Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 2.2e-134 482.3 242 100.0
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 1.9e-85 319.7 229 70.3
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 1.0e-78 297.4 242 64.0
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 1.1e-72 277.3 246 56.1
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 2.5e-69 266.2 217 60.4
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 7.4e-69 264.6 239 56.5
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 2.4e-67 259.6 225 59.6
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 4.5e-66 255.4 240 55.0
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 7.6e-66 254.6 263 52.5
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 7.6e-66 254.6 266 52.6
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 6.5e-65 251.5 242 54.5
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 8.4e-65 251.1 280 51.4
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 1.9e-64 250.0 242 53.7
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 5.5e-64 248.4 238 52.9
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 5.5e-64 248.4 267 50.6
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 2.1e-63 246.5 257 50.6
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 3.9e-62 242.3 252 51.6
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 1.1e-59 234.2 258 50.4
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 2.4e-59 233.0 241 51.5
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 4.1e-59 232.3 259 47.9
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 5.3e-59 231.9 252 50.8
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 3.4e-58 229.2 269 49.4
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 1.0e-57 227.6 246 52.8
FAN02G3335 Fragaria x ananassa HOM05D007633 ORTHO05D008817 8.4e-57 224.6 268 45.9
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 1.2e-55 220.7 261 47.5
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 2.1e-55 219.9 251 49.0
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 4.6e-55 218.8 242 51.2
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 4.6e-55 218.8 244 49.2
FAN22G0362 Fragaria x ananassa HOM05D007633 ORTHO05D008817 6.1e-55 218.4 268 45.1
FvH4_4g16290 Fragaria vesca HOM05D007633 ORTHO05D008817 1.3e-54 217.2 268 45.1
FAN12G0707 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.3e-54 217.2 268 45.1
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 1.8e-54 216.9 256 49.2
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 6.7e-54 214.9 273 46.9
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 4.8e-52 208.8 219 52.1
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 1.1e-51 207.6 230 49.1
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 1.4e-51 207.2 256 46.5
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 3.1e-51 206.1 242 46.7
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 3.1e-51 206.1 292 43.2
vmacro15349 Vaccinium macrocarpon HOM05D007633 ORTHO05D008817 4.1e-51 205.7 229 50.2
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 3.4e-50 202.6 162 61.1
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 3.4e-50 202.6 254 44.1
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 5.9e-50 201.8 251 43.4
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 7.7e-50 201.4 211 46.0
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 1.0e-49 201.1 269 45.0
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 2.9e-49 199.5 236 45.3
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 6.5e-49 198.4 246 45.9
Nitab4.5_0008118g0020 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.1e-48 197.6 240 45.4
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 5.5e-48 195.3 252 44.8
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 7.9e-47 191.4 263 44.5
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.4e-46 190.7 234 44.0
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 3.0e-46 189.5 213 46.0
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 3.9e-46 189.1 206 49.5
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 5.1e-46 188.7 271 40.2
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 1.5e-45 187.2 226 43.8
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 9.7e-45 184.5 245 41.6
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 9.7e-45 184.5 245 41.6
Peaxi162Scf00192g01119 Petunia axillaris HOM05D007633 ORTHO05D008817 2.2e-44 183.3 234 45.7
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 4.1e-43 179.1 248 42.3
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 7.7e-42 174.9 219 44.7
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 2.2e-41 173.3 259 41.3
CiPaw.01G167500 Carya illinoinensis HOM05D007633 ORTHO05D008817 7.2e-40 168.3 256 40.2
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 7.2e-40 168.3 261 42.5
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 1.6e-39 167.2 275 39.6
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 6.1e-39 165.2 245 41.2
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 5.1e-38 162.2 173 49.7
Nitab4.5_0000321g0150 Nicotiana tabacum HOM05D007633 ORTHO05D008817 8.8e-38 161.4 245 39.2
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 1.1e-37 161.0 232 40.5
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 2.6e-37 159.8 181 49.2
ClCG05G005110 Citrullus lanatus HOM05D007633 ORTHO05D008817 7.4e-37 158.3 262 40.5
PSO210G0191 Papaver somniferum HOM05D007633 ORTHO05D008817 2.8e-36 156.4 235 39.6
FAN07G1430 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.8e-35 153.7 197 43.1
Nitab4.5_0001920g0040 Nicotiana tabacum HOM05D007633 ORTHO05D008817 3.1e-35 152.9 186 45.2
Solyc06g054140.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 4.5e-34 149.1 178 46.1
PSO761G0485 Papaver somniferum HOM05D007633 ORTHO05D008817 5.9e-34 148.7 238 35.3
PSO210G6592 Papaver somniferum HOM05D007633 ORTHO05D008817 1.0e-33 147.9 238 36.1
PSO761G0330 Papaver somniferum HOM05D007633 ORTHO05D008817 2.9e-33 146.4 230 38.7
Hund12119 Selenicereus undatus HOM05D007633 ORTHO05D008817 5.0e-33 145.6 219 36.5
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 6.1e-31 138.7 149 45.6
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 4.0e-30 136.0 231 35.1
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 2.6e-29 133.3 156 44.2
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 3.3e-29 132.9 274 35.4
Ah.04g154590 Amaranthus hybridus HOM05D007633 ORTHO05D008817 5.3e-27 125.6 256 35.2
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 5.3e-27 125.6 112 52.7
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 3.6e-23 112.8 164 39.0
arahy.Tifrunner.gnm1.ann1.5LNY8Z Arachis hypogaea HOM05D007633 ORTHO05D008817 4.8e-20 102.4 187 39.0
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 4.1e-19 99.4 246 27.2
arahy.Tifrunner.gnm1.ann1.VQRK5I Arachis hypogaea HOM05D007633 ORTHO05D008817 5.9e-18 95.5 186 37.1
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 7.7e-18 95.1 158 35.4
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 7.7e-18 95.1 251 31.1
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 7.7e-18 95.1 159 35.2
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 3.8e-17 92.8 178 32.0
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 3.8e-17 92.8 178 32.0
AUR62043551 Chenopodium quinoa HOM05D007633 ORTHO05D008817 3.8e-17 92.8 183 32.8
PGSC0003DMG400016306 Solanum tuberosum HOM05D007633 ORTHO05D008817 3.8e-17 92.8 101 47.5
MD13G1194600 Malus domestica HOM05D007633 ORTHO05D008817 8.5e-17 91.7 152 39.5
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 1.9e-16 90.5 251 27.9
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 3.2e-16 89.7 260 28.1
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 5.5e-16 89.0 268 28.7
EL10Ac3g06495 Beta vulgaris HOM05D007633 ORTHO05D008817 9.4e-16 88.2 249 30.5
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 1.6e-15 87.4 176 29.0
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 2.1e-15 87.0 176 29.0
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 2.1e-15 87.0 176 29.0
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 2.7e-15 86.7 155 31.6
DCAR_030642 Daucus carota HOM05D007633 ORTHO05D008817 8.0e-15 85.1 138 42.0
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 2.0e-13 80.5 132 31.8
TWI73G0180 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 4.1e-11 72.8 100 41.0
Os10g0430800 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 2.0e-10 70.5 229 27.1
Cpa.g.sc58.92 Carica papaya HOM05D000003 ORTHO05D000004 2.3e-09 67.0 53 56.6
MD07G1251800 Malus domestica HOM05D007633 ORTHO05D008817 2.9e-09 66.6 51 56.9
Sabra08G0117600 Salix brachista HOM05D007633 ORTHO05D008817 1.5e-08 64.3 90 42.2
Os10g0430700 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 4.3e-08 62.8 233 24.9
Zm00001eb222870 Zea mays HOM05D026697 ORTHO05D008817 7.3e-08 62.0 147 27.9
MD13G1194800 Malus domestica HOM05D007633 ORTHO05D008817 1.6e-07 60.8 50 60.0
Cpa.g.sc58.94 Carica papaya HOM05D007633 ORTHO05D008817 1.0e-06 58.2 88 35.2
MD13G1194700 Malus domestica HOM05D007633 ORTHO05D008817 1.4e-06 57.8 68 44.1
Os10g0430600 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 1.8e-06 57.4 231 26.0


User provided reference genes

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