Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0701F.1_g205890 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 2.2e-180 635.6 337 100.0
Hma1.2p1_2409F.1_g321510 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 4.2e-171 604.7 337 95.8
Dinv15680 Davidia involucrata HOM05D004946 ORTHO05D006101 1.3e-124 450.3 342 73.7
Dinv28107 Davidia involucrata HOM05D004946 ORTHO05D006101 1.5e-107 393.7 342 67.0
Actinidia18931 Actinidia chinensis HOM05D004946 ORTHO05D006101 8.3e-103 377.9 341 65.7
Atru.chr9.855 Acer truncatum HOM05D004946 ORTHO05D006101 1.1e-99 367.5 343 64.1
Cfa019764 Carpinus fangiana HOM05D004946 ORTHO05D006101 4.7e-98 362.1 345 61.4
Haze_18683 Corylus avellana HOM05D004946 ORTHO05D006101 2.4e-94 349.7 345 60.6
MD14G1227000 Malus domestica HOM05D004946 ORTHO05D006101 5.4e-94 348.6 343 63.3
Thecc.03G035700 Theobroma cacao HOM05D004946 ORTHO05D006101 7.1e-94 348.2 343 61.8
CSS0004173 Camellia sinensis var. sinensis HOM05D004946 ORTHO05D006101 1.0e-92 344.4 342 62.3
Prupe.5G221700 Prunus persica HOM05D004946 ORTHO05D006101 6.6e-92 341.7 342 61.7
Potri.012G056200 Populus trichocarpa HOM05D004946 ORTHO05D006101 8.6e-92 341.3 344 60.5
Duzib084G0074 Durio zibethinus HOM05D004946 ORTHO05D006101 7.3e-91 338.2 343 60.6
Rhsim12G0143100 Rhododendron simsii HOM05D004946 ORTHO05D006101 1.6e-90 337.0 345 60.6
QL10p025417 Quercus lobata HOM05D004946 ORTHO05D006101 8.1e-90 334.7 344 59.6
COL.COLO4_11303 Corchorus olitorius HOM05D004946 ORTHO05D006101 4.1e-86 322.4 344 59.0
FAN18G2620 Fragaria x ananassa HOM05D004946 ORTHO05D006101 6.0e-85 318.5 342 59.1
Gohir.D09G049200 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.7e-84 317.0 342 59.1
FvH4_5g12080 Fragaria vesca HOM05D004946 ORTHO05D006101 3.0e-84 316.2 342 58.8
Gorai.006G060600 Gossypium raimondii HOM05D004946 ORTHO05D006101 5.1e-84 315.5 342 58.8
FAN08G1246 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.1e-83 314.3 342 58.2
FAN18G3139 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.9e-83 313.5 342 58.5
Gohir.A08G095000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 6.2e-82 308.5 311 59.8
PGSC0003DMG401005635 Solanum tuberosum HOM05D004946 ORTHO05D006101 6.2e-82 308.5 338 56.5
Gohir.A09G048000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 3.1e-81 306.2 342 57.9
FAN04G0770 Fragaria x ananassa HOM05D004946 ORTHO05D006101 3.4e-80 302.8 337 57.6
Manes.01G011100 Manihot esculenta HOM05D004946 ORTHO05D006101 4.4e-80 302.4 342 57.9
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 9.9e-80 301.2 321 57.0
Sabra12G0039900 Salix brachista HOM05D004946 ORTHO05D006101 2.2e-79 300.1 377 52.8
Gohir.D08G105600 Gossypium hirsutum HOM05D004946 ORTHO05D006101 6.4e-79 298.5 344 56.1
Sopen03g038310 Solanum pennellii HOM05D004946 ORTHO05D006101 8.4e-79 298.1 338 55.6
Actinidia35090 Actinidia chinensis HOM05D004946 ORTHO05D006101 1.6e-77 293.9 284 61.3
DCAR_023206 Daucus carota HOM05D004946 ORTHO05D006101 4.6e-77 292.4 340 56.5
Ciclev10020493m.g Citrus clementina HOM05D004946 ORTHO05D006101 7.8e-77 291.6 342 55.6
vmacro16446 Vaccinium macrocarpon HOM05D004946 ORTHO05D006101 5.1e-76 288.9 345 54.2
RcHm_v2.0_Chr7g0185491 Rosa chinensis HOM05D004946 ORTHO05D006101 1.1e-75 287.7 342 55.0
VMungo0720G2584 Vigna mungo HOM05D004946 ORTHO05D006101 1.9e-75 287.0 345 55.4
ECA238G2506 Erigeron canadensis HOM05D004946 ORTHO05D006101 5.6e-75 285.4 336 54.5
Aqoxy3G00287 Aquilegia oxysepala HOM05D004946 ORTHO05D006101 9.6e-75 284.6 339 56.0
Eucgr.K02226 Eucalyptus grandis HOM05D004946 ORTHO05D006101 1.6e-74 283.9 356 54.2
Nn4g23854 Nelumbo nucifera HOM05D004946 ORTHO05D006101 1.6e-74 283.9 338 55.6
TWI15G0834 Tripterygium wilfordii HOM05D004946 ORTHO05D006101 2.8e-74 283.1 348 53.4
AUR62021632 Chenopodium quinoa HOM05D004946 ORTHO05D006101 4.8e-74 282.3 324 55.2
Oeu064714.1 Olea europaea HOM05D004946 ORTHO05D006101 1.8e-73 280.4 341 53.4
AUR62008463 Chenopodium quinoa HOM05D004946 ORTHO05D006101 9.0e-73 278.1 324 54.3
FAN13G1851 Fragaria x ananassa HOM05D004946 ORTHO05D006101 4.4e-72 275.8 337 55.8
Lalb_Chr05g0222491 Lupinus albus HOM05D004946 ORTHO05D006101 9.9e-72 274.6 345 54.8
Nitab4.5_0009306g0010 Nicotiana tabacum HOM05D004946 ORTHO05D006101 1.3e-71 274.2 342 52.3
Glyma.10G040800 Glycine max HOM05D004946 ORTHO05D006101 2.2e-71 273.5 343 54.8
MSTRG.11071 Avicennia marina HOM05D004946 ORTHO05D006101 2.9e-71 273.1 345 52.8
AUR62038115 Chenopodium quinoa HOM05D004946 ORTHO05D006101 3.8e-71 272.7 338 53.3
Medtr8g104260 Medicago truncatula HOM05D004946 ORTHO05D006101 9.3e-70 268.1 344 52.0
CiPaw.16G086800 Carya illinoinensis HOM05D004946 ORTHO05D006101 4.6e-69 265.8 342 52.0
Nitab4.5_0000974g0090 Nicotiana tabacum HOM05D004946 ORTHO05D006101 1.3e-68 264.2 335 51.9
Nn3g17855 Nelumbo nucifera HOM05D004946 ORTHO05D006101 1.7e-68 263.8 343 51.9
Cc04_g07080 Coffea canephora HOM05D004946 ORTHO05D006101 5.1e-68 262.3 345 50.7
arahy.Tifrunner.gnm1.ann1.94ZJ0E Arachis hypogaea HOM05D004946 ORTHO05D006101 1.1e-67 261.2 343 52.5
Gorai.004G113500 Gossypium raimondii HOM05D004946 ORTHO05D006101 1.5e-67 260.8 342 51.8
PGR044G1576 Punica granatum HOM05D004946 ORTHO05D006101 1.9e-67 260.4 349 52.1
Sc12g0007670 Simmondsia chinensis HOM05D004946 ORTHO05D006101 1.9e-67 260.4 336 50.0
arahy.Tifrunner.gnm1.ann1.G56NCJ Arachis hypogaea HOM05D004946 ORTHO05D006101 4.3e-67 259.2 344 52.6
arahy.Tifrunner.gnm1.ann1.N3S6I2 Arachis hypogaea HOM05D004946 ORTHO05D006101 1.3e-66 257.7 343 52.8
Lalb_Chr09g0331081 Lupinus albus HOM05D004946 ORTHO05D006101 1.3e-66 257.7 342 52.6
Glyma.08G041600 Glycine max HOM05D004946 ORTHO05D006101 8.1e-66 255.0 344 52.3
Nitab4.5_0012710g0020 Nicotiana tabacum HOM05D004946 ORTHO05D006101 8.1e-66 255.0 340 50.6
CANSAT80G1182 Cannabis sativa HOM05D004946 ORTHO05D006101 1.1e-65 254.6 344 51.5
Lj4g0022250 Lotus japonicus HOM05D004946 ORTHO05D006101 1.4e-65 254.2 343 52.8
Psat7g010600 Pisum sativum HOM05D004946 ORTHO05D006101 1.4e-65 254.2 344 49.4
Nitab4.5_0000208g0330 Nicotiana tabacum HOM05D004946 ORTHO05D006101 3.1e-65 253.1 340 50.3
arahy.Tifrunner.gnm1.ann1.X2WJJP Arachis hypogaea HOM05D004946 ORTHO05D006101 5.3e-65 252.3 339 50.7
Oeu056801.1 Olea europaea HOM05D004946 ORTHO05D006101 4.5e-64 249.2 340 51.8
CAN.G1889.4 Capsicum annuum HOM05D004946 ORTHO05D006101 2.2e-63 246.9 340 50.3
MELO3C002087.2 Cucumis melo HOM05D004946 ORTHO05D006101 2.3e-60 236.9 347 50.4
Peaxi162Scf00634g00318 Petunia axillaris HOM05D004946 ORTHO05D006101 2.3e-60 236.9 323 49.2
TPR.G32702 Trifolium pratense HOM05D004946 ORTHO05D006101 8.7e-60 235.0 343 49.6
CsaV3_1G006630 Cucumis sativus L. HOM05D004946 ORTHO05D006101 1.5e-59 234.2 347 50.4
GSVIVG01008294001 Vitis vinifera HOM05D004946 ORTHO05D006101 2.4e-57 226.9 268 55.2
Peaxi162Scf00015g01034 Petunia axillaris HOM05D004946 ORTHO05D006101 3.4e-56 223.0 309 48.9
HPP92_004811 Vanilla planifolia HOM05D004946 ORTHO05D006101 7.6e-56 221.9 343 49.0
BcaB03g15098 Brassica carinata HOM05D004946 ORTHO05D006101 1.0e-55 221.5 355 47.0
C06p33810 Brassica napus HOM05D004946 ORTHO05D006101 2.2e-55 220.3 348 48.6
BcaC08g45619 Brassica carinata HOM05D004946 ORTHO05D006101 2.9e-55 219.9 349 49.0
CDE02G4219 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 3.8e-55 219.5 343 47.5
PSO478G0599 Papaver somniferum HOM05D004946 ORTHO05D006101 4.9e-55 219.2 343 47.8
CARHR066930 Cardamine hirsuta HOM05D004946 ORTHO05D006101 6.5e-55 218.8 346 47.7
Migut.I00881 Erythranthe guttata HOM05D004946 ORTHO05D006101 6.5e-55 218.8 360 47.5
PSO017G0469 Papaver somniferum HOM05D004946 ORTHO05D006101 6.5e-55 218.8 351 48.1
Ca_25442_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 8.4e-55 218.4 343 48.1
BolC6t38494H Brassica oleracea HOM05D004946 ORTHO05D006101 2.5e-54 216.9 348 48.6
A07p29630 Brassica napus HOM05D004946 ORTHO05D006101 4.2e-54 216.1 350 47.4
Sp5g29040 Schrenkiella parvula HOM05D004946 ORTHO05D006101 4.2e-54 216.1 350 47.4
Phvul.007G154000 Phaseolus vulgaris HOM05D004946 ORTHO05D006101 1.2e-53 214.5 345 48.4
GSVIVG01008293001 Vitis vinifera HOM05D004946 ORTHO05D006101 1.8e-52 210.7 338 47.6
Solyc03g119460.4 Solanum lycopersicum HOM05D004946 ORTHO05D006101 3.9e-52 209.5 279 50.5
HanXRQChr06g0184711 Helianthus annuus HOM05D004946 ORTHO05D006101 7.4e-51 205.3 342 45.0
Glyma.05G234300 Glycine max HOM05D004946 ORTHO05D006101 3.7e-50 203.0 342 46.8
AT1G73840 Arabidopsis thaliana HOM05D004946 ORTHO05D006101 1.1e-49 201.4 353 45.6
BcaB03g15093 Brassica carinata HOM05D004946 ORTHO05D006101 1.1e-49 201.4 345 46.4
C06p47990 Brassica napus HOM05D004946 ORTHO05D006101 1.1e-49 201.4 345 46.4
Gohir.D11G132850 Gossypium hirsutum HOM05D004946 ORTHO05D006101 6.9e-49 198.7 185 63.2
Aa31LG4G4160 Aethionema arabicum HOM05D004946 ORTHO05D006101 1.5e-48 197.6 372 41.9
unitig_8.g3895 Utricularia gibba HOM05D004946 ORTHO05D006101 2.6e-48 196.8 331 46.2
Gohir.D05G109701 Gossypium hirsutum HOM05D004946 ORTHO05D006101 3.4e-48 196.4 185 62.7
THA.LOC104812144 Tarenaya hassleriana HOM05D004946 ORTHO05D006101 3.4e-48 196.4 345 46.7
Cpa.g.sc3.508 Carica papaya HOM05D004946 ORTHO05D006101 4.5e-48 196.1 227 55.5
BraA07t30604Z Brassica rapa HOM05D004946 ORTHO05D006101 5.9e-48 195.7 358 45.5
BraA07t31519Z Brassica rapa HOM05D004946 ORTHO05D006101 3.8e-47 193.0 348 46.3
ClCG04G011130 Citrullus lanatus HOM05D004946 ORTHO05D006101 5.0e-47 192.6 335 46.3
Thhalv10018702m.g Eutrema salsugineum HOM05D004946 ORTHO05D006101 8.4e-47 191.8 357 43.7
AL2G33660 Arabidopsis lyrata HOM05D004946 ORTHO05D006101 1.4e-46 191.0 350 44.6
BcaB03g15090 Brassica carinata HOM05D004946 ORTHO05D006101 3.2e-46 189.9 350 43.4
BcaB03g15731 Brassica carinata HOM05D004946 ORTHO05D006101 5.5e-46 189.1 362 42.8
A07p39700 Brassica napus HOM05D004946 ORTHO05D006101 6.1e-45 185.7 346 45.7
HPP92_004808 Vanilla planifolia HOM05D004946 ORTHO05D006101 7.9e-45 185.3 320 46.6
Gohir.D08G202000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 5.1e-44 182.6 159 66.0
Carub.0002s2060 Capsella rubella HOM05D004946 ORTHO05D006101 7.4e-43 178.7 345 43.2
SGA_v2.0_scaffold5G02571 Striga asiatica HOM05D004946 ORTHO05D006101 4.5e-40 169.5 350 42.6
Sed0008793 Sechium edule HOM05D004946 ORTHO05D006101 1.7e-39 167.5 252 46.8
ATR1125G052 Amborella trichopoda HOM05D004946 ORTHO05D006101 7.2e-38 162.2 341 44.3
Ah.11g048200 Amaranthus hybridus HOM05D004946 ORTHO05D006101 9.4e-38 161.8 327 40.1
Ca_15108_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 2.7e-37 160.2 158 60.8
BcaNung06927 Brassica carinata HOM05D004946 ORTHO05D006101 4.8e-34 149.4 176 55.7
MBI02_g11379_MAGBIO Magnolia biondii HOM05D004946 ORTHO05D006101 9.1e-33 145.2 177 52.5
Zm00001eb292700 Zea mays HOM05D004946 ORTHO05D006101 2.0e-32 144.1 344 39.2
DCAR_015143 Daucus carota HOM05D004946 ORTHO05D006101 1.4e-30 137.9 341 37.5
Lsat_1_v5_gn_2_12261 Lactuca sativa HOM05D004946 ORTHO05D006101 2.7e-29 133.7 345 36.8
BcaB03g15096 Brassica carinata HOM05D004946 ORTHO05D006101 3.0e-28 130.2 294 39.8
EL10Ac5g11063 Beta vulgaris HOM05D004946 ORTHO05D006101 8.8e-28 128.6 195 45.1
Ca_25456_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 1.3e-26 124.8 238 42.4
Gohir.A11G277050 Gossypium hirsutum HOM05D004946 ORTHO05D006101 2.6e-24 117.1 86 75.6
CDE06G1062 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 5.2e-20 102.8 216 40.7
Glyma.13G127700 Glycine max HOM05D004946 ORTHO05D006101 1.5e-19 101.3 104 62.5
SGA_v2.0_scaffold37G14831 Striga asiatica HOM05D004946 ORTHO05D006101 3.3e-19 100.1 253 40.7
CDE06G2845 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 1.6e-13 81.3 83 60.2
CSS0023855 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 2.0e-08 64.3 60 61.7
Gorai.009G260200 Gossypium raimondii HOM05D004266 ORTHO05D005151 2.7e-08 63.9 343 30.6
Lsat_1_v5_gn_8_63781 Lactuca sativa HOM05D003883 ORTHO05D004605 4.5e-08 63.2 75 50.7
Gohir.A05G247600 Gossypium hirsutum HOM05D004266 ORTHO05D005151 2.9e-07 60.5 343 30.0
Cpa.g.sc26.137 Carica papaya HOM05D004266 ORTHO05D005151 1.9e-06 57.8 345 30.4
Gohir.D05G249100 Gossypium hirsutum HOM05D004266 ORTHO05D005151 1.9e-06 57.8 342 28.7
Zm00001eb201080 Zea mays HOM05D004266 ORTHO05D005151 2.5e-06 57.4 82 46.3
Oeu025253.2 Olea europaea HOM05D004266 ORTHO05D005151 4.2e-06 56.6 38 73.7
Lsat_1_v5_gn_9_93500 Lactuca sativa HOM05D001433 ORTHO05D013129 7.2e-06 55.8 35 80.0


User provided reference genes

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