Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 3.1e-57 224.9 117 100.0
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 5.9e-56 220.7 117 96.6
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.0e-55 219.9 117 96.6
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.7e-55 219.2 117 96.6
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.2e-55 218.8 117 95.7
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.2e-55 218.8 117 95.7
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.2e-55 218.8 117 96.6
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 2.9e-55 218.4 117 95.7
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 2.9e-55 218.4 117 95.7
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 6.5e-55 217.2 117 95.7
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 1.9e-54 215.7 117 95.7
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 5.5e-54 214.2 117 93.2
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 9.4e-54 213.4 117 91.5
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 9.4e-54 213.4 117 93.2
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 1.2e-53 213.0 117 92.3
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 1.2e-53 213.0 117 92.3
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.2e-53 213.0 117 92.3
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 2.1e-53 212.2 117 92.3
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.7e-53 211.8 117 94.0
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 6.1e-53 210.7 117 92.3
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 8.0e-53 210.3 112 94.6
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.0e-52 209.9 113 94.7
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 1.4e-52 209.5 118 93.2
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 1.4e-52 209.5 117 89.7
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 1.8e-52 209.1 113 93.8
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 3.0e-52 208.4 117 92.3
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 3.0e-52 208.4 118 92.4
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 4.0e-52 208.0 118 91.5
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 4.0e-52 208.0 118 92.4
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 5.2e-52 207.6 118 92.4
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.2e-52 207.6 117 88.9
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.2e-52 207.6 117 88.9
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 6.7e-52 207.2 113 94.7
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 6.7e-52 207.2 118 91.5
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 8.8e-52 206.8 118 91.5
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.2e-51 206.5 113 93.8
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 1.2e-51 206.5 119 90.8
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.2e-51 206.5 113 93.8
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 1.2e-51 206.5 118 91.5
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 1.5e-51 206.1 114 91.2
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 1.5e-51 206.1 114 91.2
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 1.5e-51 206.1 114 91.2
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.5e-51 206.1 113 92.9
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 2.0e-51 205.7 113 93.8
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 2.6e-51 205.3 113 94.7
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 2.6e-51 205.3 114 92.1
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 2.6e-51 205.3 120 88.3
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 3.3e-51 204.9 113 92.0
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 3.3e-51 204.9 120 89.2
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 4.4e-51 204.5 117 92.3
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.7e-51 204.1 118 90.7
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.7e-51 204.1 118 91.5
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.7e-51 204.1 118 91.5
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 5.7e-51 204.1 118 91.5
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 5.7e-51 204.1 113 92.0
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 7.5e-51 203.8 113 92.9
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 7.5e-51 203.8 113 91.2
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.3e-50 203.0 117 88.9
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.3e-50 203.0 117 88.0
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 92.0
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.3e-50 203.0 117 85.5
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 92.9
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 1.7e-50 202.6 114 90.4
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.2e-50 202.2 113 91.2
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 2.2e-50 202.2 113 91.2
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 2.2e-50 202.2 113 91.2
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 2.8e-50 201.8 114 91.2
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 2.8e-50 201.8 119 89.1
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.8e-50 201.8 117 89.7
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 3.7e-50 201.4 113 91.2
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 3.7e-50 201.4 113 91.2
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 91.2
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 90.3
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 8.2e-50 200.3 113 90.3
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 8.2e-50 200.3 117 91.5
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 1.1e-49 199.9 113 91.2
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 1.1e-49 199.9 114 91.2
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 1.1e-49 199.9 113 91.2
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 90.3
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 90.3
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 90.3
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 90.3
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.8e-49 199.1 113 91.2
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 2.4e-49 198.7 114 91.2
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 3.1e-49 198.4 110 95.5
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 3.1e-49 198.4 117 86.3
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 90.3
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 90.3
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 89.4
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 89.4
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 7.0e-49 197.2 113 89.4
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 7.0e-49 197.2 113 89.4
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 7.0e-49 197.2 113 87.6
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 7.0e-49 197.2 113 89.4
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 7.0e-49 197.2 113 91.2
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 9.1e-49 196.8 114 87.7
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 88.5
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 88.5
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 88.6
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 88.6
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.7e-48 195.3 118 87.3
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.5e-48 194.5 114 87.7
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 4.5e-48 194.5 113 88.5
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 7.7e-48 193.7 113 87.6
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 7.7e-48 193.7 114 87.7
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 7.7e-48 193.7 114 88.6
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 1.3e-47 193.0 105 94.3
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 1.3e-47 193.0 110 90.0
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 1.3e-47 193.0 114 88.6
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 2.2e-47 192.2 113 85.8
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 2.9e-47 191.8 111 88.3
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 3.8e-47 191.4 114 86.8
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 6.5e-47 190.7 111 87.4
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 8.5e-47 190.3 113 86.7
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 1.1e-46 189.9 114 81.6
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 1.5e-46 189.5 113 85.0
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.5e-46 188.7 114 85.1
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 2.5e-46 188.7 127 81.1
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 5.5e-46 187.6 113 84.1
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 9.4e-46 186.8 111 86.5
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 1.6e-45 186.0 110 86.4
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 1.6e-45 186.0 113 85.0
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 2.7e-45 185.3 149 71.1
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 3.6e-45 184.9 113 85.0
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 6.1e-45 184.1 113 85.0
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 4.0e-44 181.4 109 83.5
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 5.2e-44 181.0 113 81.4
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 1.5e-43 179.5 117 76.1
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.3e-42 176.4 178 60.7
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.2e-42 175.6 114 72.8
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.7e-40 168.7 122 79.5
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 2.9e-39 165.2 107 76.6
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 2.5e-38 162.2 89 87.6
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 7.2e-38 160.6 197 51.3
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 4.7e-37 157.9 88 90.9
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 2.0e-35 152.5 85 92.9
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.8e-34 148.7 99 80.8
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 4.9e-34 147.9 86 86.0
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 6.3e-34 147.5 86 89.5
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 1.1e-33 146.7 85 89.4
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.1e-33 146.7 85 88.2
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 1.6e-32 142.9 81 87.7
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 2.7e-32 142.1 72 94.4
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.0e-31 140.2 82 87.8
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 3.8e-31 138.3 73 93.2
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 3.3e-30 135.2 105 70.5
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 3.3e-30 135.2 105 70.5
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 1.0e-28 130.2 67 94.0
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 4.4e-27 124.8 109 59.6
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.3e-26 123.2 80 82.5
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.3e-26 123.2 70 92.9
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 6.4e-26 120.9 70 91.4
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 7.0e-25 117.5 83 77.1
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.2e-24 116.7 97 55.7
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.7e-23 112.8 71 83.1
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 3.1e-20 102.1 72 70.8
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 2.0e-19 99.4 104 59.6
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.3e-15 86.7 47 89.4
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 7.5e-11 70.9 48 77.1
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 1.1e-09 67.0 43 81.4
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 3.2e-09 65.5 41 82.9
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 3.2e-09 65.5 41 82.9
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 4.6e-08 61.6 59 64.4
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 1.7e-07 59.7 42 78.6
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 1.7e-07 59.7 42 76.2


User provided reference genes

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