Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0745F.1_g211900 Hydrangea macrophylla HOM05D003961 ORTHO05D004528 1.3e-48 196.1 100 100.0
GSVIVG01017963001 Vitis vinifera HOM05D003961 ORTHO05D004528 3.3e-39 164.9 94 85.1
Dinv44530 Davidia involucrata HOM05D003961 ORTHO05D004528 1.6e-38 162.5 94 83.0
Dinv13990 Davidia involucrata HOM05D003961 ORTHO05D004528 4.7e-38 161.0 94 84.0
CAN.G907.4 Capsicum annuum HOM05D003961 ORTHO05D004528 1.2e-36 156.4 94 79.8
Manes.15G028400 Manihot esculenta HOM05D003961 ORTHO05D004528 1.5e-36 156.0 94 76.6
Nn1g02291 Nelumbo nucifera HOM05D003961 ORTHO05D004528 2.6e-36 155.2 94 78.7
Peaxi162Scf00092g01211 Petunia axillaris HOM05D003961 ORTHO05D004528 3.4e-36 154.8 94 78.7
Solyc09g075970.3 Solanum lycopersicum HOM05D003961 ORTHO05D004528 3.4e-36 154.8 94 78.7
PGSC0003DMG400030080 Solanum tuberosum HOM05D003961 ORTHO05D004528 3.4e-36 154.8 94 78.7
COL.COLO4_05309 Corchorus olitorius HOM05D003961 ORTHO05D004528 4.4e-36 154.5 94 80.9
Gohir.D02G038300 Gossypium hirsutum HOM05D003961 ORTHO05D004528 5.8e-36 154.1 94 80.9
Potri.010G088300 Populus trichocarpa HOM05D003961 ORTHO05D004528 5.8e-36 154.1 94 81.9
TAR362G0627 Trochodendron aralioides HOM05D003961 ORTHO05D004528 5.8e-36 154.1 94 77.7
Gohir.A02G031600 Gossypium hirsutum HOM05D003961 ORTHO05D004528 7.6e-36 153.7 94 79.8
Actinidia23507 Actinidia chinensis HOM05D003961 ORTHO05D004528 9.9e-36 153.3 93 79.6
Gorai.005G042200 Gossypium raimondii HOM05D003961 ORTHO05D004528 9.9e-36 153.3 94 79.8
CSS0032523 Camellia sinensis var. sinensis HOM05D003961 ORTHO05D004528 1.3e-35 152.9 94 78.7
Oeu050277.1 Olea europaea HOM05D003961 ORTHO05D004528 1.3e-35 152.9 94 77.7
Sopen09g030800 Solanum pennellii HOM05D003961 ORTHO05D004528 1.3e-35 152.9 94 79.8
Aqoxy5G00479 Aquilegia oxysepala HOM05D003961 ORTHO05D004528 2.2e-35 152.1 94 77.7
QL06p002667 Quercus lobata HOM05D003961 ORTHO05D004528 2.9e-35 151.8 94 77.7
Ciclev10005024m.g Citrus clementina HOM05D003961 ORTHO05D004528 3.8e-35 151.4 92 79.3
Potri.008G152100 Populus trichocarpa HOM05D003961 ORTHO05D004528 3.8e-35 151.4 94 79.8
Actinidia40151 Actinidia chinensis HOM05D003961 ORTHO05D004528 4.9e-35 151.0 93 78.5
DCAR_030632 Daucus carota HOM05D003961 ORTHO05D004528 4.9e-35 151.0 94 74.5
Oeu023394.1 Olea europaea HOM05D003961 ORTHO05D004528 4.9e-35 151.0 93 77.4
CiPaw.02G096900 Carya illinoinensis HOM05D003961 ORTHO05D004528 6.4e-35 150.6 94 78.7
Atru.ctg752_3.90 Acer truncatum HOM05D003961 ORTHO05D004528 8.4e-35 150.2 94 78.7
Cc03_g03700 Coffea canephora HOM05D003961 ORTHO05D004528 8.4e-35 150.2 94 79.8
Lj6A609T80 Lonicera japonica HOM05D003961 ORTHO05D004528 8.4e-35 150.2 94 77.7
Thecc.04G230700 Theobroma cacao HOM05D003961 ORTHO05D004528 8.4e-35 150.2 94 79.8
Sabra08G0115900 Salix brachista HOM05D003961 ORTHO05D004528 1.1e-34 149.8 94 78.7
Duzib052G0053 Durio zibethinus HOM05D003961 ORTHO05D004528 1.4e-34 149.4 94 78.7
Lj5g0020823 Lotus japonicus HOM05D003961 ORTHO05D004528 1.4e-34 149.4 94 79.8
Sed0004334 Sechium edule HOM05D003961 ORTHO05D004528 1.4e-34 149.4 94 74.5
Duzib151G0309 Durio zibethinus HOM05D003961 ORTHO05D004528 1.9e-34 149.1 94 78.7
Oeu031235.1 Olea europaea HOM05D003961 ORTHO05D004528 2.4e-34 148.7 92 77.2
CANSAT78G1057 Cannabis sativa HOM05D003961 ORTHO05D004528 3.2e-34 148.3 94 77.7
Prupe.1G012800 Prunus persica HOM05D003961 ORTHO05D004528 3.2e-34 148.3 94 75.5
TAR365G0124 Trochodendron aralioides HOM05D003961 ORTHO05D004528 3.2e-34 148.3 94 76.6
Cfa015636 Carpinus fangiana HOM05D003961 ORTHO05D004528 5.4e-34 147.5 94 76.6
MELO3C006535.2 Cucumis melo HOM05D003961 ORTHO05D004528 7.1e-34 147.1 94 74.5
Manes.03G179600 Manihot esculenta HOM05D003961 ORTHO05D004528 1.2e-33 146.4 94 73.4
Nitab4.5_0000043g0220 Nicotiana tabacum HOM05D003961 ORTHO05D004528 1.2e-33 146.4 88 78.4
FAN17G1073 Fragaria x ananassa HOM05D003961 ORTHO05D004528 1.6e-33 146.0 92 76.1
CiPaw.01G165200 Carya illinoinensis HOM05D003961 ORTHO05D004528 2.7e-33 145.2 96 76.0
Haze_00908 Corylus avellana HOM05D003961 ORTHO05D004528 2.7e-33 145.2 94 75.5
FvH4_4g15420 Fragaria vesca HOM05D003961 ORTHO05D004528 2.7e-33 145.2 91 76.9
FAN07G0246 Fragaria x ananassa HOM05D003961 ORTHO05D004528 2.7e-33 145.2 91 76.9
FAN12G2300 Fragaria x ananassa HOM05D003961 ORTHO05D004528 2.7e-33 145.2 91 76.9
FAN22G1591 Fragaria x ananassa HOM05D003961 ORTHO05D004528 2.7e-33 145.2 91 76.9
MD13G1192100 Malus domestica HOM05D003961 ORTHO05D004528 3.5e-33 144.8 94 73.4
Sabra10G0054500 Salix brachista HOM05D003961 ORTHO05D004528 3.5e-33 144.8 94 76.6
PSO832G1325 Papaver somniferum HOM05D003961 ORTHO05D004528 4.6e-33 144.4 95 74.7
TPR.G5481 Trifolium pratense HOM05D003961 ORTHO05D004528 4.6e-33 144.4 94 72.3
Ca_10910_v3 Cicer arietinum L. HOM05D003961 ORTHO05D004528 6.0e-33 144.1 94 70.2
TWI73G0616 Tripterygium wilfordii HOM05D003961 ORTHO05D004528 7.8e-33 143.7 94 74.5
Eucgr.H03517 Eucalyptus grandis HOM05D003961 ORTHO05D004528 1.0e-32 143.3 94 72.3
MD16G1192700 Malus domestica HOM05D003961 ORTHO05D004528 1.0e-32 143.3 94 73.4
PGR004G2370 Punica granatum HOM05D003961 ORTHO05D004528 1.0e-32 143.3 94 75.5
Cpa.g.sc58.116 Carica papaya HOM05D003961 ORTHO05D004528 1.3e-32 142.9 94 74.5
CsaV3_3G013370 Cucumis sativus L. HOM05D003961 ORTHO05D004528 1.3e-32 142.9 94 72.3
Duzib212G0915 Durio zibethinus HOM05D003961 ORTHO05D004528 1.3e-32 142.9 90 78.9
Glyma.10G248600 Glycine max HOM05D003961 ORTHO05D004528 1.3e-32 142.9 94 76.6
Glyma.20G145500 Glycine max HOM05D003961 ORTHO05D004528 1.3e-32 142.9 94 76.6
RcHm_v2.0_Chr4g0416361 Rosa chinensis HOM05D003961 ORTHO05D004528 1.3e-32 142.9 91 75.8
Actinidia08494 Actinidia chinensis HOM05D003961 ORTHO05D004528 2.3e-32 142.1 94 72.3
Phvul.007G056700 Phaseolus vulgaris HOM05D003961 ORTHO05D004528 2.3e-32 142.1 94 77.7
MSTRG.4028 Avicennia marina HOM05D003961 ORTHO05D004528 3.0e-32 141.7 92 75.0
Psat6g208040 Pisum sativum HOM05D003961 ORTHO05D004528 3.9e-32 141.4 94 71.3
AUR62033612 Chenopodium quinoa HOM05D003961 ORTHO05D004528 5.1e-32 141.0 95 72.6
CSS0001637 Camellia sinensis var. sinensis HOM05D003961 ORTHO05D004528 6.6e-32 140.6 88 78.4
Lsat_1_v5_gn_5_148741 Lactuca sativa HOM05D003961 ORTHO05D004528 8.7e-32 140.2 94 72.3
PSO210G4025 Papaver somniferum HOM05D003961 ORTHO05D004528 8.7e-32 140.2 96 74.0
Lalb_Chr05g0210961 Lupinus albus HOM05D003961 ORTHO05D004528 1.1e-31 139.8 91 71.4
Peaxi162Scf00642g00006 Petunia axillaris HOM05D003961 ORTHO05D004528 1.1e-31 139.8 94 70.2
VMungo0720G2903 Vigna mungo HOM05D003961 ORTHO05D004528 1.5e-31 139.4 94 75.5
EL10Ac3g06424 Beta vulgaris HOM05D003961 ORTHO05D004528 3.3e-31 138.3 95 70.5
MBI04_g20819_MAGBIO Magnolia biondii HOM05D003961 ORTHO05D004528 3.3e-31 138.3 94 72.3
HanXRQChr04g0109101 Helianthus annuus HOM05D003961 ORTHO05D004528 5.6e-31 137.5 94 69.1
HanXRQChr10g0296391 Helianthus annuus HOM05D003961 ORTHO05D004528 5.6e-31 137.5 94 71.3
Medtr1g104540 Medicago truncatula HOM05D003961 ORTHO05D004528 5.6e-31 137.5 91 71.4
TAR633G2096 Trochodendron aralioides HOM05D003961 ORTHO05D004528 5.6e-31 137.5 94 71.3
arahy.Tifrunner.gnm1.ann1.K10YKQ Arachis hypogaea HOM05D003961 ORTHO05D004528 1.3e-30 136.3 94 70.2
Sed0007259 Sechium edule HOM05D003961 ORTHO05D004528 1.3e-30 136.3 92 67.4
arahy.Tifrunner.gnm1.ann1.X5EF0Z Arachis hypogaea HOM05D003961 ORTHO05D004528 1.6e-30 136.0 94 70.2
ECA234G0180 Erigeron canadensis HOM05D003961 ORTHO05D004528 2.1e-30 135.6 94 70.2
Atru.chr4.2476 Acer truncatum HOM05D003961 ORTHO05D004528 2.8e-30 135.2 83 79.5
Migut.G00334 Erythranthe guttata HOM05D003961 ORTHO05D004528 3.6e-30 134.8 92 72.8
Zm00001eb008830 Zea mays HOM05D003961 ORTHO05D004528 3.6e-30 134.8 92 68.5
SalBow2G1240 Salvia bowleyana HOM05D003961 ORTHO05D004528 4.8e-30 134.4 91 69.2
MSTRG.9986 Avicennia marina HOM05D003961 ORTHO05D004528 8.1e-30 133.7 94 67.0
SGA_v2.0_scaffold39G15244 Striga asiatica HOM05D003961 ORTHO05D004528 8.1e-30 133.7 88 72.7
THA.LOC104808538 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 8.1e-30 133.7 94 63.8
arahy.Tifrunner.gnm1.ann1.6SSG9H Arachis hypogaea HOM05D003961 ORTHO05D004528 1.1e-29 133.3 95 69.5
arahy.Tifrunner.gnm1.ann1.KTSS0P Arachis hypogaea HOM05D003961 ORTHO05D004528 1.1e-29 133.3 95 69.5
Os03g0219100 Oryza sativa ssp. japonica HOM05D003961 ORTHO05D004528 1.4e-29 132.9 91 68.1
SalBow2G2398 Salvia bowleyana HOM05D003961 ORTHO05D004528 1.8e-29 132.5 89 69.7
Nn4g26303 Nelumbo nucifera HOM05D003961 ORTHO05D004528 5.3e-29 131.0 95 66.3
Hund12136 Selenicereus undatus HOM05D003961 ORTHO05D004528 5.3e-29 131.0 96 67.7
Zm00001eb400000 Zea mays HOM05D003961 ORTHO05D004528 1.5e-28 129.4 89 68.5
Carub.0003s2257 Capsella rubella HOM05D003961 ORTHO05D004528 2.6e-28 128.6 94 62.8
CARHR098300 Cardamine hirsuta HOM05D003961 ORTHO05D004528 5.8e-28 127.5 94 61.7
THA.LOC104801547 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 9.9e-28 126.7 96 65.6
Sp1g04240 Schrenkiella parvula HOM05D003961 ORTHO05D004528 1.3e-27 126.3 96 65.6
CARHR004880 Cardamine hirsuta HOM05D003961 ORTHO05D004528 4.9e-27 124.4 96 65.6
Thhalv10007749m.g Eutrema salsugineum HOM05D003961 ORTHO05D004528 6.4e-27 124.0 96 64.6
AL3G36680 Arabidopsis lyrata HOM05D003961 ORTHO05D004528 8.4e-27 123.6 94 61.7
AT3G22410 Arabidopsis thaliana HOM05D003961 ORTHO05D004528 8.4e-27 123.6 94 61.7
Rhsim02G0023600 Rhododendron simsii HOM05D003961 ORTHO05D004528 8.4e-27 123.6 92 63.0
AL1G15190 Arabidopsis lyrata HOM05D003961 ORTHO05D004528 1.1e-26 123.2 96 64.6
AT1G05370 Arabidopsis thaliana HOM05D003961 ORTHO05D004528 1.1e-26 123.2 96 64.6
Carub.0001s0471 Capsella rubella HOM05D003961 ORTHO05D004528 2.4e-26 122.1 96 64.6
A05p26360 Brassica napus HOM05D003961 ORTHO05D004528 3.2e-26 121.7 96 60.4
BraA05t21511Z Brassica rapa HOM05D003961 ORTHO05D004528 3.2e-26 121.7 96 60.4
DCAR_002388 Daucus carota HOM05D003961 ORTHO05D004528 3.2e-26 121.7 95 64.2
Thhalv10020858m.g Eutrema salsugineum HOM05D003961 ORTHO05D004528 3.2e-26 121.7 95 62.1
BolC8t52703H Brassica oleracea HOM05D003961 ORTHO05D004528 4.2e-26 121.3 92 65.2
THA.LOC104826163 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 5.4e-26 120.9 97 63.9
Migut.N00179 Erythranthe guttata HOM05D003961 ORTHO05D004528 7.1e-26 120.6 91 67.0
BcaC05g28076 Brassica carinata HOM05D003961 ORTHO05D004528 9.3e-26 120.2 96 59.4
BcaC07g42133 Brassica carinata HOM05D003961 ORTHO05D004528 9.3e-26 120.2 92 64.1
A10p04070 Brassica napus HOM05D003961 ORTHO05D004528 9.3e-26 120.2 96 62.5
C05p40990 Brassica napus HOM05D003961 ORTHO05D004528 9.3e-26 120.2 96 59.4
C08p51740 Brassica napus HOM05D003961 ORTHO05D004528 9.3e-26 120.2 92 64.1
BolC5t32840H Brassica oleracea HOM05D003961 ORTHO05D004528 9.3e-26 120.2 96 59.4
BraA10t42678Z Brassica rapa HOM05D003961 ORTHO05D004528 9.3e-26 120.2 96 62.5
BolC5t29146H Brassica oleracea HOM05D003961 ORTHO05D004528 1.2e-25 119.8 96 62.5
Sc13g0004340 Simmondsia chinensis HOM05D003961 ORTHO05D004528 1.6e-25 119.4 87 66.7
C05p03710 Brassica napus HOM05D003961 ORTHO05D004528 2.1e-25 119.0 96 63.5
Aa31LG1G19250 Aethionema arabicum HOM05D003961 ORTHO05D004528 2.7e-25 118.6 96 63.5
A09p67460 Brassica napus HOM05D003961 ORTHO05D004528 2.7e-25 118.6 92 64.1
BraA09t42074Z Brassica rapa HOM05D003961 ORTHO05D004528 2.7e-25 118.6 92 64.1
BcaB06g26342 Brassica carinata HOM05D003961 ORTHO05D004528 6.0e-25 117.5 92 60.9
BcaB04g20519 Brassica carinata HOM05D003961 ORTHO05D004528 1.7e-24 115.9 95 58.9
Sp3g20170 Schrenkiella parvula HOM05D003961 ORTHO05D004528 1.7e-24 115.9 99 56.6
Aa31LG8G8940 Aethionema arabicum HOM05D003961 ORTHO05D004528 4.3e-23 111.3 96 57.3
HPP92_007926 Vanilla planifolia HOM05D003961 ORTHO05D004528 5.6e-23 110.9 90 58.9
A01p32690 Brassica napus HOM05D003961 ORTHO05D004528 7.3e-23 110.5 100 55.0
BraA01t03397Z Brassica rapa HOM05D003961 ORTHO05D004528 7.3e-23 110.5 100 55.0
BcaC09g49172 Brassica carinata HOM05D003961 ORTHO05D004528 2.1e-22 109.0 100 55.0
C01p41880 Brassica napus HOM05D003961 ORTHO05D004528 2.1e-22 109.0 100 55.0
BolC1t04141H Brassica oleracea HOM05D003961 ORTHO05D004528 2.1e-22 109.0 100 55.0
SHI00429 Sapria himalayana HOM05D003961 ORTHO05D004528 2.1e-22 109.0 95 58.9
SalBow3G0892 Salvia bowleyana HOM05D003961 ORTHO05D004528 3.6e-22 108.2 85 58.8
Nitab4.5_0004283g0010 Nicotiana tabacum HOM05D003961 ORTHO05D004528 1.1e-21 106.7 89 62.9
ATR0737G092 Amborella trichopoda HOM05D003961 ORTHO05D004528 3.1e-21 105.1 92 58.7
Sc19g0004200 Simmondsia chinensis HOM05D003961 ORTHO05D004528 6.9e-21 104.0 98 55.1
VMungo1215G0448 Vigna mungo HOM05D003961 ORTHO05D004528 9.9e-20 100.1 78 64.1
Phvul.002G046000 Phaseolus vulgaris HOM05D003961 ORTHO05D004528 8.4e-19 97.1 72 62.5
unitig_41.g31645 Utricularia gibba HOM05D003961 ORTHO05D004528 1.4e-18 96.3 85 58.8
CDE10G1225 Ceratophyllum demersum HOM05D003961 ORTHO05D004528 2.4e-18 95.5 91 53.8
unitig_748.g8337 Utricularia gibba HOM05D003961 ORTHO05D004528 2.4e-18 95.5 77 51.9
unitig_748.g8543 Utricularia gibba HOM05D003961 ORTHO05D004528 4.2e-18 94.7 92 51.1
CDE10G0336 Ceratophyllum demersum HOM05D003961 ORTHO05D004528 4.6e-17 91.3 91 52.7
Nitab4.5_0000321g0090 Nicotiana tabacum HOM05D003961 ORTHO05D004528 2.8e-14 82.0 96 52.1
Ah.13g073820 Amaranthus hybridus HOM05D003961 ORTHO05D004528 1.1e-13 80.1 95 48.4
ClCG05G005190 Citrullus lanatus HOM05D003961 ORTHO05D004528 2.0e-12 75.9 47 72.3
Rhsim04G0203000 Rhododendron simsii HOM05D003961 ORTHO05D004528 1.0e-11 73.6 45 80.0
Actinidia36962 Actinidia chinensis HOM05D003961 ORTHO05D004528 4.6e-09 64.7 41 70.7
TAR633G0076 Trochodendron aralioides HOM05D000441 ORTHO05D414409 3.9e-08 61.6 44 61.4


User provided reference genes

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