Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 1.1e-65 253.1 121 100.0
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 4.5e-51 204.5 121 80.2
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 4.5e-51 204.5 117 82.1
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 5.9e-51 204.1 121 83.5
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.7e-50 202.6 121 75.2
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 2.9e-50 201.8 121 76.9
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 8.5e-50 200.3 121 78.5
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 1.5e-49 199.5 118 78.0
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.5e-49 198.7 114 82.5
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 4.2e-49 198.0 121 73.6
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 5.5e-49 197.6 121 77.7
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.5e-49 197.6 121 77.7
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 5.5e-49 197.6 119 78.2
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 5.5e-49 197.6 119 77.3
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 5.5e-49 197.6 119 77.3
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 9.4e-49 196.8 116 79.3
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 9.4e-49 196.8 116 79.3
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.2e-48 196.4 120 75.8
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 1.2e-48 196.4 109 85.3
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.7e-48 195.3 121 76.9
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 3.6e-48 194.9 121 74.4
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 4.7e-48 194.5 116 78.4
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 6.1e-48 194.1 119 76.5
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 8.0e-48 193.7 115 80.0
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 1.0e-47 193.4 117 77.8
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 1.0e-47 193.4 120 75.8
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.0e-47 193.4 120 75.8
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.4e-47 193.0 115 78.3
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.4e-47 193.0 121 72.7
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.4e-47 193.0 121 73.6
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 6.8e-47 190.7 112 79.5
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 1.2e-46 189.9 112 79.5
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 1.2e-46 189.9 114 78.1
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 1.5e-46 189.5 107 84.1
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 2.6e-46 188.7 121 74.4
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 2.6e-46 188.7 121 71.9
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 4.4e-46 188.0 116 75.0
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 1.3e-45 186.4 117 75.2
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.2e-45 185.7 114 75.4
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.8e-45 185.3 107 83.2
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.8e-45 184.5 121 74.4
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 6.3e-45 184.1 118 74.6
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 6.3e-45 184.1 120 71.7
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 6.3e-45 184.1 121 71.9
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 8.3e-45 183.7 114 75.4
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.1e-44 183.3 114 74.6
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 1.4e-44 183.0 120 71.7
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 1.4e-44 183.0 113 74.3
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 1.8e-44 182.6 113 75.2
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 2.4e-44 182.2 117 73.5
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 2.4e-44 182.2 121 71.9
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 2.4e-44 182.2 114 74.6
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 3.1e-44 181.8 120 70.8
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 3.1e-44 181.8 120 70.8
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 3.1e-44 181.8 120 70.8
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 3.1e-44 181.8 120 70.8
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 4.1e-44 181.4 119 72.3
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 4.1e-44 181.4 119 72.3
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 4.1e-44 181.4 112 74.1
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 5.4e-44 181.0 113 73.5
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 7.0e-44 180.6 115 73.0
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 9.1e-44 180.3 115 73.0
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 1.2e-43 179.9 112 72.3
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 1.6e-43 179.5 115 73.0
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 1.6e-43 179.5 115 73.0
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 1.6e-43 179.5 114 73.7
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 2.0e-43 179.1 115 73.0
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 3.5e-43 178.3 119 70.6
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 3.5e-43 178.3 114 73.7
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 4.5e-43 177.9 113 69.9
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 4.5e-43 177.9 108 76.9
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 4.5e-43 177.9 108 76.9
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.0e-42 176.8 113 69.9
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 1.0e-42 176.8 118 70.3
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.3e-42 176.4 113 69.9
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 1.7e-42 176.0 114 69.3
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 1.7e-42 176.0 119 70.6
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 3.8e-42 174.9 115 71.3
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 3.8e-42 174.9 114 71.1
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 3.8e-42 174.9 114 71.1
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 3.8e-42 174.9 121 71.1
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 3.8e-42 174.9 114 70.2
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 3.8e-42 174.9 117 70.1
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 5.0e-42 174.5 117 70.1
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 5.0e-42 174.5 117 70.1
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 6.5e-42 174.1 114 71.1
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 8.5e-42 173.7 112 69.6
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 1.1e-41 173.3 117 71.8
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 1.5e-41 172.9 121 68.6
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 5.5e-41 171.0 114 70.2
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.6e-40 169.5 108 72.2
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 2.1e-40 169.1 114 68.4
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 2.1e-40 169.1 114 68.4
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 2.8e-40 168.7 114 68.4
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 4.7e-40 167.9 112 72.3
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 4.7e-40 167.9 112 67.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 8.0e-40 167.2 106 72.6
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 4.0e-39 164.9 122 64.8
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.2e-38 163.3 105 69.5
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.2e-38 163.3 108 70.4
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.0e-38 162.5 120 65.0
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 7.5e-38 160.6 113 68.1
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 8.3e-37 157.1 109 66.1
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 1.8e-36 156.0 114 64.9
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 7.3e-33 144.1 122 57.4
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 9.5e-33 143.7 115 60.9
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 1.2e-32 143.3 94 68.1
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 1.6e-32 142.9 119 60.5
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.8e-31 139.4 118 58.5
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 3.0e-31 138.7 105 64.8
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 6.8e-31 137.5 116 58.6
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.4e-28 129.8 76 82.9
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.1e-28 128.3 97 62.9
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 5.0e-26 121.3 130 54.6
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 9.5e-25 117.1 130 53.1
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.6e-24 116.3 136 49.3
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 2.8e-24 115.5 115 51.3
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.0e-23 113.6 106 59.4
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.0e-23 113.6 111 55.9
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 1.4e-23 113.2 106 53.8
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 8.3e-21 104.0 100 47.0
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 7.0e-20 100.9 65 69.2
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.4e-15 86.7 117 37.6
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 7.5e-14 80.9 40 87.5
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 4.9e-13 78.2 86 43.0
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 3.1e-07 58.9 30 86.7


User provided reference genes

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