Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 3.5e-194 681.4 339 100.0
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 2.5e-139 499.2 298 83.6
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 8.9e-137 490.7 328 75.9
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.7e-135 486.5 301 82.1
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 7.0e-134 481.1 311 77.8
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 6.6e-132 474.6 301 79.1
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 5.6e-131 471.5 294 79.6
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 9.5e-131 470.7 300 76.3
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 3.6e-130 468.8 298 76.5
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 3.6e-130 468.8 301 75.7
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 6.1e-130 468.0 291 79.0
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 1.0e-129 467.2 301 76.7
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 1.4e-129 466.8 291 79.7
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 2.3e-129 466.1 299 77.9
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 8.9e-129 464.2 301 74.8
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 4.4e-128 461.8 301 75.7
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 5.8e-128 461.5 298 77.5
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 7.5e-128 461.1 300 74.3
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 9.8e-128 460.7 292 78.4
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 2.2e-127 459.5 298 77.2
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 3.7e-127 458.8 300 74.0
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.9e-126 456.4 298 76.8
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 3.2e-126 455.7 301 75.1
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 2.7e-125 452.6 356 66.3
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 3.5e-125 452.2 311 71.4
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 3.5e-125 452.2 301 76.7
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 6.0e-125 451.4 314 74.2
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 7.8e-125 451.1 259 86.5
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.0e-124 450.7 298 75.5
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-124 450.7 294 74.1
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.0e-124 450.7 294 74.1
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 3.0e-124 449.1 295 75.6
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 3.9e-124 448.7 295 75.9
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 6.6e-124 448.0 301 74.1
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.6e-124 447.6 294 73.8
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 1.1e-123 447.2 295 75.3
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.1e-123 447.2 303 73.9
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.9e-123 446.4 301 72.4
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 5.6e-123 444.9 302 73.5
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 1.6e-122 443.4 298 74.8
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 4.7e-122 441.8 279 78.9
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 6.2e-122 441.4 298 73.8
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 1.4e-121 440.3 303 73.3
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 2.3e-121 439.5 300 73.3
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 5.2e-121 438.3 302 72.8
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 5.2e-121 438.3 299 71.6
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 6.8e-121 438.0 298 73.5
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.2e-120 437.2 293 75.1
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 1.5e-120 436.8 301 71.1
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.5e-120 436.8 299 75.6
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.0e-120 436.4 299 72.2
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.6e-120 436.0 301 73.1
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 3.4e-120 435.6 294 72.4
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 5.8e-120 434.9 294 74.8
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 5.8e-120 434.9 297 73.7
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.5e-120 434.5 301 72.4
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 7.5e-120 434.5 298 73.8
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 9.8e-120 434.1 290 73.4
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 1.3e-119 433.7 294 72.1
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.9e-119 431.8 298 72.8
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 6.4e-119 431.4 301 72.1
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 8.3e-119 431.0 290 74.1
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.1e-118 430.6 294 71.8
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.4e-118 430.3 298 72.1
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.4e-118 429.5 298 72.1
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 2.4e-118 429.5 298 72.1
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 3.2e-118 429.1 282 77.3
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 4.1e-118 428.7 291 74.6
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.4e-118 428.3 284 76.1
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 7.0e-118 427.9 301 70.8
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 9.2e-118 427.6 299 70.2
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-117 427.2 298 71.8
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.6e-117 426.8 303 70.6
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 2.1e-117 426.4 294 71.1
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.7e-117 426.0 293 72.4
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.7e-117 426.0 293 72.4
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 6.0e-117 424.9 319 69.9
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 6.0e-117 424.9 282 77.0
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 7.8e-117 424.5 301 70.4
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 1.0e-116 424.1 301 70.1
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 5.0e-116 421.8 298 68.8
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 6.6e-116 421.4 301 69.8
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 8.6e-116 421.0 294 70.4
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 8.6e-116 421.0 293 69.3
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.1e-115 420.6 295 70.5
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.5e-115 420.2 294 70.1
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 3.3e-115 419.1 290 69.7
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 7.3e-115 417.9 294 70.1
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 9.5e-115 417.5 295 69.8
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.6e-114 416.8 295 69.8
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 2.8e-114 416.0 283 73.5
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 3.6e-114 415.6 283 73.5
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.5e-112 410.2 282 74.5
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 4.4e-112 408.7 283 71.4
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 5.8e-112 408.3 301 67.8
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.4e-110 403.7 286 71.0
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 6.0e-109 398.3 295 66.4
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 1.1e-107 394.0 300 66.7
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 3.3e-107 392.5 277 71.5
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 3.3e-107 392.5 277 71.5
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.1e-105 387.5 258 73.6
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.1e-105 387.5 257 76.3
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 4.0e-105 385.6 264 73.1
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 8.4e-103 377.9 301 64.8
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 1.9e-99 366.7 290 61.4
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.0e-96 356.7 309 62.5
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.4e-95 351.7 261 69.0
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 3.2e-94 349.4 301 58.8
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 7.1e-94 348.2 226 76.1
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.3e-92 343.2 298 62.4
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 8.1e-90 334.7 221 78.3
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.1e-89 334.3 263 66.5
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.7e-82 309.3 221 73.8
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 1.4e-78 297.4 296 51.4
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 3.0e-76 289.7 300 55.3
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 2.8e-74 283.1 278 50.7
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 7.6e-72 275.0 304 52.6
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.9e-70 270.4 283 49.8
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.1e-69 266.9 226 58.4
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 7.9e-69 265.0 248 52.8
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 5.1e-68 262.3 300 49.3
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.1e-67 261.2 272 47.1
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 2.4e-65 253.4 294 50.0
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 3.7e-42 176.4 264 36.7
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 8.5e-39 165.2 140 62.1
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.3e-34 151.4 89 79.8
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 2.4e-33 147.1 284 30.6
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 5.0e-31 139.4 101 69.3
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 5.5e-30 136.0 116 62.9
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-28 131.3 80 73.8
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.0e-28 130.2 85 70.6
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.0e-28 129.8 123 53.7
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.5e-27 127.9 86 69.8
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 9.8e-27 125.2 84 69.0
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-26 124.8 80 72.5
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.8e-25 120.9 75 76.0
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.0e-23 115.2 88 72.7
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 1.6e-21 107.8 274 31.0
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.1e-21 107.5 72 69.4
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-20 105.1 71 69.0
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-20 104.4 72 68.1
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.0e-20 103.6 71 67.6
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.0e-20 103.2 71 67.6
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.0e-20 103.2 70 68.6
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 5.2e-20 102.8 104 57.7
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 6.8e-20 102.4 110 53.6
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-19 101.7 70 65.7
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-19 101.3 72 65.3
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 1.5e-19 101.3 110 53.6
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.4e-19 99.8 71 66.2
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 7.5e-19 99.0 82 63.4
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.7e-18 97.8 226 30.5
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.3e-18 95.5 97 52.6
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-17 95.1 72 61.1
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 4.1e-17 93.2 72 63.9
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 5.6e-14 82.8 45 84.4
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 5.6e-14 82.8 60 70.0
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.8e-13 80.5 49 71.4
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 6.1e-13 79.3 67 68.7
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.0e-13 79.0 49 75.5
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 4.1e-09 66.6 52 63.5
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 1.7e-07 61.2 43 72.1
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-06 58.2 40 75.0
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 1.9e-06 57.8 42 69.0
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 2.5e-06 57.4 43 65.1
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 5.6e-06 56.2 52 59.6
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 5.6e-06 56.2 42 64.3
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.6e-06 56.2 38 71.1


User provided reference genes

Program Settings