Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 1.6e-112 409.5 205 100.0
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 3.6e-101 371.7 187 99.5
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 3.2e-89 332.0 191 84.8
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 9.6e-86 320.5 202 78.2
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 3.6e-85 318.5 202 77.2
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 1.4e-84 316.6 205 74.1
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 1.8e-84 316.2 205 74.1
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 4.0e-84 315.1 188 81.9
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 4.0e-84 315.1 205 76.1
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 5.3e-84 314.7 187 80.7
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 6.9e-84 314.3 191 79.6
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 1.2e-83 313.5 205 74.1
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 1.2e-83 313.5 187 80.7
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 2.0e-83 312.8 191 79.6
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 2.0e-83 312.8 187 80.2
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 3.4e-83 312.0 205 73.7
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 3.4e-83 312.0 187 79.7
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 5.8e-83 311.2 205 74.1
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 7.6e-83 310.8 187 79.1
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 9.9e-83 310.5 202 75.2
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 1.7e-82 309.7 205 73.7
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 2.2e-82 309.3 202 73.3
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 2.2e-82 309.3 202 73.3
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 4.9e-82 308.1 205 73.2
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 6.4e-82 307.8 202 72.8
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 6.4e-82 307.8 191 77.5
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 9.3e-81 303.9 199 75.4
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 2.1e-80 302.8 188 78.2
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 2.7e-80 302.4 188 77.7
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 2.7e-80 302.4 205 72.2
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 3.5e-80 302.0 205 72.2
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 6.0e-80 301.2 193 76.2
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 6.0e-80 301.2 188 77.1
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 1.3e-79 300.1 185 78.9
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 1.8e-79 299.7 191 74.9
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 1.8e-79 299.7 173 81.5
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 2.3e-79 299.3 191 76.4
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 2.3e-79 299.3 187 77.0
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 2.3e-79 299.3 188 77.1
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 3.0e-79 298.9 188 77.1
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 3.0e-79 298.9 191 74.9
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 3.9e-79 298.5 188 74.5
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 6.7e-79 297.7 188 76.6
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 6.7e-79 297.7 191 74.3
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 8.7e-79 297.4 224 67.4
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 1.1e-78 297.0 191 75.9
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 1.1e-78 297.0 191 75.4
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 1.9e-78 296.2 183 77.0
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 1.9e-78 296.2 181 77.3
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 1.9e-78 296.2 205 71.2
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 2.5e-78 295.8 182 78.6
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 2.5e-78 295.8 191 74.9
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 3.3e-78 295.4 169 83.4
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 5.6e-78 294.7 188 76.1
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 7.4e-78 294.3 185 78.4
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 7.4e-78 294.3 195 74.9
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 1.3e-77 293.5 180 79.4
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 1.6e-77 293.1 191 73.3
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 4.8e-77 291.6 205 71.2
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 6.2e-77 291.2 186 75.3
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 1.4e-76 290.0 188 73.4
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 2.4e-76 289.3 187 73.8
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 3.1e-76 288.9 201 70.1
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 5.3e-76 288.1 185 75.1
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 5.3e-76 288.1 180 74.4
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 5.3e-76 288.1 181 74.6
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 9.0e-76 287.3 197 71.6
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 1.5e-75 286.6 188 73.9
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 2.0e-75 286.2 181 73.5
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 2.6e-75 285.8 180 73.9
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 2.6e-75 285.8 187 74.9
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 3.4e-75 285.4 183 74.9
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 7.6e-75 284.3 201 70.1
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 9.9e-75 283.9 204 70.1
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 9.9e-75 283.9 189 75.1
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.3e-74 283.5 181 72.9
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 1.3e-74 283.5 205 68.8
RcHm_v2.0_Chr4g0410601 Rosa chinensis HOM05D005712 ORTHO05D007865 2.2e-74 282.7 179 74.3
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 2.9e-74 282.3 205 69.8
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 4.9e-74 281.6 205 69.3
FAN08G0897 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.4e-73 280.0 181 72.4
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 2.4e-73 279.3 193 73.1
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 3.2e-73 278.9 193 71.0
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 3.2e-73 278.9 188 72.3
Medtr3g116050 Medicago truncatula HOM05D005712 ORTHO05D007865 4.2e-73 278.5 205 67.3
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 5.5e-73 278.1 181 75.1
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 5.5e-73 278.1 181 75.1
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 5.5e-73 278.1 182 74.7
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 5.5e-73 278.1 168 78.6
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 5.5e-73 278.1 191 70.7
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 7.1e-73 277.7 193 72.0
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 9.3e-73 277.3 181 74.0
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 9.3e-73 277.3 181 74.0
TPR.G38133 Trifolium pratense HOM05D005712 ORTHO05D007865 1.6e-72 276.6 190 70.0
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 2.1e-72 276.2 218 65.1
Psat5g008680 Pisum sativum HOM05D005712 ORTHO05D007865 2.7e-72 275.8 188 72.3
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 4.6e-72 275.0 190 72.1
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 1.0e-71 273.9 148 85.8
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 2.3e-71 272.7 181 74.0
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 2.3e-71 272.7 182 73.6
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 3.0e-71 272.3 191 68.1
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 3.0e-71 272.3 191 68.1
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 1.9e-70 269.6 228 61.4
HPP92_022548 Vanilla planifolia HOM05D005712 ORTHO05D007865 1.1e-68 263.8 186 68.8
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 2.4e-68 262.7 167 77.8
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 3.4e-67 258.8 180 70.6
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 1.0e-63 247.3 152 80.3
SEGI_27803 Sequoiadendron giganteum HOM05D005712 ORTHO05D007865 3.1e-60 235.7 187 61.0
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 3.1e-60 235.7 188 60.1
Os04g0584900 Oryza sativa ssp. japonica HOM05D005712 ORTHO05D007865 9.0e-60 234.2 185 60.0
Zm00001eb428100 Zea mays HOM05D005712 ORTHO05D007865 4.5e-59 231.9 188 59.0
Mapoly0022s0159 Marchantia polymorpha HOM05D005712 ORTHO05D007865 2.8e-53 212.6 181 57.5
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 4.8e-53 211.8 121 82.6
SMO276G0054 Selaginella moellendorffii HOM05D005712 ORTHO05D007865 1.5e-51 206.8 168 58.9
AagrBONN_evm.TU.Sc2ySwM_117.1031 Anthoceros agrestis HOM05D005712 ORTHO05D007865 7.7e-51 204.5 187 54.5
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 1.2e-48 197.2 116 80.2
Pp3c9_6030 Physcomitrium patens HOM05D005712 ORTHO05D007865 3.0e-47 192.6 183 54.6
Pp3c15_5620 Physcomitrium patens HOM05D005712 ORTHO05D007865 1.7e-45 186.8 175 53.7
Cpa.g.c44851 Carica papaya HOM05D005712 ORTHO05D007865 1.2e-30 137.5 69 88.4
Cpa.g.c30366.3 Carica papaya HOM05D005712 ORTHO05D007865 3.3e-30 136.0 79 75.9
Oeu019902.1 Olea europaea HOM05D005712 ORTHO05D007865 5.4e-20 102.1 64 78.1
A07p15460 Brassica napus HOM05D005712 ORTHO05D007865 2.0e-14 83.6 61 63.9
BcaB03g14422 Brassica carinata HOM05D005712 ORTHO05D014368 1.2e-06 57.8 43 62.8


User provided reference genes

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