Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0804F.1_g220940 Hydrangea macrophylla HOM05D001974 ORTHO05D036416 8.0e-48 193.4 93 100.0
Hma1.2p1_1807F.1_g303405 Hydrangea macrophylla HOM05D001974 ORTHO05D036416 8.0e-48 193.4 93 100.0
Rhsim13G0001000 Rhododendron simsii HOM05D001974 ORTHO05D001995 4.6e-19 97.8 57 77.2
Actinidia06389 Actinidia chinensis HOM05D001974 ORTHO05D001995 7.8e-19 97.1 57 77.2
Lj2C1212G6 Lonicera japonica HOM05D001974 ORTHO05D001995 2.3e-18 95.5 57 73.7
Lj2g0018756 Lotus japonicus HOM05D001974 ORTHO05D001995 3.0e-18 95.1 57 71.9
THA.LOC104801322 Tarenaya hassleriana HOM05D001974 ORTHO05D001995 5.1e-18 94.4 53 77.4
MSTRG.18067 Avicennia marina HOM05D001974 ORTHO05D001995 1.1e-17 93.2 57 71.9
TWI59G0571 Tripterygium wilfordii HOM05D001974 ORTHO05D001995 1.9e-17 92.4 54 75.9
CSS0004499 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 3.3e-17 91.7 57 70.2
TAR636G2583 Trochodendron aralioides HOM05D001974 ORTHO05D001995 3.3e-17 91.7 57 70.2
Eucgr.H00884 Eucalyptus grandis HOM05D001974 ORTHO05D001995 4.3e-17 91.3 59 69.5
AL6G51430 Arabidopsis lyrata HOM05D001974 ORTHO05D001995 7.3e-17 90.5 54 74.1
Ciclev10019102m.g Citrus clementina HOM05D001974 ORTHO05D001995 7.3e-17 90.5 57 70.2
Carub.0006s3537 Capsella rubella HOM05D001974 ORTHO05D001995 9.6e-17 90.1 54 72.2
AT4G01870 Arabidopsis thaliana HOM05D001974 ORTHO05D001995 1.2e-16 89.7 54 74.1
Prupe.3G004400 Prunus persica HOM05D001974 ORTHO05D001995 1.2e-16 89.7 57 66.7
Haze_05115 Corylus avellana HOM05D001974 ORTHO05D001995 1.6e-16 89.4 57 68.4
HanXRQChr15g0464331 Helianthus annuus HOM05D001974 ORTHO05D001995 1.6e-16 89.4 57 71.9
CSS0014853 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 2.1e-16 89.0 57 73.7
CSS0034750 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 2.1e-16 89.0 57 73.7
Nn3g21869 Nelumbo nucifera HOM05D001974 ORTHO05D001995 2.1e-16 89.0 53 67.9
Migut.D00029 Erythranthe guttata HOM05D001974 ORTHO05D001995 2.8e-16 88.6 53 73.6
PGR083G1801 Punica granatum HOM05D001974 ORTHO05D001995 2.8e-16 88.6 59 72.9
Thhalv10029281m.g Eutrema salsugineum HOM05D001974 ORTHO05D001995 3.6e-16 88.2 53 73.6
Cfa004877 Carpinus fangiana HOM05D001974 ORTHO05D001995 4.7e-16 87.8 57 68.4
Eucgr.L00886 Eucalyptus grandis HOM05D001974 ORTHO05D001995 4.7e-16 87.8 55 70.9
Sopen06g004100 Solanum pennellii HOM05D001974 ORTHO05D001995 6.2e-16 87.4 57 68.4
BcaB01g02384 Brassica carinata HOM05D001974 ORTHO05D001995 8.1e-16 87.0 53 71.7
BcaC01g06800 Brassica carinata HOM05D001974 ORTHO05D001995 8.1e-16 87.0 53 71.7
A03p31450 Brassica napus HOM05D001974 ORTHO05D001995 8.1e-16 87.0 53 71.7
C03p38400 Brassica napus HOM05D001974 ORTHO05D001995 8.1e-16 87.0 53 71.7
C03p38440 Brassica napus HOM05D001974 ORTHO05D001995 8.1e-16 87.0 53 71.7
BolC3t16118H Brassica oleracea HOM05D001974 ORTHO05D001995 8.1e-16 87.0 53 71.7
BraA03t12326Z Brassica rapa HOM05D001974 ORTHO05D001995 8.1e-16 87.0 53 71.7
Ca_12551_v3 Cicer arietinum L. HOM05D001974 ORTHO05D001995 8.1e-16 87.0 59 66.1
Lalb_Chr10g0095771 Lupinus albus HOM05D001974 ORTHO05D001995 8.1e-16 87.0 57 66.7
CARHR249830 Cardamine hirsuta HOM05D001974 ORTHO05D001995 1.1e-15 86.7 53 71.7
HanXRQChr12g0365851 Helianthus annuus HOM05D001974 ORTHO05D001995 1.1e-15 86.7 57 71.9
QL12p034323 Quercus lobata HOM05D001974 ORTHO05D001995 1.1e-15 86.7 57 66.7
vmacro02371 Vaccinium macrocarpon HOM05D001974 ORTHO05D001995 1.1e-15 86.7 57 71.9
FvH4_1g26490 Fragaria vesca HOM05D001974 ORTHO05D001995 1.4e-15 86.3 57 66.7
VMungo1215G1833 Vigna mungo HOM05D001974 ORTHO05D001995 1.8e-15 85.9 57 64.9
FAN19G0107 Fragaria x ananassa HOM05D001974 ORTHO05D001995 2.4e-15 85.5 57 64.9
FAN28G2208 Fragaria x ananassa HOM05D001974 ORTHO05D001995 2.4e-15 85.5 57 66.7
MD17G1281200 Malus domestica HOM05D001974 ORTHO05D001995 2.4e-15 85.5 57 64.9
Nitab4.5_0003324g0120 Nicotiana tabacum HOM05D001974 ORTHO05D001995 2.4e-15 85.5 57 68.4
PGSC0003DMG400034369 Solanum tuberosum HOM05D001974 ORTHO05D001995 2.4e-15 85.5 57 64.9
FAN26G2034 Fragaria x ananassa HOM05D001974 ORTHO05D001995 3.1e-15 85.1 57 64.9
RcHm_v2.0_Chr3g0486551 Rosa chinensis HOM05D001974 ORTHO05D001995 3.1e-15 85.1 57 66.7
Sp6g01710 Schrenkiella parvula HOM05D001974 ORTHO05D001995 3.1e-15 85.1 53 71.7
Thecc.01G322300 Theobroma cacao HOM05D001974 ORTHO05D001995 3.1e-15 85.1 57 68.4
HanXRQChr09g0270411 Helianthus annuus HOM05D001974 ORTHO05D001995 4.0e-15 84.7 57 68.4
MBI04_g36327_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 4.0e-15 84.7 63 60.3
MBI15_g33465_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 4.0e-15 84.7 63 60.3
Glyma.07G168900 Glycine max HOM05D001974 ORTHO05D001995 5.2e-15 84.3 59 66.1
Lsat_1_v5_gn_1_59561 Lactuca sativa HOM05D001974 ORTHO05D001995 5.2e-15 84.3 54 70.4
CAN.G1280.43 Capsicum annuum HOM05D001974 ORTHO05D001995 6.8e-15 84.0 57 63.2
FAN10G4124 Fragaria x ananassa HOM05D001974 ORTHO05D001995 8.9e-15 83.6 57 64.9
CiPaw.07G123300 Carya illinoinensis HOM05D001974 ORTHO05D001995 1.5e-14 82.8 52 67.3
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 1.5e-14 82.8 57 63.2
SalBow6G3361 Salvia bowleyana HOM05D001974 ORTHO05D001995 2.0e-14 82.4 57 68.4
Lsat_1_v5_gn_9_7261 Lactuca sativa HOM05D001974 ORTHO05D001995 2.6e-14 82.0 54 66.7
Medtr1g032010 Medicago truncatula HOM05D001974 ORTHO05D001995 2.6e-14 82.0 59 64.4
Medtr1g032340 Medicago truncatula HOM05D001974 ORTHO05D001995 2.6e-14 82.0 59 64.4
COL.COLO4_23160 Corchorus olitorius HOM05D001974 ORTHO05D001995 3.4e-14 81.6 57 64.9
Eucgr.L00885 Eucalyptus grandis HOM05D001974 ORTHO05D001995 4.4e-14 81.3 55 65.5
COL.COLO4_23159 Corchorus olitorius HOM05D001974 ORTHO05D001995 5.8e-14 80.9 57 66.7
Nitab4.5_0000363g0070 Nicotiana tabacum HOM05D001974 ORTHO05D001995 5.8e-14 80.9 57 66.7
Peaxi162Scf00058g00206 Petunia axillaris HOM05D001974 ORTHO05D001995 7.6e-14 80.5 57 64.9
SalBow6G6290 Salvia bowleyana HOM05D001974 ORTHO05D001995 9.9e-14 80.1 57 63.2
Cc07_g15100 Coffea canephora HOM05D001974 ORTHO05D001995 2.2e-13 79.0 57 61.4
ECA247G0945 Erigeron canadensis HOM05D001974 ORTHO05D001995 2.2e-13 79.0 57 61.4
Sabra02G0166000 Salix brachista HOM05D001974 ORTHO05D001995 2.9e-13 78.6 53 67.9
DCAR_002929 Daucus carota HOM05D001974 ORTHO05D001995 3.8e-13 78.2 57 63.2
Cpa.g.sc543.1 Carica papaya HOM05D001974 ORTHO05D001995 6.4e-13 77.4 50 66.0
CiPaw.07G123200 Carya illinoinensis HOM05D001974 ORTHO05D001995 6.4e-13 77.4 53 67.9
Phvul.003G019700 Phaseolus vulgaris HOM05D001974 ORTHO05D001995 6.4e-13 77.4 57 63.2
Manes.01G233000 Manihot esculenta HOM05D001974 ORTHO05D001995 8.4e-13 77.0 57 61.4
Medtr1g032300 Medicago truncatula HOM05D001974 ORTHO05D001995 1.4e-12 76.3 59 59.3
SGA_v2.0_scaffold80G25694 Striga asiatica HOM05D001974 ORTHO05D001995 1.9e-12 75.9 57 66.7
AUR62011735 Chenopodium quinoa HOM05D001974 ORTHO05D001995 2.4e-12 75.5 61 59.0
RcHm_v2.0_Chr6g0277001 Rosa chinensis HOM05D001974 ORTHO05D036416 4.2e-12 74.7 53 62.3
Sed0012789 Sechium edule HOM05D001974 ORTHO05D001995 4.2e-12 74.7 52 67.3
ClCG09G004670 Citrullus lanatus HOM05D001974 ORTHO05D001995 5.4e-12 74.3 53 69.8
Duzib138G0137 Durio zibethinus HOM05D001974 ORTHO05D001995 5.4e-12 74.3 57 61.4
Ah.11g045770 Amaranthus hybridus HOM05D001974 ORTHO05D001995 9.3e-12 73.6 61 54.1
Lj2g0019143 Lotus japonicus HOM05D001974 ORTHO05D001995 9.3e-12 73.6 59 61.0
MELO3C023609.2 Cucumis melo HOM05D001974 ORTHO05D001995 1.6e-11 72.8 53 67.9
Gohir.A07G130600 Gossypium hirsutum HOM05D001974 ORTHO05D001995 1.6e-11 72.8 57 59.6
Gorai.001G146700 Gossypium raimondii HOM05D001974 ORTHO05D001995 1.6e-11 72.8 57 59.6
unitig_578.g16639 Utricularia gibba HOM05D001974 ORTHO05D001995 1.6e-11 72.8 83 48.2
Psat6g045760 Pisum sativum HOM05D001974 ORTHO05D001995 2.7e-11 72.0 58 58.6
Solyc06g008620.1 Solanum lycopersicum HOM05D001974 ORTHO05D001995 6.0e-11 70.9 54 63.0
Ca_12550_v3 Cicer arietinum L. HOM05D001974 ORTHO05D001995 7.8e-11 70.5 59 59.3
Aqoxy2G02566 Aquilegia oxysepala HOM05D001974 ORTHO05D001995 1.0e-10 70.1 57 59.6
CAN.G1449.1 Capsicum annuum HOM05D001974 ORTHO05D001995 1.0e-10 70.1 57 59.6
Gohir.D07G135000 Gossypium hirsutum HOM05D001974 ORTHO05D001995 1.0e-10 70.1 57 57.9
PGSC0003DMG400005339 Solanum tuberosum HOM05D001974 ORTHO05D001995 1.7e-10 69.3 54 61.1
MBI19_g32710_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 3.0e-10 68.6 61 54.1
Sopen06g003390 Solanum pennellii HOM05D001974 ORTHO05D001995 3.9e-10 68.2 54 59.3
CsaV3_7G030440 Cucumis sativus L. HOM05D001974 ORTHO05D001995 6.6e-10 67.4 53 66.0
SHI23995 Sapria himalayana HOM05D001974 ORTHO05D001995 1.9e-09 65.9 57 57.9
ATR0796G130 Amborella trichopoda HOM05D001974 ORTHO05D001995 5.6e-09 64.3 58 51.7
Sc23g0004580 Simmondsia chinensis HOM05D001974 ORTHO05D001995 5.6e-09 64.3 58 56.9
Zm00001eb328760 Zea mays HOM05D001974 ORTHO05D001995 1.3e-08 63.2 57 49.1
PSO675G9146 Papaver somniferum HOM05D001974 ORTHO05D001995 1.6e-08 62.8 53 49.1
Eucgr.H00885 Eucalyptus grandis HOM05D001974 ORTHO05D001995 2.1e-08 62.4 37 81.1
PSO017G0481 Papaver somniferum HOM05D001974 ORTHO05D001995 3.6e-08 61.6 53 49.1
EL10As5g23581 Beta vulgaris HOM05D001974 ORTHO05D001995 4.8e-08 61.2 66 50.0
Os07g0638100 Oryza sativa ssp. japonica HOM05D001974 ORTHO05D001995 6.9e-07 57.4 50 44.0


User provided reference genes

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