Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 0.0e+00 1082.4 561 100.0
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 3.1e-280 968.0 561 87.9
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 5.0e-278 960.7 561 88.1
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 5.0e-278 960.7 561 88.1
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 6.3e-273 943.7 561 87.2
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 2.7e-268 928.3 561 84.5
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 1.8e-267 925.6 562 84.0
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 2.3e-267 925.2 557 86.5
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 3.4e-266 921.4 561 84.1
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 1.7e-265 919.1 562 84.2
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 2.8e-265 918.3 563 85.1
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 2.4e-264 915.2 561 85.0
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 3.1e-264 914.8 561 84.5
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 3.1e-264 914.8 561 84.7
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 1.2e-263 912.9 561 84.5
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.0e-263 912.1 562 84.0
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 6.1e-260 900.6 626 76.5
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 8.0e-260 900.2 600 78.3
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 2.3e-259 898.7 562 82.0
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 4.0e-259 897.9 562 82.9
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 6.8e-259 897.1 562 81.7
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 2.6e-258 895.2 561 81.6
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 5.7e-258 894.0 560 81.4
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 3.7e-257 891.3 612 78.6
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 4.9e-257 891.0 561 82.5
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 1.1e-256 889.8 562 82.0
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 1.1e-256 889.8 562 82.4
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 3.2e-256 888.3 561 80.9
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 1.6e-255 885.9 562 82.6
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 4.6e-255 884.4 561 81.3
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 1.9e-253 879.0 562 81.5
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 1.9e-253 879.0 561 81.1
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 1.6e-252 875.9 561 81.1
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 1.8e-251 872.5 575 80.2
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 2.3e-251 872.1 561 80.0
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 2.3e-251 872.1 562 80.8
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 4.0e-251 871.3 542 83.4
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.2e-250 869.8 562 79.9
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 2.6e-250 868.6 561 80.0
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 3.4e-250 868.2 561 80.4
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 7.5e-250 867.1 561 79.0
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 9.8e-250 866.7 561 80.0
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.4e-248 862.8 562 80.8
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 4.1e-248 861.3 562 81.3
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 4.1e-248 861.3 561 79.3
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 4.6e-247 857.8 561 80.2
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 7.8e-247 857.1 562 79.2
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 1.1e-245 853.2 562 79.5
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 9.5e-245 850.1 561 77.9
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 9.5e-245 850.1 561 77.9
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 2.8e-244 848.6 565 78.1
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 6.8e-243 844.0 539 80.0
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 1.2e-242 843.2 562 77.6
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 1.5e-242 842.8 562 79.4
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.6e-242 842.0 565 78.8
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 3.4e-242 841.6 515 83.5
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 4.4e-242 841.3 557 79.2
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 1.3e-241 839.7 561 77.7
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.2e-240 835.1 560 78.8
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 4.1e-240 834.7 560 78.0
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 1.0e-238 830.1 562 76.7
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 6.2e-236 820.8 648 69.3
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 6.2e-236 820.8 576 77.1
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 4.0e-235 818.1 566 75.3
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 6.8e-235 817.4 546 79.5
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 1.4e-232 809.7 514 81.1
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 1.9e-229 799.3 561 74.0
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 2.5e-229 798.9 513 80.1
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 9.6e-229 797.0 562 73.7
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 6.2e-228 794.3 561 74.3
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 1.4e-227 793.1 562 73.3
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 5.2e-227 791.2 544 75.9
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 1.3e-225 786.6 562 71.4
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 6.4e-225 784.3 562 73.0
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 1.4e-224 783.1 562 73.3
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 7.1e-224 780.8 562 72.8
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 4.6e-223 778.1 562 72.4
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 4.6e-223 778.1 532 75.6
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 7.8e-223 777.3 594 72.2
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 2.5e-221 772.3 563 72.1
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 2.5e-221 772.3 563 72.1
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 4.3e-221 771.5 576 70.8
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 2.8e-220 768.8 562 71.0
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.4e-219 766.5 562 71.7
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 3.4e-218 761.9 563 71.6
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.4e-218 761.9 562 71.5
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 9.9e-218 760.4 393 100.0
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 4.9e-217 758.1 562 71.9
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.1e-216 756.9 533 74.1
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 2.4e-216 755.7 512 76.8
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 4.3e-205 718.4 476 78.4
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 1.2e-183 647.1 455 72.1
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 1.4e-176 623.6 562 58.5
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 1.6e-175 620.2 434 71.7
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 3.6e-175 619.0 563 57.7
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 3.2e-168 595.9 563 56.5
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 5.5e-168 595.1 554 60.3
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 5.5e-168 595.1 569 56.2
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 5.4e-155 552.0 566 51.1
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.2e-154 550.8 330 87.0
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 3.0e-150 536.2 382 73.6
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.2e-138 497.7 524 57.4
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 2.7e-138 496.5 306 85.3
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 2.7e-130 469.9 340 70.6
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 1.0e-129 468.0 349 70.8
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 6.6e-121 438.7 356 61.2
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 2.9e-108 396.7 257 77.0
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 7.6e-85 318.9 542 38.2
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 1.5e-80 304.7 208 79.3
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 1.1e-75 288.5 197 75.6
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.2e-66 258.5 200 71.0
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.4e-65 255.0 130 99.2
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 3.3e-64 250.4 144 84.7
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.6e-58 231.5 174 62.1
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 8.0e-50 202.6 161 68.3
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 4.7e-34 150.2 90 76.7
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 8.0e-34 149.4 180 49.4
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.0e-33 149.1 90 85.6
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 2.6e-32 144.4 178 48.3
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 2.6e-32 144.4 157 53.5
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 2.6e-32 144.4 157 53.5
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.6e-32 144.4 129 65.1
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.1e-27 129.0 131 58.0
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 4.3e-27 127.1 167 47.3
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 5.8e-24 116.7 77 71.4
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 1.2e-21 109.0 58 89.7
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.9e-20 104.0 90 66.7
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 2.8e-18 97.8 87 63.2
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 5.4e-14 83.6 89 52.8
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 8.9e-09 66.2 162 22.8
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 1.5e-08 65.5 160 25.6
Glyma.11G026400 Glycine max HOM05D004454 ORTHO05D005462 1.3e-07 62.4 162 24.7
Phvul.007G021500 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 1.3e-07 62.4 160 25.0
Glyma.01G216500 Glycine max HOM05D004454 ORTHO05D005462 2.2e-07 61.6 162 24.7
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 2.2e-07 61.6 172 22.7
VMungo1215G3435 Vigna mungo HOM05D004454 ORTHO05D005462 2.9e-07 61.2 159 24.5
Phvul.002G154200 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 4.9e-07 60.5 159 24.5
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 8.3e-07 59.7 161 23.0
DCAR_031479 Daucus carota HOM05D004454 ORTHO05D005462 1.1e-06 59.3 162 23.5
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.1e-06 59.3 47 53.2
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 1.4e-06 58.9 162 23.5
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 1.4e-06 58.9 160 21.9
SEGI_03047 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.4e-06 58.9 47 70.2
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 4.1e-06 57.4 162 22.2


User provided reference genes

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