Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 5.8e-131 471.1 272 100.0
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 5.0e-50 202.2 288 49.0
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 1.5e-49 200.7 307 43.6
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 3.4e-46 189.5 289 42.9
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 1.4e-44 184.1 299 43.8
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 4.1e-44 182.6 288 44.4
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 6.6e-42 175.3 312 42.9
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 4.3e-41 172.6 325 40.6
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 9.5e-41 171.4 318 43.7
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 2.1e-40 170.2 320 42.8
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 4.7e-40 169.1 297 41.1
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 4.0e-39 166.0 327 40.4
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 4.0e-39 166.0 328 40.2
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 1.2e-38 164.5 296 41.9
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 5.8e-38 162.2 296 43.9
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 7.6e-38 161.8 321 41.1
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 9.9e-38 161.4 282 44.0
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 9.9e-38 161.4 310 36.5
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 9.9e-38 161.4 296 41.6
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 2.4e-36 156.8 229 42.8
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 3.2e-36 156.4 280 39.6
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 3.0e-34 149.8 310 39.7
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 3.0e-34 149.8 310 38.7
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 5.1e-34 149.1 294 38.8
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 1.5e-33 147.5 243 39.9
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 3.3e-33 146.4 295 39.3
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 4.3e-33 146.0 323 39.9
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 7.3e-33 145.2 290 39.7
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 9.6e-33 144.8 309 38.8
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 1.2e-32 144.4 287 38.7
Nn1g01591 Nelumbo nucifera HOM05D006343 ORTHO05D005694 1.6e-32 144.1 311 41.5
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 4.0e-31 139.4 305 37.7
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 7.6e-30 135.2 293 36.2
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 7.6e-30 135.2 316 36.7
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 9.9e-30 134.8 267 37.5
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 1.3e-29 134.4 322 40.4
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 1.9e-28 130.6 304 35.2
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 4.2e-28 129.4 286 36.0
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.4e-28 129.0 323 33.1
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 5.4e-28 129.0 312 32.7
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 4.6e-27 125.9 325 35.4
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.0e-27 125.6 318 32.4
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.3e-26 124.4 318 32.1
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 2.3e-26 123.6 321 38.3
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 2.3e-26 123.6 308 35.1
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 6.6e-26 122.1 299 38.8
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 8.7e-26 121.7 314 34.1
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 4.3e-25 119.4 315 35.9
CAN.G650.25 Capsicum annuum HOM05D006343 ORTHO05D005694 7.3e-25 118.6 315 33.3
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 7.3e-25 118.6 295 36.6
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 9.6e-25 118.2 308 36.7
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 1.3e-24 117.9 278 37.8
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 3.6e-24 116.3 319 31.3
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.8e-24 115.9 326 30.7
Sopen02g019780 Solanum pennellii HOM05D006343 ORTHO05D005694 4.8e-24 115.9 313 37.1
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 6.2e-24 115.5 308 33.4
Solyc02g070700.3 Solanum lycopersicum HOM05D006343 ORTHO05D005694 8.1e-24 115.2 311 37.3
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 1.4e-23 114.4 308 38.6
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 1.4e-23 114.4 282 39.0
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 5.3e-23 112.5 334 36.8
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 9.0e-23 111.7 300 34.3
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.5e-22 110.9 311 31.2
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 2.6e-22 110.2 237 39.7
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 3.4e-22 109.8 298 35.9
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 4.5e-22 109.4 308 37.0
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 1.3e-21 107.8 339 32.2
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 2.9e-21 106.7 304 35.5
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 4.9e-21 105.9 339 31.6
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 8.4e-21 105.1 319 31.3
CAN.G650.32 Capsicum annuum HOM05D006343 ORTHO05D005694 1.1e-20 104.8 319 32.0
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.4e-20 104.4 318 29.2
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 1.4e-20 104.4 334 34.4
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 1.4e-20 104.4 314 38.5
DCAR_015699 Daucus carota HOM05D006343 ORTHO05D005694 1.9e-20 104.0 286 35.7
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 3.2e-20 103.2 311 29.3
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 4.2e-20 102.8 314 34.4
Oeu035728.1 Olea europaea HOM05D006343 ORTHO05D005694 2.7e-19 100.1 257 33.5
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 7.9e-19 98.6 333 31.2
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 1.0e-18 98.2 305 39.0
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.8e-18 97.4 312 29.2
Sc01g0003550 Simmondsia chinensis HOM05D006343 ORTHO05D005694 2.3e-18 97.1 276 33.3
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.7e-18 95.5 309 28.8
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 6.7e-18 95.5 299 36.8
CAN.G650.35 Capsicum annuum HOM05D006343 ORTHO05D005694 8.7e-18 95.1 314 29.9
CAN.G2424.1 Capsicum annuum HOM05D006343 ORTHO05D005694 1.5e-17 94.4 343 34.7
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.3e-17 93.2 352 28.4
CDE02G1832 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 7.4e-17 92.0 291 30.9
AT4G00310 Arabidopsis thaliana HOM05D012121 ORTHO05D005694 9.6e-17 91.7 345 30.1
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 1.3e-16 91.3 334 29.9
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 2.1e-16 90.5 333 30.9
ECA233G1044 Erigeron canadensis HOM05D006343 ORTHO05D005694 3.6e-16 89.7 277 31.8
Migut.D00457 Erythranthe guttata HOM05D006343 ORTHO05D005694 6.2e-16 89.0 174 44.3
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 8.1e-16 88.6 309 35.9
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 2.4e-15 87.0 330 30.3
CAN.G650.28 Capsicum annuum HOM05D006343 ORTHO05D005694 2.4e-15 87.0 237 31.2
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 2.4e-15 87.0 296 33.8
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 6.9e-15 85.5 312 35.6
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 1.2e-14 84.7 299 34.1
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 2.0e-14 84.0 297 35.0
Gohir.D08G153300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 2.0e-14 84.0 306 30.7
PGSC0003DMG400008290 Solanum tuberosum HOM05D006343 ORTHO05D005694 2.0e-14 84.0 163 41.7
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 9.9e-14 81.6 176 34.1
Carub.0006s3693 Capsella rubella HOM05D012121 ORTHO05D005694 1.7e-13 80.9 322 31.4
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 6.4e-13 79.0 273 31.9
Sc01g0003560 Simmondsia chinensis HOM05D006343 ORTHO05D005694 2.4e-12 77.0 155 40.6
Aqoxy7G00256 Aquilegia oxysepala HOM05D006343 ORTHO05D005694 4.2e-12 76.3 327 31.8
Actinidia10044 Actinidia chinensis HOM05D006343 ORTHO05D005694 5.5e-12 75.9 111 41.4
Gohir.A11G090700 Gossypium hirsutum HOM05D006343 ORTHO05D005694 7.1e-12 75.5 298 32.9
PSO478G4526 Papaver somniferum HOM05D020029 ORTHO05D005694 1.2e-11 74.7 210 32.4
BcaC04g24184 Brassica carinata HOM05D012121 ORTHO05D005694 1.6e-11 74.3 335 27.8
BolC9t52962H Brassica oleracea HOM05D012121 ORTHO05D005694 1.6e-11 74.3 335 27.8
CDE06G1281 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 1.6e-11 74.3 150 36.7
Solyc03g095830.3 Solanum lycopersicum HOM05D064734 ORTHO05D005694 1.6e-11 74.3 262 31.3
C09p00270 Brassica napus HOM05D012121 ORTHO05D005694 4.6e-11 72.8 337 27.6
FAN01G2602 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.6e-11 72.8 189 32.3
Potri.014G099800 Populus trichocarpa HOM05D006343 ORTHO05D005694 5.1e-10 69.3 237 27.8
PSO782G0031 Papaver somniferum HOM05D020029 ORTHO05D005694 1.1e-09 68.2 208 33.7
THA.LOC104801575 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 1.1e-09 68.2 110 42.7
Haze_15537 Corylus avellana HOM05D006343 ORTHO05D005694 1.5e-09 67.8 300 33.3
PSO782G1147 Papaver somniferum HOM05D020029 ORTHO05D005694 3.3e-09 66.6 115 34.8
EL10Ac1g00388 Beta vulgaris HOM05D029301 ORTHO05D005694 7.4e-09 65.5 315 30.8
HPP92_025479 Vanilla planifolia HOM05D049984 ORTHO05D020951 7.4e-09 65.5 254 29.9
PSO782G1271 Papaver somniferum HOM05D020029 ORTHO05D005694 3.7e-08 63.2 188 30.9
PSO478G0137 Papaver somniferum HOM05D020029 ORTHO05D005694 4.8e-08 62.8 124 38.7
HPP92_025480 Vanilla planifolia HOM05D049984 ORTHO05D020951 4.8e-08 62.8 208 26.0
unitig_8.g3737 Utricularia gibba HOM05D006343 ORTHO05D005694 6.2e-08 62.4 288 29.9
Gohir.A08G131933 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.1e-07 61.6 296 32.4
Gorai.004G159200 Gossypium raimondii HOM05D006343 ORTHO05D005694 3.1e-07 60.1 292 28.8
Aa31LG5G640 Aethionema arabicum HOM05D012121 ORTHO05D005694 1.2e-06 58.2 53 56.6
BraA09t35701Z Brassica rapa HOM05D012121 ORTHO05D005694 1.2e-06 58.2 342 25.4
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 1.5e-06 57.8 81 49.4
Medtr3g015950 Medicago truncatula HOM05D006343 ORTHO05D005694 5.8e-06 55.8 297 28.3
PGSC0003DMG400039804 Solanum tuberosum HOM05D064734 ORTHO05D005694 7.6e-06 55.5 107 39.3
CAN.G526.2 Capsicum annuum HOM05D006343 ORTHO05D005694 1.0e-05 55.1 179 30.7


User provided reference genes

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