Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 7.8e-32 139.8 69 100.0
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.2e-26 121.7 69 81.2
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 2.9e-26 121.3 68 82.4
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 2.9e-26 121.3 69 84.1
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 4.9e-26 120.6 69 79.7
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 4.9e-26 120.6 69 82.6
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 6.4e-26 120.2 67 83.6
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 6.4e-26 120.2 69 82.6
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 6.4e-26 120.2 67 85.1
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 6.4e-26 120.2 69 82.6
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 8.4e-26 119.8 67 85.1
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 8.4e-26 119.8 66 84.8
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 8.4e-26 119.8 69 81.2
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 8.4e-26 119.8 69 78.3
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 1.4e-25 119.0 67 85.1
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 1.4e-25 119.0 67 85.1
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 1.4e-25 119.0 69 78.3
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 1.9e-25 118.6 67 82.1
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 2.4e-25 118.2 67 83.6
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 2.4e-25 118.2 67 80.6
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 2.4e-25 118.2 67 80.6
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 2.4e-25 118.2 67 85.1
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 2.4e-25 118.2 67 85.1
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 2.4e-25 118.2 67 85.1
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 2.4e-25 118.2 69 81.2
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 3.2e-25 117.9 69 75.4
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 3.2e-25 117.9 67 85.1
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 3.2e-25 117.9 67 82.1
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 4.1e-25 117.5 67 85.1
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 5.4e-25 117.1 66 83.3
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 5.4e-25 117.1 67 80.6
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 5.4e-25 117.1 67 82.1
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 7.1e-25 116.7 67 82.1
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 7.1e-25 116.7 67 82.1
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 7.1e-25 116.7 67 82.1
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 9.2e-25 116.3 67 83.6
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 9.2e-25 116.3 67 82.1
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 1.2e-24 115.9 67 80.6
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 1.6e-24 115.5 66 80.3
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 1.6e-24 115.5 66 83.3
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 1.6e-24 115.5 67 82.1
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 1.6e-24 115.5 67 80.6
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 1.6e-24 115.5 66 83.3
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 2.1e-24 115.2 66 81.8
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 2.1e-24 115.2 67 77.6
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.1e-24 115.2 67 82.1
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.1e-24 115.2 67 82.1
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 2.1e-24 115.2 67 80.6
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 2.1e-24 115.2 67 79.1
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 2.1e-24 115.2 67 80.6
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 2.7e-24 114.8 67 82.1
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 2.7e-24 114.8 67 79.1
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.7e-24 114.8 67 82.1
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 2.7e-24 114.8 67 79.1
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 2.7e-24 114.8 67 82.1
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 2.7e-24 114.8 67 79.1
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 3.5e-24 114.4 67 79.1
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 3.5e-24 114.4 67 76.1
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 4.6e-24 114.0 67 80.6
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 4.6e-24 114.0 67 80.6
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 6.0e-24 113.6 67 82.1
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 6.0e-24 113.6 67 79.1
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 6.0e-24 113.6 69 76.8
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 6.0e-24 113.6 66 81.8
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 6.0e-24 113.6 67 77.6
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 7.8e-24 113.2 69 81.2
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 7.8e-24 113.2 67 80.6
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 7.8e-24 113.2 69 75.4
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 7.8e-24 113.2 67 79.1
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 7.8e-24 113.2 66 81.8
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 7.8e-24 113.2 67 79.1
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 7.8e-24 113.2 66 83.3
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 1.0e-23 112.8 67 80.6
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 1.0e-23 112.8 66 81.8
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.0e-23 112.8 67 80.6
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.0e-23 112.8 67 80.6
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 1.0e-23 112.8 67 80.6
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 1.0e-23 112.8 69 75.4
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 1.0e-23 112.8 66 78.8
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 1.0e-23 112.8 67 80.6
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 1.3e-23 112.5 67 77.6
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.3e-23 112.5 66 78.8
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.3e-23 112.5 66 78.8
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.3e-23 112.5 67 77.6
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.3e-23 112.5 67 76.1
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 1.3e-23 112.5 67 80.6
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.7e-23 112.1 69 78.3
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 1.7e-23 112.1 67 77.6
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 1.7e-23 112.1 67 79.1
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 1.7e-23 112.1 67 79.1
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 2.3e-23 111.7 69 79.7
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 2.3e-23 111.7 67 77.6
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 3.0e-23 111.3 66 81.8
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 3.0e-23 111.3 67 77.6
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 3.9e-23 110.9 69 76.8
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 3.9e-23 110.9 69 75.4
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 3.9e-23 110.9 66 78.8
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 5.1e-23 110.5 66 80.3
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 5.1e-23 110.5 67 74.6
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 5.1e-23 110.5 66 80.3
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 6.6e-23 110.2 69 75.4
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 6.6e-23 110.2 69 75.4
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 6.6e-23 110.2 69 75.4
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 6.6e-23 110.2 69 76.8
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 6.6e-23 110.2 67 76.1
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 6.6e-23 110.2 67 79.1
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 8.6e-23 109.8 69 76.8
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 8.6e-23 109.8 69 75.4
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 1.1e-22 109.4 67 76.1
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.5e-22 109.0 67 74.6
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 1.5e-22 109.0 69 76.8
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 1.5e-22 109.0 66 81.8
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 1.9e-22 108.6 67 71.6
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 2.5e-22 108.2 67 74.6
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 2.5e-22 108.2 67 76.1
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 3.3e-22 107.8 69 73.9
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 3.3e-22 107.8 69 73.9
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 3.3e-22 107.8 69 75.4
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 4.3e-22 107.5 67 74.6
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 5.6e-22 107.1 69 73.9
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 5.6e-22 107.1 69 73.9
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 5.6e-22 107.1 68 72.1
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 5.6e-22 107.1 68 72.1
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 7.3e-22 106.7 69 73.9
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 7.3e-22 106.7 69 73.9
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 7.3e-22 106.7 69 73.9
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 7.3e-22 106.7 69 73.9
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 7.3e-22 106.7 69 73.9
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 7.3e-22 106.7 69 73.9
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 7.3e-22 106.7 69 73.9
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 7.3e-22 106.7 69 73.9
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 7.3e-22 106.7 67 70.1
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 7.3e-22 106.7 67 74.6
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 9.6e-22 106.3 68 73.5
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 2.1e-21 105.1 69 71.0
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 2.1e-21 105.1 67 68.7
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 3.6e-21 104.4 65 72.3
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 3.6e-21 104.4 66 75.8
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 3.6e-21 104.4 66 71.2
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 6.2e-21 103.6 69 72.5
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 6.2e-21 103.6 67 71.6
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 6.2e-21 103.6 67 74.6
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 1.1e-20 102.8 67 74.6
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 1.8e-20 102.1 67 68.7
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.4e-20 101.7 67 76.1
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 3.1e-20 101.3 64 76.6
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.5e-19 99.0 61 75.4
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 2.0e-19 98.6 66 74.2
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 4.9e-18 94.0 51 88.2
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 3.2e-17 91.3 49 85.7
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 7.1e-17 90.1 51 82.4
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 6.0e-16 87.0 50 80.0
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 1.7e-15 85.5 69 66.7
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 1.7e-15 85.5 51 78.4
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 2.3e-15 85.1 50 80.0
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 2.3e-15 85.1 53 73.6
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 6.6e-15 83.6 53 71.7
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 2.5e-14 81.6 51 74.5
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 5.6e-14 80.5 51 72.5
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.3e-13 79.3 50 70.0
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 2.8e-13 78.2 60 65.0
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 4.0e-12 74.3 53 67.9
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 6.9e-12 73.6 51 68.6
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 9.0e-12 73.2 59 50.8
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 9.9e-11 69.7 50 68.0
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 9.9e-11 69.7 59 54.2
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 4.9e-10 67.4 53 67.9
PSO384G1920 Papaver somniferum HOM05D004126 ORTHO05D004818 4.9e-10 67.4 45 71.1
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 9.3e-09 63.2 49 63.3
Pp3c19_5160 Physcomitrium patens HOM05D004126 ORTHO05D004818 4.6e-08 60.8 61 49.2
BcaB02g06868 Brassica carinata HOM05D004126 ORTHO05D004818 2.3e-07 58.5 36 72.2


User provided reference genes

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