Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 4.6e-38 160.6 74 100.0
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 4.6e-38 160.6 74 100.0
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 4.6e-38 160.6 74 100.0
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 3.8e-32 141.0 74 82.4
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 6.4e-32 140.2 74 82.4
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 6.4e-32 140.2 74 83.8
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 1.1e-31 139.4 74 82.4
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 1.9e-31 138.7 74 81.1
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 2.4e-31 138.3 74 81.1
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 9.3e-31 136.3 74 79.7
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 9.3e-31 136.3 74 81.1
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 1.2e-30 136.0 74 78.4
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 1.6e-30 135.6 74 77.0
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 1.6e-30 135.6 74 81.1
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 2.1e-30 135.2 74 79.7
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 2.7e-30 134.8 74 79.7
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 2.7e-30 134.8 74 79.7
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 3.5e-30 134.4 74 78.4
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 3.5e-30 134.4 74 77.0
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 4.6e-30 134.0 74 77.0
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 4.6e-30 134.0 74 77.0
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 6.0e-30 133.7 74 78.4
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 7.8e-30 133.3 74 79.7
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 7.8e-30 133.3 74 81.1
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 7.8e-30 133.3 74 81.1
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 7.8e-30 133.3 74 81.1
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 7.8e-30 133.3 74 81.1
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 7.8e-30 133.3 74 77.0
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 7.8e-30 133.3 74 77.0
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 1.0e-29 132.9 74 78.4
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 1.0e-29 132.9 74 75.7
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 1.3e-29 132.5 74 79.7
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 1.3e-29 132.5 74 78.4
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 1.3e-29 132.5 74 75.7
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 1.7e-29 132.1 74 77.0
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 1.7e-29 132.1 74 78.4
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 1.7e-29 132.1 74 79.7
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 1.7e-29 132.1 74 75.7
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 2.3e-29 131.7 74 73.0
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 2.3e-29 131.7 74 75.7
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 2.3e-29 131.7 74 75.7
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 3.0e-29 131.3 74 77.0
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 3.0e-29 131.3 74 75.7
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 3.0e-29 131.3 74 75.7
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 3.0e-29 131.3 74 71.6
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 3.0e-29 131.3 74 74.3
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 3.0e-29 131.3 75 78.7
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 3.9e-29 131.0 74 78.4
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 3.9e-29 131.0 74 77.0
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 3.9e-29 131.0 74 74.3
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 3.9e-29 131.0 74 78.4
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 5.1e-29 130.6 74 75.7
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 6.6e-29 130.2 74 71.6
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 6.6e-29 130.2 74 73.0
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 6.6e-29 130.2 74 78.4
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 8.7e-29 129.8 74 78.4
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 8.7e-29 129.8 74 78.4
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 8.7e-29 129.8 74 73.0
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 1.1e-28 129.4 74 77.0
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 1.1e-28 129.4 74 77.0
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 1.5e-28 129.0 74 75.7
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 1.5e-28 129.0 74 71.6
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 1.5e-28 129.0 73 72.6
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 1.9e-28 128.6 74 74.3
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 1.9e-28 128.6 74 73.0
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 1.9e-28 128.6 74 78.4
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 4.3e-28 127.5 74 71.6
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 4.3e-28 127.5 74 70.3
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 7.3e-28 126.7 74 71.6
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 1.3e-27 125.9 74 77.0
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 1.6e-27 125.6 74 74.3
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 1.6e-27 125.6 74 78.4
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 8.1e-27 123.2 74 73.0
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 1.4e-26 122.5 74 68.9
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 1.8e-26 122.1 77 66.2
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 1.8e-26 122.1 77 67.5
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 1.8e-26 122.1 72 70.8
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 4.0e-26 120.9 74 68.9
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 4.0e-26 120.9 74 74.3
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 5.3e-26 120.6 74 71.6
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 5.3e-26 120.6 74 71.6
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 6.9e-26 120.2 74 71.6
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 6.9e-26 120.2 72 70.8
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 1.2e-25 119.4 74 70.3
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 1.2e-25 119.4 74 70.3
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 1.2e-25 119.4 74 74.3
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 1.2e-25 119.4 74 70.3
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 1.5e-25 119.0 74 70.3
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 2.0e-25 118.6 85 60.0
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 5.8e-25 117.1 76 65.8
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 7.6e-25 116.7 72 70.8
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 1.7e-24 115.5 88 56.8
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 3.2e-23 111.3 73 67.1
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 5.4e-23 110.5 69 71.0
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 5.4e-23 110.5 103 54.4
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 2.1e-22 108.6 112 48.2
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 1.0e-21 106.3 60 76.7
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 3.9e-21 104.4 95 55.8
AUR62020430 Chenopodium quinoa HOM05D006936 ORTHO05D008273 3.3e-20 101.3 56 78.6
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 6.2e-19 97.1 76 61.8
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 1.4e-18 95.9 71 64.8
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 8.4e-16 86.7 74 56.8
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 1.9e-15 85.5 74 55.4
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 3.2e-15 84.7 37 97.3
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 7.1e-15 83.6 63 55.6
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 1.6e-14 82.4 74 51.4
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 1.5e-12 75.9 70 50.0
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 1.9e-12 75.5 40 75.0
Ah.06g185860 Amaranthus hybridus HOM05D006936 ORTHO05D008273 7.9e-06 53.5 37 64.9


User provided reference genes

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