Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 0.0e+00 1449.9 718 100.0
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 0.0e+00 1168.7 718 79.8
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 3.3e-298 1028.1 723 70.8
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 7.3e-290 1000.3 710 69.6
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 3.2e-269 931.8 712 65.2
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.1e-265 919.1 670 68.5
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 2.1e-265 919.1 722 63.7
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 5.6e-258 894.4 718 62.8
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 3.8e-254 881.7 670 66.4
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.9e-253 879.4 737 62.1
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 9.3e-253 877.1 716 62.6
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 5.1e-251 871.3 722 61.5
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 5.5e-245 851.3 713 60.0
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 9.3e-245 850.5 722 57.9
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 1.3e-243 846.7 720 60.6
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 1.3e-243 846.7 718 60.6
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 1.8e-243 846.3 721 58.9
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 3.9e-243 845.1 719 57.2
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 4.3e-242 841.6 718 59.2
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 1.3e-241 840.1 713 57.5
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 1.6e-241 839.7 718 57.1
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 2.4e-240 835.9 708 59.3
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 9.0e-240 833.9 684 60.7
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 9.0e-240 833.9 715 60.4
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 7.6e-239 830.9 718 60.0
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 7.6e-239 830.9 709 58.7
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 1.0e-238 830.5 736 60.3
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 1.3e-238 830.1 711 58.4
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 2.9e-238 828.9 686 61.8
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 2.5e-237 825.9 722 59.6
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 5.1e-235 818.1 714 58.5
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 1.6e-233 813.1 712 58.8
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 6.3e-233 811.2 722 58.3
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.4e-232 810.1 715 59.6
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.5e-231 806.6 723 59.1
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.5e-231 806.6 721 55.8
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 4.5e-231 805.1 713 59.3
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 5.0e-230 801.6 713 59.3
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 7.2e-229 797.7 712 57.0
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 1.6e-228 796.6 672 61.9
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 2.7e-228 795.8 735 57.8
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 4.6e-228 795.0 704 55.7
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 4.6e-228 795.0 734 55.9
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 6.1e-228 794.7 680 59.0
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 5.1e-227 791.6 709 56.7
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 2.6e-226 789.3 715 58.0
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 2.8e-225 785.8 651 62.8
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 3.1e-224 782.3 710 57.6
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 5.9e-223 778.1 710 57.9
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 5.2e-219 765.0 757 53.9
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 6.7e-219 764.6 720 56.0
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 9.7e-218 760.8 682 56.2
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 1.3e-217 760.4 763 52.2
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 2.2e-214 749.6 713 55.1
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 7.2e-213 744.6 705 53.6
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 9.4e-213 744.2 720 55.8
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 4.0e-211 738.8 713 54.6
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 1.2e-210 737.3 552 66.7
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.5e-210 736.9 704 56.2
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 2.2e-209 733.0 721 52.7
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 3.1e-208 729.2 715 53.4
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 3.1e-208 729.2 720 53.3
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 8.5e-206 721.1 711 51.5
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 2.1e-204 716.5 722 52.5
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 1.8e-203 713.4 718 52.5
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.7e-201 706.8 704 55.0
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 2.2e-201 706.4 730 51.1
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 9.1e-200 701.0 722 54.7
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 2.0e-199 699.9 689 53.8
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 3.5e-199 699.1 669 53.8
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.0e-198 697.6 723 52.8
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 4.2e-197 692.2 710 51.5
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 4.7e-196 688.7 721 50.5
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.4e-195 687.2 718 51.4
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 5.2e-195 685.3 718 50.8
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 1.5e-194 683.7 709 51.6
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 1.5e-194 683.7 715 51.2
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 2.0e-194 683.3 719 49.1
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 9.8e-194 681.0 719 50.3
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 4.5e-191 672.2 745 49.1
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 6.8e-187 658.3 716 49.9
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 1.5e-186 657.1 730 49.3
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.5e-186 657.1 718 49.3
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 3.4e-186 656.0 720 48.9
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 6.4e-185 651.7 695 51.7
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 6.2e-180 635.2 726 47.5
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 5.2e-179 632.1 682 49.9
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.5e-178 630.6 661 51.3
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 3.7e-177 625.9 725 47.9
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 7.0e-176 621.7 763 45.5
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 2.8e-172 609.8 714 47.9
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 1.5e-170 604.0 687 47.3
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.3e-169 600.9 671 46.5
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 9.5e-165 584.7 666 48.9
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 3.2e-160 569.7 422 67.5
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 5.2e-155 552.4 511 55.4
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 8.9e-155 551.6 489 61.6
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 3.8e-153 546.2 589 50.4
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 2.7e-151 540.0 722 42.4
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 4.5e-146 522.7 515 54.6
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 3.8e-145 519.6 513 54.4
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 4.9e-145 519.2 541 52.5
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 1.3e-140 504.6 773 40.1
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 6.2e-140 502.3 753 40.0
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 2.1e-135 487.3 637 43.5
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 1.1e-131 474.9 717 39.5
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.4e-128 464.5 764 38.4
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 4.6e-127 459.5 821 36.4
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.9e-125 454.1 697 37.3
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 3.3e-125 453.4 499 51.5
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 1.7e-113 414.5 653 40.1
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 6.1e-111 406.0 379 54.4
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 1.7e-108 397.9 285 68.4
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 1.8e-102 377.9 261 68.2
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 7.0e-91 339.3 331 53.2
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 4.1e-83 313.5 326 50.3
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 5.4e-83 313.2 221 63.3
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.6e-74 285.0 338 48.5
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 6.8e-70 269.6 303 46.2
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 5.4e-59 233.4 313 43.1
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 9.5e-56 222.6 126 78.6
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 9.6e-32 142.9 109 67.0
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 4.2e-27 127.5 154 46.1
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 7.9e-26 123.2 163 47.9
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.8e-25 122.1 86 73.3
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 2.3e-25 121.7 152 48.7
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 3.0e-25 121.3 172 43.6
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 2.4e-22 111.7 133 49.6
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 3.1e-22 111.3 127 45.7
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 5.6e-16 90.5 75 58.7
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 6.0e-10 70.5 67 52.2
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 1.1e-06 59.7 97 37.1
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.8e-06 58.9 113 31.9
RcHm_v2.0_Chr5g0028901 Rosa chinensis HOM05D005685 ORTHO05D007046 4.1e-06 57.8 47 57.4
Eucgr.F01010 Eucalyptus grandis HOM05D000783 ORTHO05D000705 9.0e-06 56.6 68 44.1


User provided reference genes

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