Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 4.6e-138 494.6 255 100.0
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 1.1e-128 463.4 251 96.4
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 2.1e-106 389.4 250 80.4
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 2.2e-103 379.4 251 77.7
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 1.4e-102 376.7 250 77.2
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 7.0e-102 374.4 274 71.5
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.5e-101 373.2 274 71.2
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 3.6e-98 362.1 250 74.4
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 2.4e-94 349.4 250 73.6
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 3.8e-92 342.0 250 69.6
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 3.2e-91 339.0 251 68.1
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 8.0e-90 334.3 250 67.6
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 1.2e-88 330.5 251 66.5
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 7.5e-88 327.8 251 65.7
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 2.2e-87 326.2 249 66.7
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 2.2e-87 326.2 250 67.2
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 1.8e-86 323.2 249 66.3
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 3.1e-86 322.4 250 64.4
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 9.1e-86 320.9 250 65.6
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 1.6e-85 320.1 251 63.3
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 2.0e-85 319.7 250 65.2
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 4.5e-85 318.5 251 65.7
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 5.9e-85 318.2 251 64.9
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 1.1e-83 313.9 250 64.4
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.5e-83 313.5 250 63.6
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 1.9e-83 313.2 250 63.6
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 7.2e-83 311.2 250 62.8
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 9.4e-83 310.8 250 63.2
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 9.4e-83 310.8 245 62.9
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.2e-82 310.5 250 63.6
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 1.6e-82 310.1 250 63.6
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 2.7e-82 309.3 248 64.5
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 1.8e-81 306.6 250 61.6
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 2.3e-81 306.2 250 62.8
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 3.0e-81 305.8 250 60.4
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 6.8e-81 304.7 250 62.4
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 3.4e-80 302.4 250 62.4
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 3.4e-80 302.4 251 63.3
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 3.4e-80 302.4 251 62.5
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 1.7e-79 300.1 250 62.4
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 1.7e-79 300.1 250 60.8
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 3.7e-79 298.9 250 62.0
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 4.8e-79 298.5 250 62.0
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 6.3e-79 298.1 250 62.0
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 1.1e-78 297.4 223 70.9
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 1.4e-78 297.0 251 62.5
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 2.4e-78 296.2 250 60.4
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 5.4e-78 295.0 250 61.6
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 9.1e-78 294.3 250 60.4
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 9.1e-78 294.3 250 59.2
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 1.2e-77 293.9 250 60.4
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 3.5e-77 292.4 250 61.2
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 3.5e-77 292.4 251 61.4
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 4.5e-77 292.0 249 59.4
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 4.5e-77 292.0 249 62.2
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 1.0e-76 290.8 249 59.4
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 1.3e-76 290.4 252 60.3
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 1.3e-76 290.4 252 60.3
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 1.3e-76 290.4 253 60.5
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 1.7e-76 290.0 250 60.4
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 1.1e-75 287.3 250 59.2
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 3.3e-75 285.8 249 60.6
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 7.2e-75 284.6 372 46.0
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 1.2e-74 283.9 280 56.8
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 6.1e-74 281.6 250 57.2
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 1.4e-73 280.4 250 57.2
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.3e-73 279.6 250 59.6
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 2.6e-72 276.2 249 57.0
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 2.6e-72 276.2 296 52.7
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 9.8e-72 274.2 249 56.2
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 4.9e-71 271.9 251 55.4
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 1.1e-70 270.8 229 61.6
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 2.7e-69 266.2 249 55.4
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 1.7e-68 263.5 251 53.8
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 1.7e-68 263.5 251 53.8
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 2.9e-68 262.7 250 55.2
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 3.9e-68 262.3 249 55.0
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 6.6e-68 261.5 251 53.8
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 6.6e-68 261.5 251 53.8
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 1.2e-66 257.3 250 53.2
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 1.4e-65 253.8 251 53.0
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 2.9e-63 246.1 251 51.0
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 4.1e-62 242.3 250 50.4
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 2.7e-61 239.6 251 48.6
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 3.5e-61 239.2 251 50.2
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 3.5e-61 239.2 247 51.8
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 1.0e-60 237.7 251 49.0
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 1.3e-60 237.3 247 49.8
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 3.0e-60 236.1 248 50.4
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 3.9e-60 235.7 251 49.4
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 8.6e-60 234.6 233 52.8
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 2.5e-59 233.0 251 49.4
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 2.6e-56 223.0 254 47.6
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 9.8e-56 221.1 212 56.1
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 1.3e-55 220.7 170 62.4
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 7.1e-54 214.9 222 56.3
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 1.0e-52 211.1 153 73.2
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 5.1e-52 208.8 257 47.9
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 3.3e-51 206.1 174 62.6
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 2.8e-50 203.0 246 44.3
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 9.9e-48 194.5 250 43.6
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 2.8e-34 149.8 182 50.5
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 5.8e-32 142.1 112 63.4
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 2.2e-31 140.2 242 33.9
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 4.6e-29 132.5 254 29.1
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 2.7e-13 80.1 52 71.2
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 6.3e-10 68.9 62 54.8


User provided reference genes

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