Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0727F.1_g209110 Hydrangea macrophylla HOM05D001279 ORTHO05D009618 2.3e-63 245.4 118 100.0
CSS0006181 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D009618 1.5e-19 99.8 65 75.4
CSS0048007 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D009618 1.5e-19 99.8 65 75.4
Rhsim06G0041200 Rhododendron simsii HOM05D001279 ORTHO05D009618 1.5e-19 99.8 65 72.3
TAR381G1355 Trochodendron aralioides HOM05D001279 ORTHO05D009618 2.2e-18 95.9 65 67.7
vmacro21579 Vaccinium macrocarpon HOM05D001279 ORTHO05D009618 8.4e-18 94.0 65 70.8
Dinv39351 Davidia involucrata HOM05D001279 ORTHO05D009618 1.9e-17 92.8 65 75.4
MBI16_g08581_MAGBIO Magnolia biondii HOM05D001279 ORTHO05D009618 3.2e-17 92.0 65 64.6
Actinidia22594 Actinidia chinensis HOM05D001279 ORTHO05D009618 5.4e-17 91.3 65 70.8
Potri.014G036300 Populus trichocarpa HOM05D001279 ORTHO05D009618 5.4e-17 91.3 61 63.9
Aqoxy6G00907 Aquilegia oxysepala HOM05D001279 ORTHO05D009618 7.1e-17 90.9 61 70.5
Sabra14G0026100 Salix brachista HOM05D001279 ORTHO05D009618 7.1e-17 90.9 61 63.9
Duzib116G0433 Durio zibethinus HOM05D001279 ORTHO05D009618 2.1e-16 89.4 61 63.9
Gohir.D01G106400 Gossypium hirsutum HOM05D001279 ORTHO05D009618 3.5e-16 88.6 65 58.5
Gorai.002G130600 Gossypium raimondii HOM05D001279 ORTHO05D009618 3.5e-16 88.6 65 58.5
Dinv36006 Davidia involucrata HOM05D001279 ORTHO05D009618 6.0e-16 87.8 65 69.2
Cfa018492 Carpinus fangiana HOM05D001279 ORTHO05D009618 1.0e-15 87.0 61 63.9
COL.COLO4_26434 Corchorus olitorius HOM05D001279 ORTHO05D009618 1.0e-15 87.0 61 60.7
Gohir.A01G118100 Gossypium hirsutum HOM05D001279 ORTHO05D009618 1.0e-15 87.0 65 56.9
Haze_17583 Corylus avellana HOM05D001279 ORTHO05D009618 1.3e-15 86.7 61 63.9
Duzib093G1800 Durio zibethinus HOM05D001279 ORTHO05D009618 1.3e-15 86.7 61 59.0
Medtr1g021180 Medicago truncatula HOM05D001279 ORTHO05D009618 3.0e-15 85.5 66 63.6
Thecc.08G015700 Theobroma cacao HOM05D001279 ORTHO05D009618 3.0e-15 85.5 61 60.7
Nn5g29377 Nelumbo nucifera HOM05D001279 ORTHO05D009618 3.9e-15 85.1 65 60.0
HanXRQChr16g0508101 Helianthus annuus HOM05D001279 ORTHO05D009618 5.1e-15 84.7 61 63.9
QL02p006279 Quercus lobata HOM05D001279 ORTHO05D009618 5.1e-15 84.7 61 63.9
PGSC0003DMG402011681 Solanum tuberosum HOM05D001279 ORTHO05D009618 5.1e-15 84.7 61 67.2
arahy.Tifrunner.gnm1.ann1.5J9JWM Arachis hypogaea HOM05D001279 ORTHO05D009618 6.7e-15 84.3 65 56.9
arahy.Tifrunner.gnm1.ann1.87Y2S4 Arachis hypogaea HOM05D001279 ORTHO05D009618 6.7e-15 84.3 65 56.9
ECA232G0918 Erigeron canadensis HOM05D001279 ORTHO05D009618 6.7e-15 84.3 61 67.2
Lj4A49G69 Lonicera japonica HOM05D001279 ORTHO05D009618 8.7e-15 84.0 61 67.2
PSO675G6998 Papaver somniferum HOM05D001279 ORTHO05D009618 8.7e-15 84.0 61 59.0
Peaxi162Scf01514g00030 Petunia axillaris HOM05D001279 ORTHO05D009618 8.7e-15 84.0 61 65.6
PSO541G2686 Papaver somniferum HOM05D001279 ORTHO05D009618 3.3e-14 82.0 61 57.4
CiPaw.16G050900 Carya illinoinensis HOM05D001279 ORTHO05D009618 4.3e-14 81.6 61 59.0
Solyc04g079540.3 Solanum lycopersicum HOM05D001279 ORTHO05D009618 5.6e-14 81.3 61 63.9
Sopen04g033120 Solanum pennellii HOM05D001279 ORTHO05D009618 5.6e-14 81.3 61 63.9
Lj5g0026644 Lotus japonicus HOM05D001279 ORTHO05D009618 7.4e-14 80.9 65 58.5
Psat6g011440 Pisum sativum HOM05D001279 ORTHO05D009618 7.4e-14 80.9 65 60.0
TWI56G1268 Tripterygium wilfordii HOM05D001279 ORTHO05D009618 7.4e-14 80.9 61 62.3
Migut.N02687 Erythranthe guttata HOM05D001279 ORTHO05D009618 9.6e-14 80.5 61 63.9
SalBow8G1709 Salvia bowleyana HOM05D001279 ORTHO05D009618 9.6e-14 80.5 61 65.6
MELO3C016722.2 Cucumis melo HOM05D001279 ORTHO05D009618 1.6e-13 79.7 65 56.9
SGA_v2.0_scaffold558G52916 Striga asiatica HOM05D001279 ORTHO05D009618 1.6e-13 79.7 61 62.3
TPR.G13681 Trifolium pratense HOM05D001279 ORTHO05D009618 1.6e-13 79.7 65 60.0
Manes.05G169300 Manihot esculenta HOM05D001279 ORTHO05D009618 2.1e-13 79.3 61 59.0
Nitab4.5_0000068g0160 Nicotiana tabacum HOM05D001279 ORTHO05D009618 2.1e-13 79.3 61 62.3
Thhalv10011550m.g Eutrema salsugineum HOM05D001279 ORTHO05D009618 2.8e-13 79.0 67 53.7
Glyma.14G079333 Glycine max HOM05D001279 ORTHO05D009618 2.8e-13 79.0 58 60.3
AL1G54070 Arabidopsis lyrata HOM05D001279 ORTHO05D009618 3.7e-13 78.6 67 53.7
CsaV3_4G033960 Cucumis sativus L. HOM05D001279 ORTHO05D009618 4.8e-13 78.2 65 55.4
Nitab4.5_0008935g0010 Nicotiana tabacum HOM05D001279 ORTHO05D009618 4.8e-13 78.2 61 60.7
Ca_13316_v3 Cicer arietinum L. HOM05D001279 ORTHO05D009618 6.2e-13 77.8 65 56.9
Lalb_Chr22g0355261 Lupinus albus HOM05D001279 ORTHO05D009618 6.2e-13 77.8 65 52.3
BcaC08g42968 Brassica carinata HOM05D001279 ORTHO05D009618 8.1e-13 77.4 67 53.7
C06p02080 Brassica napus HOM05D001279 ORTHO05D009618 8.1e-13 77.4 67 53.7
Sed0016077 Sechium edule HOM05D001279 ORTHO05D009618 8.1e-13 77.4 61 55.7
CARHR037310 Cardamine hirsuta HOM05D001279 ORTHO05D009618 1.1e-12 77.0 67 50.7
Sp1g34690 Schrenkiella parvula HOM05D001279 ORTHO05D009618 1.1e-12 77.0 67 53.7
A10p06240 Brassica napus HOM05D001279 ORTHO05D009618 1.4e-12 76.6 67 53.7
ClCG05G019520 Citrullus lanatus HOM05D001279 ORTHO05D009618 1.4e-12 76.6 65 55.4
Aa31sc380G30 Aethionema arabicum HOM05D001279 ORTHO05D009618 1.8e-12 76.3 67 50.7
Glyma.17G245800 Glycine max HOM05D001279 ORTHO05D009618 1.8e-12 76.3 65 53.8
Lsat_1_v5_gn_4_123141 Lactuca sativa HOM05D001279 ORTHO05D009618 1.8e-12 76.3 61 55.7
BraA10t42892Z Brassica rapa HOM05D001279 ORTHO05D009618 2.4e-12 75.9 67 53.7
Cpa.g.sc357.10 Carica papaya HOM05D001279 ORTHO05D009618 2.4e-12 75.9 65 56.9
AT1G47310 Arabidopsis thaliana HOM05D001279 ORTHO05D009618 3.1e-12 75.5 67 52.2
Carub.0001s3646 Capsella rubella HOM05D001279 ORTHO05D009618 4.0e-12 75.1 67 52.2
DCAR_012762 Daucus carota HOM05D001279 ORTHO05D001636 4.0e-12 75.1 61 55.7
VMungo0647G1436 Vigna mungo HOM05D001279 ORTHO05D009618 4.0e-12 75.1 65 53.8
Actinidia15275 Actinidia chinensis HOM05D001279 ORTHO05D009618 5.3e-12 74.7 72 56.9
Phvul.001G018600 Phaseolus vulgaris HOM05D001279 ORTHO05D009618 5.3e-12 74.7 65 53.8
THA.LOC104815190 Tarenaya hassleriana HOM05D001279 ORTHO05D009618 5.3e-12 74.7 67 53.7
BcaB07g33819 Brassica carinata HOM05D001279 ORTHO05D009618 6.9e-12 74.3 67 52.2
BolC6t35339H Brassica oleracea HOM05D001279 ORTHO05D009618 1.5e-11 73.2 67 52.2
PGR031G1589 Punica granatum HOM05D001279 ORTHO05D009618 1.5e-11 73.2 61 55.7
Prupe.1G389000 Prunus persica HOM05D001279 ORTHO05D009618 2.6e-11 72.4 65 55.4
Manes.18G035401 Manihot esculenta HOM05D001279 ORTHO05D009618 5.8e-11 71.2 61 52.5
Eucgr.F02384 Eucalyptus grandis HOM05D001279 ORTHO05D009618 7.6e-11 70.9 65 47.7
FAN15G1316 Fragaria x ananassa HOM05D001279 ORTHO05D009618 1.3e-10 70.1 67 49.3
FAN20G0232 Fragaria x ananassa HOM05D001279 ORTHO05D001636 1.3e-10 70.1 67 49.3
FAN20G1724 Fragaria x ananassa HOM05D001279 ORTHO05D001636 1.3e-10 70.1 67 49.3
FvH4_2g40681 Fragaria vesca HOM05D001279 ORTHO05D009618 2.9e-10 68.9 67 47.8
MD15G1034900 Malus domestica HOM05D001279 ORTHO05D009618 4.9e-10 68.2 87 44.8
ATR0716G073 Amborella trichopoda HOM05D001279 ORTHO05D009618 1.1e-09 67.0 62 53.2
FAN27G0688 Fragaria x ananassa HOM05D001279 ORTHO05D001636 1.1e-09 67.0 67 47.8
HPP92_018728 Vanilla planifolia HOM05D001279 ORTHO05D009618 1.1e-09 67.0 63 52.4
CANSAT25G1505 Cannabis sativa HOM05D001279 ORTHO05D009618 2.4e-09 65.9 61 52.5
CDE07G1628 Ceratophyllum demersum HOM05D001279 ORTHO05D009618 2.4e-09 65.9 64 46.9
MD08G1040400 Malus domestica HOM05D001279 ORTHO05D009618 3.2e-09 65.5 65 50.8
unitig_22.g6775 Utricularia gibba HOM05D001279 ORTHO05D009618 4.2e-09 65.1 61 52.5
RcHm_v2.0_Chr6g0299921 Rosa chinensis HOM05D001279 ORTHO05D009618 2.1e-08 62.8 63 49.2
Os03g0765100 Oryza sativa ssp. japonica HOM05D001279 ORTHO05D009618 2.3e-07 59.3 67 43.3
Zm00001eb214130 Zea mays HOM05D001279 ORTHO05D009618 1.5e-06 56.6 67 41.8
ATR0767G021 Amborella trichopoda HOM05D005406 ORTHO05D006599 3.3e-06 55.5 67 38.8
Medtr1g021220 Medicago truncatula HOM05D001279 ORTHO05D009618 9.6e-06 53.9 41 61.0


User provided reference genes

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