Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 6.9e-218 760.4 393 100.0
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 6.9e-218 760.4 393 100.0
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 5.5e-199 697.6 393 90.1
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 4.4e-196 688.0 393 89.1
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 4.4e-196 688.0 393 89.1
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 1.7e-195 686.0 393 87.8
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.1e-194 683.3 393 89.3
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 1.8e-194 682.6 393 88.8
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 7.0e-194 680.6 393 88.5
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 5.0e-192 674.5 393 88.5
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 5.0e-192 674.5 393 87.3
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 6.5e-192 674.1 393 86.8
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 8.5e-192 673.7 393 87.3
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 1.6e-190 669.5 393 85.5
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 2.1e-190 669.1 393 87.8
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 2.7e-190 668.7 393 87.3
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 2.7e-190 668.7 392 87.2
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 6.8e-189 664.1 393 86.3
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 8.8e-189 663.7 393 87.0
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 2.6e-188 662.1 394 86.5
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 4.4e-188 661.4 393 86.8
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 9.8e-188 660.2 393 86.3
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 8.3e-187 657.1 393 85.0
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 1.1e-186 656.8 393 84.7
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.8e-186 656.0 437 78.3
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 7.0e-186 654.1 393 84.5
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 1.3e-184 649.8 393 84.2
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 2.9e-184 648.7 393 84.5
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 5.0e-184 647.9 394 85.0
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 8.6e-184 647.1 393 85.5
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 1.5e-183 646.4 393 86.0
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 1.5e-183 646.4 393 84.7
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 2.5e-183 645.6 432 78.5
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 2.5e-183 645.6 393 84.5
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 3.3e-183 645.2 393 82.7
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 5.6e-183 644.4 393 81.7
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 5.6e-183 644.4 393 85.0
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 5.6e-183 644.4 406 84.2
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 9.5e-183 643.7 458 75.3
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 9.5e-183 643.7 393 84.0
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 9.5e-183 643.7 393 83.5
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 1.2e-182 643.3 393 85.0
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 1.6e-182 642.9 393 83.7
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 4.7e-182 641.3 393 85.0
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 4.7e-182 641.3 421 81.0
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 8.0e-182 640.6 393 83.0
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.3e-181 639.0 393 84.5
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 4.0e-181 638.3 393 84.5
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 4.0e-181 638.3 393 84.5
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 4.0e-181 638.3 393 83.7
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 1.2e-180 636.7 393 82.7
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 4.4e-180 634.8 393 83.5
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 9.8e-180 633.6 393 81.2
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 2.2e-179 632.5 393 81.7
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 3.7e-179 631.7 393 81.4
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 5.0e-176 621.3 393 81.7
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.1e-175 620.2 393 80.7
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 3.3e-175 618.6 393 80.2
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 3.3e-175 618.6 393 80.2
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 1.4e-173 613.2 393 80.7
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 3.1e-173 612.1 408 77.5
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 5.2e-173 611.3 393 81.7
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 2.0e-172 609.4 393 79.6
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 2.0e-172 609.4 374 83.2
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 1.3e-171 606.7 393 79.9
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 3.2e-170 602.1 347 87.3
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 1.0e-168 597.0 394 78.2
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.3e-168 596.7 393 77.9
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 1.3e-168 596.7 393 78.4
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 8.6e-168 594.0 393 78.6
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 1.1e-167 593.6 345 86.4
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 2.5e-167 592.4 393 77.4
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 9.5e-167 590.5 345 86.7
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 1.6e-166 589.7 393 77.4
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 4.7e-166 588.2 393 76.6
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.4e-165 586.6 393 76.3
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 2.3e-165 585.9 393 76.3
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 3.1e-165 585.5 393 76.1
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 4.0e-165 585.1 394 74.4
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 6.8e-165 584.3 347 84.7
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 1.2e-164 583.6 446 70.9
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 3.4e-164 582.0 394 76.1
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 3.4e-164 582.0 394 76.1
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.4e-164 582.0 394 76.1
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 3.4e-164 582.0 394 76.1
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.3e-163 580.1 393 79.1
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 2.9e-163 578.9 393 75.3
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 1.1e-162 577.0 393 74.3
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 2.4e-162 575.9 393 74.8
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 6.6e-160 567.8 395 72.9
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 3.3e-159 565.5 393 71.8
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 2.3e-157 559.3 365 77.8
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.9e-154 549.7 330 87.0
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 3.9e-152 542.0 365 75.6
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 4.7e-150 535.0 381 73.5
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 4.3e-143 511.9 387 70.3
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 5.4e-138 495.0 305 85.2
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 3.6e-134 482.3 394 62.9
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 6.4e-131 471.5 394 61.2
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 1.6e-129 466.8 348 70.7
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 7.9e-129 464.5 394 61.4
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 9.0e-125 451.1 400 59.8
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 2.1e-118 429.9 390 55.6
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 5.5e-98 362.1 344 60.8
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 3.0e-80 303.1 207 79.2
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 2.8e-70 270.0 188 67.0
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 2.5e-66 256.9 199 70.9
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 9.5e-66 255.0 130 99.2
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 2.3e-64 250.4 144 84.7
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 3.9e-59 233.0 382 38.5
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.1e-58 231.5 174 62.1
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 5.6e-58 229.2 173 66.5
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 1.6e-36 157.9 90 81.1
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.9e-34 151.0 90 76.7
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 5.6e-34 149.4 180 49.4
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 7.3e-34 149.1 90 85.6
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 1.8e-32 144.4 178 48.3
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 1.8e-32 144.4 157 53.5
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 1.8e-32 144.4 157 53.5
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 3.0e-27 127.1 167 47.3
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 4.0e-24 116.7 77 71.4
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 8.4e-22 109.0 58 89.7
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.7e-20 104.0 90 66.7
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 1.9e-18 97.8 87 63.2
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 6.2e-09 66.2 162 22.8
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 1.1e-08 65.5 160 25.6
Glyma.11G026400 Glycine max HOM05D004454 ORTHO05D005462 9.0e-08 62.4 162 24.7
Phvul.007G021500 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 9.0e-08 62.4 160 25.0
Glyma.01G216500 Glycine max HOM05D004454 ORTHO05D005462 1.5e-07 61.6 162 24.7
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 1.5e-07 61.6 172 22.7
VMungo1215G3435 Vigna mungo HOM05D004454 ORTHO05D005462 2.0e-07 61.2 159 24.5
Phvul.002G154200 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 3.4e-07 60.5 159 24.5
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 5.8e-07 59.7 161 23.0
DCAR_031479 Daucus carota HOM05D004454 ORTHO05D005462 7.6e-07 59.3 162 23.5
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 1.0e-06 58.9 162 23.5
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 1.0e-06 58.9 160 21.9
SEGI_03047 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.2e-06 57.8 47 70.2
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 2.9e-06 57.4 162 22.2


User provided reference genes

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