Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 6.5e-174 614.0 320 100.0
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 4.0e-123 445.3 322 76.4
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.0e-122 443.0 320 74.4
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.1e-117 427.2 320 71.6
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 1.5e-114 416.8 323 71.5
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 8.4e-113 411.0 320 67.5
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 2.4e-107 392.9 321 66.7
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 2.9e-105 386.0 322 69.3
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 6.5e-105 384.8 324 66.4
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.6e-103 380.2 322 64.3
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.7e-103 379.4 323 65.3
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 6.3e-100 368.2 321 64.8
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 6.9e-99 364.8 320 63.1
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 2.6e-98 362.8 315 64.4
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 1.7e-97 360.1 331 63.1
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 2.2e-97 359.8 326 63.5
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.0e-94 350.9 320 61.2
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.0e-94 350.9 320 61.2
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.0e-94 350.9 320 60.9
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 2.5e-93 346.3 319 62.1
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 1.6e-92 343.6 323 61.3
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 2.2e-92 343.2 315 61.0
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 2.8e-92 342.8 309 63.4
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.8e-92 342.8 337 57.6
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.8e-92 342.8 337 57.6
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 3.1e-91 339.3 323 60.7
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 2.6e-90 336.3 309 61.8
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 4.5e-90 335.5 303 59.7
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 2.2e-89 333.2 307 60.9
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 3.8e-89 332.4 324 61.1
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.8e-89 332.4 323 56.3
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.5e-88 329.7 317 60.9
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.2e-87 327.4 323 55.7
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 1.6e-87 327.0 320 60.0
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.6e-87 327.0 297 60.3
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 2.3e-86 323.2 319 59.2
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 6.7e-86 321.6 324 59.3
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 8.8e-86 321.2 316 60.1
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 7.4e-85 318.2 303 58.7
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 7.4e-85 318.2 317 59.0
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.2e-84 316.6 317 59.0
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 6.3e-84 315.1 317 58.7
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 8.2e-84 314.7 315 59.0
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.4e-83 313.9 306 59.8
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.8e-83 313.5 317 58.7
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.5e-82 310.5 295 58.6
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 4.5e-82 308.9 304 60.2
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 1.3e-81 307.4 302 59.6
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 2.9e-81 306.2 304 57.9
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.9e-80 303.5 342 57.3
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.5e-80 303.1 325 56.9
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 5.2e-78 295.4 300 59.0
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 5.2e-78 295.4 300 56.0
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 7.4e-77 291.6 330 52.7
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 2.2e-76 290.0 300 55.7
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 3.1e-75 286.2 310 52.9
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 5.3e-75 285.4 282 57.1
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 1.2e-74 284.3 302 54.3
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 1.2e-74 284.3 311 54.7
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 4.5e-74 282.3 300 54.0
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 5.0e-73 278.9 284 59.2
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 1.1e-72 277.7 300 55.0
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 1.5e-72 277.3 297 55.6
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 1.5e-72 277.3 299 53.5
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 1.9e-72 276.9 300 53.3
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 3.2e-72 276.2 299 53.2
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 1.2e-71 274.2 314 51.9
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 1.2e-71 274.2 295 53.6
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 1.6e-71 273.9 303 52.1
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 2.1e-71 273.5 311 53.4
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.7e-71 273.1 291 55.3
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 6.1e-71 271.9 302 55.3
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 6.1e-71 271.9 307 52.8
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.3e-70 270.0 299 54.2
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 3.0e-70 269.6 300 53.7
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 3.0e-70 269.6 312 50.6
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 5.2e-70 268.9 329 51.1
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 5.2e-70 268.9 257 57.2
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 6.7e-70 268.5 299 51.5
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 6.7e-70 268.5 299 52.5
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 8.8e-70 268.1 314 52.9
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 1.2e-69 267.7 308 49.7
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 2.0e-69 266.9 312 50.6
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 2.6e-69 266.5 313 50.2
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 3.3e-69 266.2 304 51.6
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 3.3e-69 266.2 313 51.1
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 5.7e-69 265.4 299 52.8
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 9.7e-69 264.6 312 49.4
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 9.7e-69 264.6 299 53.5
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 2.2e-68 263.5 312 51.3
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 4.8e-68 262.3 307 51.5
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 6.3e-68 261.9 305 52.5
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.1e-67 261.2 314 50.3
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 1.1e-67 261.2 315 52.7
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 1.8e-67 260.4 313 49.2
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 9.1e-67 258.1 304 50.7
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 7.7e-66 255.0 307 52.8
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 2.9e-65 253.1 313 49.8
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.9e-65 253.1 266 53.8
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 8.5e-65 251.5 316 49.7
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 1.5e-64 250.8 314 49.7
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 3.2e-64 249.6 305 49.5
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 7.2e-64 248.4 313 49.5
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 7.2e-64 248.4 313 49.5
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 7.2e-64 248.4 303 51.2
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 2.1e-63 246.9 304 50.0
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 6.1e-63 245.4 258 58.5
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 1.0e-62 244.6 296 49.3
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 5.2e-62 242.3 305 49.5
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 2.0e-61 240.4 318 49.1
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 9.1e-59 231.5 197 64.0
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 1.2e-58 231.1 314 45.9
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.0e-58 230.3 281 46.3
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.3e-57 227.6 318 47.2
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 5.0e-57 225.7 306 47.4
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 6.5e-57 225.3 306 47.4
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 2.2e-52 210.3 277 45.1
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.8e-47 193.4 283 43.8
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 3.6e-47 193.0 283 43.8
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 7.5e-37 158.7 143 62.9
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 6.4e-36 155.6 240 42.5
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 3.5e-34 149.8 161 56.5
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 2.1e-31 140.6 282 37.6
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 1.7e-28 131.0 118 61.9
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 3.7e-28 129.8 178 46.6
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 3.5e-18 96.7 184 35.3
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 5.6e-16 89.4 126 43.7
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.1e-14 85.1 166 39.2
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 2.4e-11 73.9 102 45.1
Actinidia26538 Actinidia chinensis HOM05D006030 ORTHO05D007475 3.9e-09 66.6 94 43.6


User provided reference genes

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