Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 3.3e-29 131.0 63 100.0
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 5.3e-11 70.5 50 74.0
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 6.9e-11 70.1 48 79.2
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 6.9e-11 70.1 48 79.2
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.2e-10 69.3 46 78.3
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.5e-10 68.9 48 77.1
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 2.0e-10 68.6 47 76.6
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.0e-10 68.6 48 75.0
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.0e-10 68.6 48 75.0
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 3.4e-10 67.8 48 72.9
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 3.4e-10 67.8 48 75.0
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 3.4e-10 67.8 48 75.0
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 3.4e-10 67.8 48 75.0
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 4.5e-10 67.4 46 76.1
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 4.5e-10 67.4 46 76.1
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 4.5e-10 67.4 46 78.3
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 4.5e-10 67.4 46 76.1
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 5.9e-10 67.0 46 76.1
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 7.7e-10 66.6 50 72.0
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.0e-09 66.2 48 72.9
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.0e-09 66.2 48 72.9
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.0e-09 66.2 48 72.9
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.3e-09 65.9 48 68.8
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.3e-09 65.9 46 73.9
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.3e-09 65.9 48 72.9
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.9e-09 64.7 51 66.7
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 3.8e-09 64.3 46 67.4
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 5.0e-09 63.9 46 71.7
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.0e-09 63.9 48 66.7
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 5.0e-09 63.9 48 70.8
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 5.0e-09 63.9 39 84.6
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 8.5e-09 63.2 50 66.0
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.5e-09 63.2 48 64.6
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 8.5e-09 63.2 46 73.9
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 8.5e-09 63.2 48 68.8
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.1e-08 62.8 48 68.8
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.1e-08 62.8 50 64.0
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.4e-08 62.4 46 69.6
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 1.4e-08 62.4 48 68.8
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 2.5e-08 61.6 48 64.6
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 2.5e-08 61.6 46 71.7
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 2.5e-08 61.6 48 66.7
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.2e-08 61.2 48 66.7
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.2e-08 61.2 48 66.7
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 5.5e-08 60.5 46 69.6
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 5.5e-08 60.5 46 67.4
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 5.5e-08 60.5 48 66.7
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 5.5e-08 60.5 48 66.7
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 5.5e-08 60.5 48 66.7
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 5.5e-08 60.5 46 69.6
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 5.5e-08 60.5 48 66.7
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.5e-08 60.5 41 78.0
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 9.4e-08 59.7 46 69.6
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 9.4e-08 59.7 48 66.7
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 9.4e-08 59.7 48 62.5
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.2e-07 59.3 48 64.6
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 1.6e-07 58.9 48 64.6
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 2.1e-07 58.5 48 60.4
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 2.1e-07 58.5 48 60.4
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.1e-07 58.5 48 64.6
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.6e-07 57.8 46 65.2
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 3.6e-07 57.8 48 64.6
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 4.6e-07 57.4 48 64.6
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.6e-07 57.4 48 64.6
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 6.1e-07 57.0 48 62.5
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 6.1e-07 57.0 48 64.6
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 6.1e-07 57.0 37 78.4
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 7.9e-07 56.6 45 66.7
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.0e-06 56.2 46 63.0
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.0e-06 56.2 50 60.0
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.4e-06 55.8 48 62.5
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 2.3e-06 55.1 37 75.7
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 2.3e-06 55.1 48 58.3
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 2.3e-06 55.1 48 62.5
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 3.0e-06 54.7 48 56.2
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 3.0e-06 54.7 48 60.4
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 3.9e-06 54.3 47 55.3
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 3.9e-06 54.3 46 56.5
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 3.9e-06 54.3 48 58.3
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 5.1e-06 53.9 41 63.4
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 6.7e-06 53.5 48 56.2
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 6.7e-06 53.5 48 60.4
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 8.8e-06 53.1 48 60.4


User provided reference genes

Program Settings