Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 5.5e-234 813.9 409 100.0
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 5.0e-102 375.6 453 52.5
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 1.4e-67 261.2 453 40.6
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 4.2e-56 223.0 429 41.0
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 1.6e-55 221.1 420 40.0
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 4.3e-53 213.0 438 39.0
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 8.1e-52 208.8 426 37.6
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 4.4e-50 203.0 428 37.9
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 1.4e-48 198.0 419 37.0
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 3.2e-48 196.8 461 36.0
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 4.3e-45 186.4 459 36.4
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 9.9e-42 175.3 411 33.1
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 7.1e-40 169.1 414 37.0
HanXRQChr02g0058051 Helianthus annuus HOM05D008213 ORTHO05D009787 2.8e-36 157.1 400 35.5
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 5.3e-35 152.9 507 31.8
Sc13g0006830 Simmondsia chinensis HOM05D022167 ORTHO05D009787 1.0e-33 148.7 337 37.4
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 8.4e-33 145.6 507 30.6
ECA233G5141 Erigeron canadensis HOM05D008213 ORTHO05D009787 1.6e-31 141.4 346 33.8
ECA248G0875 Erigeron canadensis HOM05D000554 ORTHO05D000860 7.4e-29 132.5 190 46.8
Lsat_1_v5_gn_6_57280 Lactuca sativa HOM05D008213 ORTHO05D009787 1.4e-24 118.2 478 29.9
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 1.9e-24 117.9 427 28.6
ClCG07G015580 Citrullus lanatus HOM05D008213 ORTHO05D009787 9.3e-24 115.5 280 34.3
AUR62015410 Chenopodium quinoa HOM05D022167 ORTHO05D009787 3.5e-23 113.6 372 32.5
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 5.7e-21 106.3 436 28.9
Ah.07g201850 Amaranthus hybridus HOM05D022167 ORTHO05D009787 9.7e-21 105.5 360 31.4
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 1.6e-20 104.8 412 31.6
CsaV3_4G003270 Cucumis sativus L. HOM05D008213 ORTHO05D009787 2.2e-20 104.4 282 33.0
AUR62002285 Chenopodium quinoa HOM05D022167 ORTHO05D009787 6.3e-20 102.8 359 31.2
MELO3C017723.2 Cucumis melo HOM05D008213 ORTHO05D009787 1.4e-19 101.7 285 31.9
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 1.8e-19 101.3 413 30.8
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 3.1e-19 100.5 221 35.3
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 4.1e-19 100.1 214 36.0
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 6.9e-19 99.4 213 35.7
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 6.9e-19 99.4 213 35.7
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 9.0e-19 99.0 213 35.7
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 2.0e-18 97.8 267 31.8
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 3.4e-18 97.1 249 37.3
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 5.9e-18 96.3 450 27.6
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 5.9e-18 96.3 238 34.0
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 1.0e-17 95.5 411 30.2
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 1.0e-17 95.5 436 27.5
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 1.3e-17 95.1 329 29.5
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 1.3e-17 95.1 329 29.5
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 2.9e-17 94.0 410 28.5
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 2.9e-17 94.0 257 32.3
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 6.5e-17 92.8 410 28.3
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 8.5e-17 92.4 455 29.5
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 2.5e-16 90.9 417 27.3
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 4.2e-16 90.1 403 30.3
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 5.5e-16 89.7 259 32.0
ATR0743G282 Amborella trichopoda HOM05D008213 ORTHO05D009787 7.2e-16 89.4 381 29.9
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 9.4e-16 89.0 323 30.0
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 1.6e-15 88.2 454 29.5
Atru.chr3.1540 Acer truncatum HOM05D022167 ORTHO05D009787 2.1e-15 87.8 248 34.7
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 2.1e-15 87.8 442 27.4
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 4.6e-15 86.7 444 27.0
VMungo1127G1898 Vigna mungo HOM05D010840 ORTHO05D009787 6.1e-15 86.3 278 30.2
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 7.9e-15 85.9 453 26.7
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 1.0e-14 85.5 309 31.7
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 1.4e-14 85.1 247 31.2
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 3.0e-14 84.0 432 28.0
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 3.0e-14 84.0 309 33.0
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 3.0e-14 84.0 432 28.0
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 3.0e-14 84.0 262 33.2
MBI08_g22655_MAGBIO Magnolia biondii HOM05D008213 ORTHO05D009787 3.0e-14 84.0 256 26.2
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 3.9e-14 83.6 310 32.6
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 5.1e-14 83.2 309 33.3
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 8.8e-14 82.4 400 24.8
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 1.1e-13 82.0 269 29.7
Phvul.011G055300 Phaseolus vulgaris HOM05D010840 ORTHO05D009787 7.4e-13 79.3 300 28.3
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 3.1e-11 73.9 417 26.1
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 4.1e-11 73.6 210 29.5
Glyma.11G128800 Glycine max HOM05D010840 ORTHO05D009787 6.9e-11 72.8 267 29.6
Lj3P205T14 Lonicera japonica HOM05D008213 ORTHO05D009787 1.2e-10 72.0 137 36.5
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 2.0e-10 71.2 291 26.8
Ca_01266_v3 Cicer arietinum L. HOM05D010840 ORTHO05D009787 4.5e-10 70.1 251 30.7
TPR.G18857 Trifolium pratense HOM05D010840 ORTHO05D009787 1.7e-09 68.2 223 29.1
arahy.Tifrunner.gnm1.ann1.0UQ2B1 Arachis hypogaea HOM05D010840 ORTHO05D009787 2.2e-09 67.8 317 27.1
Glyma.15G030900 Glycine max HOM05D010840 ORTHO05D009787 2.9e-09 67.4 191 31.9
arahy.Tifrunner.gnm1.ann1.JQ8CCA Arachis hypogaea HOM05D010840 ORTHO05D009787 1.4e-08 65.1 316 26.9
VMungo1080G1829 Vigna mungo HOM05D002632 ORTHO05D002881 1.9e-08 64.7 220 31.8
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 1.2e-07 62.0 118 42.4
Medtr2g098610 Medicago truncatula HOM05D010840 ORTHO05D009787 2.1e-07 61.2 324 26.9
PSO675G1160 Papaver somniferum HOM05D008213 ORTHO05D009787 1.0e-06 58.9 422 26.1
Zm00001eb133750 Zea mays HOM05D065009 ORTHO05D009787 1.4e-06 58.5 337 25.5


User provided reference genes

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