e-28 129.4 113 61.1
Gohir.A12G213600 Gossypium hirsutum HOM05D006148 ORTHO05D007955 1.7e-28 129.4 113 61.9
Lj2A228G47 Lonicera japonica HOM05D006148 ORTHO05D007955 2.2e-28 129.0 112 61.6
MD04G1051900 Malus domestica HOM05D006148 ORTHO05D007955 2.2e-28 129.0 113 62.8
MD06G1048200 Malus domestica HOM05D006148 ORTHO05D007955 2.2e-28 129.0 113 62.8
Medtr3g086600 Medicago truncatula HOM05D006148 ORTHO05D007955 2.2e-28 129.0 113 59.3
Lj3g0001636 Lotus japonicus HOM05D006148 ORTHO05D007955 2.8e-28 128.6 113 61.9
Potri.012G038600 Populus trichocarpa HOM05D006148 ORTHO05D007955 2.8e-28 128.6 113 61.9
CANSAT21G1845 Cannabis sativa HOM05D006148 ORTHO05D007955 3.7e-28 128.3 113 61.9
Peaxi162Scf00190g00088 Petunia axillaris HOM05D006148 ORTHO05D007955 4.8e-28 127.9 113 59.3
Sed0021147 Sechium edule HOM05D006148 ORTHO05D007955 4.8e-28 127.9 113 60.2
Nitab4.5_0007628g0010 Nicotiana tabacum HOM05D006148 ORTHO05D007955 6.3e-28 127.5 113 60.2
Psat5g091640 Pisum sativum HOM05D006148 ORTHO05D007955 6.3e-28 127.5 113 59.3
Rhsim07G0118700 Rhododendron simsii HOM05D006148 ORTHO05D007955 6.3e-28 127.5 132 57.6
THA.LOC104814463 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 8.3e-28 127.1 112 61.6
Solyc08g077970.2 Solanum lycopersicum HOM05D006148 ORTHO05D007955 1.1e-27 126.7 113 60.2
Sed0014825 Sechium edule HOM05D006148 ORTHO05D007955 1.4e-27 126.3 113 59.3
PSO675G9254 Papaver somniferum HOM05D006148 ORTHO05D007955 1.8e-27 125.9 111 61.3
Sopen08g026480 Solanum pennellii HOM05D006148 ORTHO05D007955 1.8e-27 125.9 113 60.2
CsaV3_3G049830 Cucumis sativus L. HOM05D006148 ORTHO05D007955 2.4e-27 125.6 113 60.2
FvH4_5g20230 Fragaria vesca HOM05D006148 ORTHO05D007955 2.4e-27 125.6 113 61.1
PGSC0003DMG400026249 Solanum tuberosum HOM05D006148 ORTHO05D007955 3.1e-27 125.2 113 59.3
HPP92_005702 Vanilla planifolia HOM05D006148 ORTHO05D007955 5.4e-27 124.4 113 61.9
FAN13G2154 Fragaria x ananassa HOM05D006148 ORTHO05D007955 7.0e-27 124.0 113 60.2
FAN13G3051 Fragaria x ananassa HOM05D006148 ORTHO05D007955 7.0e-27 124.0 113 60.2
MELO3C003333.2 Cucumis melo HOM05D006148 ORTHO05D007955 1.2e-26 123.2 113 58.4
THA.LOC104807925 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 1.2e-26 123.2 112 59.8
CDE04G1348 Ceratophyllum demersum HOM05D006148 ORTHO05D007955 2.0e-26 122.5 113 58.4
SalBow1G4160 Salvia bowleyana HOM05D006148 ORTHO05D007955 5.9e-26 120.9 113 57.5
Carub.0007s2441 Capsella rubella HOM05D006148 ORTHO05D007955 1.0e-25 120.2 112 55.4
Aa31LG2G13090 Aethionema arabicum HOM05D006148 ORTHO05D007955 1.3e-25 119.8 110 58.2
A01p20300 Brassica napus HOM05D006148 ORTHO05D007955 1.7e-25 119.4 112 57.1
BolC1t02497H Brassica oleracea HOM05D006148 ORTHO05D007955 1.7e-25 119.4 112 56.2
CAN.G761.17 Capsicum annuum HOM05D006148 ORTHO05D007955 1.7e-25 119.4 113 56.6
BcaC09g50434 Brassica carinata HOM05D006148 ORTHO05D007955 2.3e-25 119.0 112 56.2
BcaNung00135 Brassica carinata HOM05D006148 ORTHO05D007955 2.3e-25 119.0 112 56.2
BraA01t01958Z Brassica rapa HOM05D006148 ORTHO05D007955 2.3e-25 119.0 112 56.2
DCAR_008334 Daucus carota HOM05D006148 ORTHO05D007955 2.3e-25 119.0 113 58.4
THA.LOC104812735 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 2.3e-25 119.0 112 57.1
C01p25460 Brassica napus HOM05D006148 ORTHO05D007955 2.9e-25 118.6 112 55.4
Sc22g0005540 Simmondsia chinensis HOM05D006148 ORTHO05D007955 6.5e-25 117.5 109 58.7
arahy.Tifrunner.gnm1.ann1.0GR2GF Arachis hypogaea HOM05D006148 ORTHO05D007955 8.6e-25 117.1 113 54.0
arahy.Tifrunner.gnm1.ann1.L2DS42 Arachis hypogaea HOM05D006148 ORTHO05D007955 8.6e-25 117.1 113 54.0
Sabra12G0027000 Salix brachista HOM05D006148 ORTHO05D007955 8.6e-25 117.1 124 54.0
Sp7g17180 Schrenkiella parvula HOM05D006148 ORTHO05D007955 2.5e-24 115.5 112 54.5
ECA248G1075 Erigeron canadensis HOM05D006148 ORTHO05D007955 5.5e-24 114.4 113 51.3
Lj3A721T48 Lonicera japonica HOM05D006148 ORTHO05D007955 5.5e-24 114.4 102 60.8
Lsat_1_v5_gn_3_16181 Lactuca sativa HOM05D006148 ORTHO05D007955 9.5e-24 113.6 113 53.1
FAN04G0567 Fragaria x ananassa HOM05D006148 ORTHO05D007955 1.6e-23 112.8 135 51.1
HanXRQChr17g0550021 Helianthus annuus HOM05D006148 ORTHO05D007955 1.6e-23 112.8 113 52.2
COL.COLO4_07508 Corchorus olitorius HOM05D006148 ORTHO05D007955 2.8e-23 112.1 113 54.9
Hund11457 Selenicereus undatus HOM05D006148 ORTHO05D007955 4.7e-23 111.3 103 60.2
Nn1g00796 Nelumbo nucifera HOM05D006148 ORTHO05D007955 1.0e-22 110.2 110 58.2
EL10Ac5g12797 Beta vulgaris HOM05D006148 ORTHO05D007955 1.8e-22 109.4 109 52.3
FAN08G3523 Fragaria x ananassa HOM05D006148 ORTHO05D007955 1.8e-22 109.4 144 47.9
ATR0767G234 Amborella trichopoda HOM05D006148 ORTHO05D007955 2.3e-22 109.0 102 59.8
Os04g0431800 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 2.3e-22 109.0 113 54.0
Haze_05448 Corylus avellana HOM05D006148 ORTHO05D007955 2.0e-21 105.9 175 42.9
AT4G17010 Arabidopsis thaliana HOM05D006148 ORTHO05D007955 3.4e-21 105.1 112 51.8
Zm00001eb422600 Zea mays HOM05D006148 ORTHO05D007955 4.4e-21 104.8 107 55.1
AUR62017180 Chenopodium quinoa HOM05D006148 ORTHO05D007955 5.7e-21 104.4 109 48.6
Os02g0494600 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 5.7e-21 104.4 113 52.2
Thhalv10026445m.g Eutrema salsugineum HOM05D006148 ORTHO05D007955 3.7e-20 101.7 112 50.9
vmacro00048 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 3.7e-20 101.7 76 68.4
CARHR223570 Cardamine hirsuta HOM05D006148 ORTHO05D007955 1.1e-19 100.1 110 49.1
AL7G37710 Arabidopsis lyrata HOM05D006148 ORTHO05D007955 4.1e-19 98.2 112 49.1
MBI06_g25325_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 4.1e-19 98.2 78 71.8
QL12p009037 Quercus lobata HOM05D006148 ORTHO05D007955 1.6e-18 96.3 76 63.2
Lj2A721G5 Lonicera japonica HOM05D006148 ORTHO05D007955 1.4e-14 83.2 73 64.4
SEGI_12345 Sequoiadendron giganteum HOM05D006148 ORTHO05D007955 1.7e-12 76.3 111 39.6
Ah.07g196390 Amaranthus hybridus HOM05D006148 ORTHO05D007955 6.0e-10 67.8 72 52.8
Cpa.g.sc1152.2 Carica papaya HOM05D006148 ORTHO05D007955 3.3e-08 62.0 52 67.3
Nitab4.5_0000500g0150 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.2e-07 60.1 75 46.7


User provided reference genes

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