Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0732F.1_g210080 Hydrangea macrophylla HOM05D003596 ORTHO05D004256 9.5e-115 416.8 199 100.0
CiPaw.15G034900 Carya illinoinensis HOM05D003596 ORTHO05D004256 3.9e-84 315.1 156 92.3
CSS0012931 Camellia sinensis var. sinensis HOM05D003596 ORTHO05D004256 4.8e-82 308.1 156 90.4
Dinv12460 Davidia involucrata HOM05D003596 ORTHO05D004256 4.8e-82 308.1 156 90.4
RcHm_v2.0_Chr6g0311401 Rosa chinensis HOM05D003596 ORTHO05D004256 8.1e-82 307.4 155 91.0
CSS0037935 Camellia sinensis var. sinensis HOM05D003596 ORTHO05D004256 1.1e-81 307.0 156 89.7
FvH4_2g31420 Fragaria vesca HOM05D003596 ORTHO05D004256 1.1e-81 307.0 156 90.4
Lj8C494T3 Lonicera japonica HOM05D003596 ORTHO05D004256 1.8e-81 306.2 156 88.5
QL02p000417 Quercus lobata HOM05D003596 ORTHO05D004256 3.1e-81 305.4 156 88.5
vmacro17443 Vaccinium macrocarpon HOM05D003596 ORTHO05D004256 3.1e-81 305.4 156 89.1
vmacro22567 Vaccinium macrocarpon HOM05D003596 ORTHO05D004256 3.1e-81 305.4 156 89.1
FAN24G3537 Fragaria x ananassa HOM05D003596 ORTHO05D004256 4.0e-81 305.1 156 89.7
Eucgr.C00673 Eucalyptus grandis HOM05D003596 ORTHO05D004256 6.9e-81 304.3 156 88.5
Solyc08g062610.4 Solanum lycopersicum HOM05D003596 ORTHO05D004256 9.0e-81 303.9 156 89.7
CSS0026815 Camellia sinensis var. sinensis HOM05D003596 ORTHO05D004256 1.2e-80 303.5 156 89.1
CANSAT21G2424 Cannabis sativa HOM05D003596 ORTHO05D004256 1.5e-80 303.1 156 88.5
Migut.A00103 Erythranthe guttata HOM05D003596 ORTHO05D004256 1.5e-80 303.1 156 87.8
Prupe.1G407700 Prunus persica HOM05D003596 ORTHO05D004256 1.5e-80 303.1 156 88.5
SalBow4G3232 Salvia bowleyana HOM05D003596 ORTHO05D004256 1.5e-80 303.1 156 89.1
Rhsim05G0069300 Rhododendron simsii HOM05D003596 ORTHO05D004256 2.0e-80 302.8 156 88.5
Haze_18139 Corylus avellana HOM05D003596 ORTHO05D004256 3.4e-80 302.0 156 88.5
Manes.16G083300 Manihot esculenta HOM05D003596 ORTHO05D004256 3.4e-80 302.0 167 83.2
Sopen08g018080 Solanum pennellii HOM05D003596 ORTHO05D004256 4.5e-80 301.6 156 88.5
Sopen08g018130 Solanum pennellii HOM05D003596 ORTHO05D004256 4.5e-80 301.6 156 88.5
Duzib150G0181 Durio zibethinus HOM05D003596 ORTHO05D004256 5.8e-80 301.2 156 86.5
Thecc.09G058900 Theobroma cacao HOM05D003596 ORTHO05D004256 5.8e-80 301.2 156 87.2
Ca_15814_v3 Cicer arietinum L. HOM05D003596 ORTHO05D004256 7.6e-80 300.8 156 89.1
Ca_15848_v3 Cicer arietinum L. HOM05D003596 ORTHO05D004256 7.6e-80 300.8 156 89.1
FAN15G0358 Fragaria x ananassa HOM05D003596 ORTHO05D004256 7.6e-80 300.8 155 89.0
Lj1g0007600 Lotus japonicus HOM05D003596 ORTHO05D004256 7.6e-80 300.8 156 87.8
Actinidia29320 Actinidia chinensis HOM05D003596 ORTHO05D004256 1.3e-79 300.1 156 87.2
DCAR_003143 Daucus carota HOM05D003596 ORTHO05D004256 1.3e-79 300.1 156 86.5
PSO210G4954 Papaver somniferum HOM05D003596 ORTHO05D004256 1.7e-79 299.7 156 87.8
MD15G1054300 Malus domestica HOM05D003596 ORTHO05D004256 2.2e-79 299.3 156 87.2
Psat5g035520 Pisum sativum HOM05D003596 ORTHO05D004256 2.2e-79 299.3 156 87.2
CAN.G143.21 Capsicum annuum HOM05D003596 ORTHO05D004256 2.9e-79 298.9 156 87.2
Cfa017996 Carpinus fangiana HOM05D003596 ORTHO05D004256 2.9e-79 298.9 156 87.8
Gohir.A05G040200 Gossypium hirsutum HOM05D003596 ORTHO05D004256 2.9e-79 298.9 156 86.5
PGR031G3048 Punica granatum HOM05D003596 ORTHO05D004256 2.9e-79 298.9 156 85.9
Gohir.D05G041700 Gossypium hirsutum HOM05D003596 ORTHO05D004256 3.8e-79 298.5 156 86.5
Gorai.009G042400 Gossypium raimondii HOM05D003596 ORTHO05D004256 4.9e-79 298.1 156 86.5
Medtr3g104740 Medicago truncatula HOM05D003596 ORTHO05D004256 4.9e-79 298.1 156 86.5
Ciclev10008761m.g Citrus clementina HOM05D003596 ORTHO05D004256 8.4e-79 297.4 156 85.3
GSVIVG01035424001 Vitis vinifera HOM05D003596 ORTHO05D004256 8.4e-79 297.4 156 87.2
HanXRQChr03g0071431 Helianthus annuus HOM05D003596 ORTHO05D004256 1.1e-78 297.0 156 86.5
arahy.Tifrunner.gnm1.ann1.YCFU7L Arachis hypogaea HOM05D003596 ORTHO05D004256 1.4e-78 296.6 156 86.5
TPR.G3519 Trifolium pratense HOM05D003596 ORTHO05D004256 1.4e-78 296.6 156 85.9
PSO210G3757 Papaver somniferum HOM05D003596 ORTHO05D004256 2.5e-78 295.8 156 86.5
Sed0005044 Sechium edule HOM05D003596 ORTHO05D004256 3.2e-78 295.4 156 85.9
TAR626G0212 Trochodendron aralioides HOM05D003596 ORTHO05D004256 3.2e-78 295.4 156 85.9
Aqoxy7G03993 Aquilegia oxysepala HOM05D003596 ORTHO05D004256 5.5e-78 294.7 156 85.3
Lsat_1_v5_gn_7_60761 Lactuca sativa HOM05D003596 ORTHO05D004256 7.1e-78 294.3 156 85.3
Glyma.04G054100 Glycine max HOM05D003596 ORTHO05D004256 9.3e-78 293.9 156 85.9
Sc06g0001060 Simmondsia chinensis HOM05D003596 ORTHO05D004256 9.3e-78 293.9 156 84.6
TWI63G1485 Tripterygium wilfordii HOM05D003596 ORTHO05D004256 9.3e-78 293.9 156 84.0
Oeu018037.2 Olea europaea HOM05D003596 ORTHO05D004256 1.2e-77 293.5 156 83.3
MELO3C016892.2 Cucumis melo HOM05D003596 ORTHO05D004256 1.6e-77 293.1 156 84.6
SGA_v2.0_scaffold64G21855 Striga asiatica HOM05D003596 ORTHO05D004256 1.6e-77 293.1 156 84.6
Potri.018G060000 Populus trichocarpa HOM05D003596 ORTHO05D004256 2.7e-77 292.4 156 85.3
CsaV3_4G035870 Cucumis sativus L. HOM05D003596 ORTHO05D004256 6.0e-77 291.2 156 84.6
Nn8g38751 Nelumbo nucifera HOM05D003596 ORTHO05D004256 6.0e-77 291.2 156 85.3
Peaxi162Scf00070g00020 Petunia axillaris HOM05D003596 ORTHO05D004256 7.9e-77 290.8 152 86.8
Sabra18G0052600 Salix brachista HOM05D003596 ORTHO05D004256 7.9e-77 290.8 156 84.0
Phvul.009G079900 Phaseolus vulgaris HOM05D003596 ORTHO05D004256 1.0e-76 290.4 156 84.0
Hund03308 Selenicereus undatus HOM05D003596 ORTHO05D004256 2.3e-76 289.3 156 83.3
VMungo1309G0065 Vigna mungo HOM05D003596 ORTHO05D004256 2.3e-76 289.3 156 84.0
AUR62020561 Chenopodium quinoa HOM05D003596 ORTHO05D004256 3.0e-76 288.9 156 83.3
Lalb_Chr08g0244911 Lupinus albus HOM05D003596 ORTHO05D004256 3.0e-76 288.9 156 84.0
COL.COLO4_21105 Corchorus olitorius HOM05D003596 ORTHO05D004256 3.9e-76 288.5 156 82.1
ECA240G3089 Erigeron canadensis HOM05D003596 ORTHO05D004256 3.9e-76 288.5 148 87.8
arahy.Tifrunner.gnm1.ann1.N0QBSQ Arachis hypogaea HOM05D003596 ORTHO05D004256 5.1e-76 288.1 150 86.0
MSTRG.25976 Avicennia marina HOM05D003596 ORTHO05D004256 6.7e-76 287.7 156 83.3
AUR62009106 Chenopodium quinoa HOM05D003596 ORTHO05D004256 1.1e-75 287.0 155 82.6
AUR62020565 Chenopodium quinoa HOM05D003596 ORTHO05D004256 1.1e-75 287.0 156 82.7
ClCG05G018100 Citrullus lanatus HOM05D003596 ORTHO05D004256 1.5e-75 286.6 177 76.8
ATR0051G014 Amborella trichopoda HOM05D003596 ORTHO05D004256 1.9e-75 286.2 156 80.8
EL10Ac2g03812 Beta vulgaris HOM05D003596 ORTHO05D004256 5.7e-75 284.6 160 81.9
Cpa.g.sc91.83 Carica papaya HOM05D003596 ORTHO05D004256 7.4e-75 284.3 155 81.3
BcaC09g52112 Brassica carinata HOM05D003596 ORTHO05D004256 1.3e-74 283.5 156 82.1
PSO210G3791 Papaver somniferum HOM05D003596 ORTHO05D004256 1.3e-74 283.5 156 82.1
Ah.10g034070 Amaranthus hybridus HOM05D003596 ORTHO05D004256 3.7e-74 282.0 160 82.5
AL7G18450 Arabidopsis lyrata HOM05D003596 ORTHO05D004256 6.3e-74 281.2 156 82.7
MELO3C016893.2 Cucumis melo HOM05D003596 ORTHO05D004256 6.3e-74 281.2 156 80.1
CARHR241140 Cardamine hirsuta HOM05D003596 ORTHO05D004256 8.2e-74 280.8 156 81.4
Sp7g30860 Schrenkiella parvula HOM05D003596 ORTHO05D004256 1.8e-73 279.6 156 81.4
unitig_748.g7532 Utricularia gibba HOM05D003596 ORTHO05D004256 1.8e-73 279.6 202 67.8
A03p61780 Brassica napus HOM05D003596 ORTHO05D004256 2.4e-73 279.3 156 80.8
BraA03t15215Z Brassica rapa HOM05D003596 ORTHO05D004256 2.4e-73 279.3 156 80.8
Dinv12458 Davidia involucrata HOM05D003596 ORTHO05D004256 3.1e-73 278.9 140 90.0
C07p59490 Brassica napus HOM05D003596 ORTHO05D004256 4.1e-73 278.5 156 80.8
Carub.0007s0734 Capsella rubella HOM05D003596 ORTHO05D004256 5.3e-73 278.1 156 81.4
BolC7t46393H Brassica oleracea HOM05D003596 ORTHO05D004256 1.2e-72 276.9 156 80.1
Thhalv10025572m.g Eutrema salsugineum HOM05D003596 ORTHO05D004256 1.2e-72 276.9 164 77.4
BcaC09g52108 Brassica carinata HOM05D003596 ORTHO05D004256 2.0e-72 276.2 156 80.1
C01p05570 Brassica napus HOM05D003596 ORTHO05D004256 2.0e-72 276.2 156 80.1
BolC1t00537H Brassica oleracea HOM05D003596 ORTHO05D004256 2.0e-72 276.2 156 80.1
A01p05090 Brassica napus HOM05D003596 ORTHO05D004256 2.6e-72 275.8 156 79.5
BraA01t00492Z Brassica rapa HOM05D003596 ORTHO05D004256 2.6e-72 275.8 156 79.5
Glyma.06G054400 Glycine max HOM05D003596 ORTHO05D004256 3.4e-72 275.4 156 80.8
HPP92_023980 Vanilla planifolia HOM05D003596 ORTHO05D004256 3.4e-72 275.4 156 78.8
AT4G33110 Arabidopsis thaliana HOM05D003596 ORTHO05D004256 4.5e-72 275.0 156 80.1
HPP92_024003 Vanilla planifolia HOM05D003596 ORTHO05D004256 5.0e-71 271.6 156 77.6
QL02p000424 Quercus lobata HOM05D003596 ORTHO05D004256 8.5e-71 270.8 139 87.8
Aa31sc651G10 Aethionema arabicum HOM05D003596 ORTHO05D004256 1.1e-70 270.4 151 80.8
THA.LOC104803716 Tarenaya hassleriana HOM05D003596 ORTHO05D004256 1.9e-70 269.6 199 66.8
CiPaw.15G035400 Carya illinoinensis HOM05D003596 ORTHO05D004256 4.2e-70 268.5 179 73.2
BolC7t46392H Brassica oleracea HOM05D003596 ORTHO05D004256 5.5e-70 268.1 156 76.9
Atru.chr7.1921 Acer truncatum HOM05D003596 ORTHO05D004256 3.6e-69 265.4 139 84.2
THA.LOC104803717 Tarenaya hassleriana HOM05D003596 ORTHO05D004256 3.6e-69 265.4 156 76.3
AT4G33120 Arabidopsis thaliana HOM05D003596 ORTHO05D004256 4.6e-69 265.0 156 75.6
Zm00001eb385240 Zea mays HOM05D003596 ORTHO05D004256 7.9e-69 264.2 167 71.3
Nitab4.5_0002797g0010 Nicotiana tabacum HOM05D003596 ORTHO05D004256 1.5e-67 260.0 132 89.4
Lj8A493G26 Lonicera japonica HOM05D003596 ORTHO05D004256 4.2e-62 241.9 165 72.7
CiPaw.15G035100 Carya illinoinensis HOM05D003596 ORTHO05D004256 6.7e-60 234.6 156 73.1
AagrBONN_evm.TU.Sc2ySwM_117.2988 Anthoceros agrestis HOM05D003596 ORTHO05D004256 9.7e-59 230.7 156 66.0
Psat5g035440 Pisum sativum HOM05D003596 ORTHO05D004256 9.7e-59 230.7 134 79.1
Psat5g131440 Pisum sativum HOM05D003596 ORTHO05D004256 9.7e-59 230.7 134 79.1
HanXRQChr11g0345821 Helianthus annuus HOM05D003596 ORTHO05D004256 3.7e-58 228.8 179 59.2
Sopen08g018090 Solanum pennellii HOM05D003596 ORTHO05D004256 1.5e-56 223.4 112 91.1
MBI12_g10638_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 2.0e-56 223.0 118 83.9
Pp3c17_22760 Physcomitrium patens HOM05D003596 ORTHO05D004256 4.5e-56 221.9 156 63.5
Nitab4.5_0006016g0010 Nicotiana tabacum HOM05D003596 ORTHO05D004256 6.5e-55 218.0 112 88.4
CBR_g6365 Chara braunii HOM05D003596 ORTHO05D004256 2.5e-54 216.1 173 56.1
Mapoly0103s0018 Marchantia polymorpha HOM05D003596 ORTHO05D004256 2.5e-54 216.1 156 63.5
SMO271G0076 Selaginella moellendorffii HOM05D003596 ORTHO05D004256 4.2e-54 215.3 156 60.3
Lj1g0006265 Lotus japonicus HOM05D003596 ORTHO05D004256 1.8e-52 209.9 112 83.0
MBI05_g40673_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 3.9e-52 208.8 159 61.0
ClCG05G018110 Citrullus lanatus HOM05D003596 ORTHO05D004256 1.7e-50 203.4 159 62.9
BcaNung02153 Brassica carinata HOM05D003596 ORTHO05D004256 3.1e-49 199.1 109 80.7
PSO063G3496 Papaver somniferum HOM05D003596 ORTHO05D004256 6.5e-47 191.4 159 57.2
Aqoxy7G04015 Aquilegia oxysepala HOM05D003596 ORTHO05D004256 1.1e-46 190.7 174 54.0
SEGI_31297 Sequoiadendron giganteum HOM05D003596 ORTHO05D004256 1.9e-46 189.9 156 58.3
MBI05_g40674_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 9.4e-46 187.6 159 57.2
Cre09.g398700 Chlamydomonas reinhardtii HOM05D003596 ORTHO05D004256 6.1e-45 184.9 158 52.5
MCO13G046 Micromonas commoda HOM05D003596 ORTHO05D004256 5.2e-44 181.8 162 50.6
MBI07_g28657_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 2.0e-43 179.9 159 53.5
PSO386G0091 Papaver somniferum HOM05D003596 ORTHO05D004256 7.5e-43 177.9 160 53.1
Gohir.A05G040250 Gossypium hirsutum HOM05D003596 ORTHO05D004256 2.2e-42 176.4 93 86.0
Gorai.009G042500 Gossypium raimondii HOM05D003596 ORTHO05D004256 2.8e-42 176.0 93 86.0
MBI05_g21322_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 4.8e-42 175.3 159 54.1
PSO832G4098 Papaver somniferum HOM05D003596 ORTHO05D004256 7.0e-41 171.4 191 47.1
Zm00001eb045600 Zea mays HOM05D003596 ORTHO05D004256 5.9e-40 168.3 104 72.1
MBI05_g38197_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 2.2e-39 166.4 152 52.6
Zm00001eb382840 Zea mays HOM05D003596 ORTHO05D004256 2.9e-39 166.0 104 71.2
Zm00001eb224980 Zea mays HOM05D003596 ORTHO05D004256 1.9e-38 163.3 104 70.2
MBI11_g17711_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 2.1e-37 159.8 197 43.1
PSO063G0821 Papaver somniferum HOM05D003596 ORTHO05D004256 3.6e-37 159.1 160 49.4
PSO339G1340 Papaver somniferum HOM05D003596 ORTHO05D004256 6.1e-37 158.3 167 49.1
Cc08_g11040 Coffea canephora HOM05D003596 ORTHO05D004256 8.0e-37 157.9 88 80.7
Aqoxy7G01445 Aquilegia oxysepala HOM05D003596 ORTHO05D004256 2.3e-36 156.4 192 45.8
PSO675G3982 Papaver somniferum HOM05D003596 ORTHO05D004256 1.2e-35 154.1 160 48.8
PSO675G8489 Papaver somniferum HOM05D003596 ORTHO05D004256 1.2e-35 154.1 160 48.8
SMO115G0275 Selaginella moellendorffii HOM05D003596 ORTHO05D004256 3.4e-35 152.5 154 42.2
PSO229G0119 Papaver somniferum HOM05D003596 ORTHO05D004256 9.8e-35 151.0 160 48.1
PSO832G4001 Papaver somniferum HOM05D003596 ORTHO05D004256 1.3e-34 150.6 160 50.0
Cfa024591 Carpinus fangiana HOM05D000084 ORTHO05D004256 2.2e-34 149.8 150 46.7
PSO386G0153 Papaver somniferum HOM05D003596 ORTHO05D004256 3.7e-34 149.1 148 48.0
PSO063G4959 Papaver somniferum HOM05D003596 ORTHO05D004256 4.8e-34 148.7 160 48.8
Sopen08g018100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-33 147.1 83 80.7
CDE02G3165 Ceratophyllum demersum HOM05D003596 ORTHO05D004256 2.4e-33 146.4 82 78.0
AL7G39850 Arabidopsis lyrata HOM05D003596 ORTHO05D004256 3.1e-33 146.0 87 77.0
AL6G32760 Arabidopsis lyrata HOM05D003596 ORTHO05D004256 7.0e-33 144.8 87 75.9
CDE02G2104 Ceratophyllum demersum HOM05D003596 ORTHO05D004256 2.7e-32 142.9 85 75.3
PSO384G1072 Papaver somniferum HOM05D003596 ORTHO05D004256 7.7e-32 141.4 160 45.6
PSO384G1609 Papaver somniferum HOM05D003596 ORTHO05D004256 7.7e-32 141.4 160 45.6
Os06g0574100 Oryza sativa ssp. japonica HOM05D003596 ORTHO05D004256 5.0e-31 138.7 82 73.2
Aa31LG7G10170 Aethionema arabicum HOM05D003596 ORTHO05D004256 4.2e-30 135.6 94 70.2
SMO358G0603 Selaginella moellendorffii HOM05D003596 ORTHO05D004256 5.9e-24 115.2 157 37.6
PSO832G1397 Papaver somniferum HOM05D003596 ORTHO05D004256 1.7e-23 113.6 114 47.4
Aqoxy7G02483 Aquilegia oxysepala HOM05D003596 ORTHO05D031267 5.0e-23 112.1 96 52.1
SMO111G0057 Selaginella moellendorffii HOM05D003596 ORTHO05D004256 6.6e-23 111.7 163 35.6
Aa31LG7G10160 Aethionema arabicum HOM05D003596 ORTHO05D004256 4.0e-20 102.4 70 67.1
COL.COLO4_06847 Corchorus olitorius HOM05D003596 ORTHO05D004256 8.9e-20 101.3 49 87.8
Ca_15847_v3 Cicer arietinum L. HOM05D003596 ORTHO05D004256 3.5e-16 89.4 46 84.8
Sopen08g018050 Solanum pennellii HOM05D000004 ORTHO05D000695 1.1e-12 77.8 49 71.4
Aqoxy4G01737 Aquilegia oxysepala HOM05D003596 ORTHO05D031267 2.6e-11 73.2 61 49.2
MBI05_g18185_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 7.0e-09 65.1 57 47.4
Aqoxy7G04012 Aquilegia oxysepala HOM05D003596 ORTHO05D004256 2.0e-08 63.5 64 51.6
MBI05_g33750_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 1.7e-07 60.5 78 43.6
MBI04_g31166_MAGBIO Magnolia biondii HOM05D007189 ORTHO05D241639 4.3e-06 55.8 61 44.3


User provided reference genes

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