Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0681F.1_g202440 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 7.3e-71 270.4 132 100.0
Hma1.2p1_0633F.1_g192550 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 3.7e-22 108.6 144 45.8
Cc02_g25820 Coffea canephora HOM05D001579 ORTHO05D003470 8.0e-17 90.9 140 39.3
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 8.0e-17 90.9 140 40.7
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 2.3e-16 89.4 140 42.1
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 3.0e-16 89.0 141 41.1
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 3.9e-16 88.6 139 40.3
Ah.12g056180 Amaranthus hybridus HOM05D001579 ORTHO05D003470 5.2e-16 88.2 141 39.0
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 5.2e-16 88.2 141 40.4
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 6.7e-16 87.8 140 42.1
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 8.8e-16 87.4 121 43.0
Lalb_Chr03g0025691 Lupinus albus HOM05D001579 ORTHO05D003470 1.1e-15 87.0 141 40.4
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 1.5e-15 86.7 139 40.3
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 1.5e-15 86.7 140 40.7
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 2.6e-15 85.9 140 41.4
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 2.6e-15 85.9 140 41.4
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 3.3e-15 85.5 140 41.4
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 3.3e-15 85.5 142 39.4
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 3.3e-15 85.5 140 41.4
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 5.7e-15 84.7 141 39.0
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 7.4e-15 84.3 141 39.7
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 7.4e-15 84.3 139 41.0
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 7.4e-15 84.3 139 40.3
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 9.7e-15 84.0 142 38.7
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 1.3e-14 83.6 140 40.0
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 1.7e-14 83.2 140 39.3
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 1.7e-14 83.2 140 39.3
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 1.7e-14 83.2 140 40.0
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 2.2e-14 82.8 140 40.7
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 2.8e-14 82.4 140 38.6
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 2.8e-14 82.4 140 39.3
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 3.7e-14 82.0 141 39.7
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 3.7e-14 82.0 141 39.0
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 4.8e-14 81.6 140 38.6
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 6.3e-14 81.3 152 37.5
Rhsim05G0074300 Rhododendron simsii HOM05D001579 ORTHO05D003470 6.3e-14 81.3 142 38.0
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 6.3e-14 81.3 140 38.6
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 8.2e-14 80.9 154 38.3
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 1.8e-13 79.7 141 38.3
arahy.Tifrunner.gnm1.ann1.IB6GCN Arachis hypogaea HOM05D001579 ORTHO05D003470 1.8e-13 79.7 141 38.3
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.8e-13 79.7 140 37.1
Aa31LG3G6010 Aethionema arabicum HOM05D001579 ORTHO05D003470 2.4e-13 79.3 151 37.1
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 3.1e-13 79.0 140 37.1
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 5.3e-13 78.2 139 38.8
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 7.0e-13 77.8 140 38.6
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 7.0e-13 77.8 41 87.8
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 7.0e-13 77.8 140 36.4
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 7.0e-13 77.8 140 36.4
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 9.1e-13 77.4 142 38.7
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 1.2e-12 77.0 140 36.4
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.2e-12 77.0 140 36.4
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 1.2e-12 77.0 139 38.1
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 1.2e-12 77.0 140 35.7
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 1.2e-12 77.0 140 35.7
AL7G31990 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 2.6e-12 75.9 144 36.8
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 3.5e-12 75.5 140 35.7
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 4.5e-12 75.1 141 38.3
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 1.0e-11 73.9 152 32.2
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 2.9e-11 72.4 141 37.6
DCAR_006199 Daucus carota HOM05D001579 ORTHO05D003470 3.8e-11 72.0 144 37.5
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 3.8e-11 72.0 142 35.9
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 5.0e-11 71.6 141 36.9
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 6.5e-11 71.2 145 33.1
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 1.1e-10 70.5 141 34.0
FAN20G1104 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.9e-10 69.7 148 33.8
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 2.5e-10 69.3 148 33.1
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.5e-10 69.3 148 33.1
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.5e-10 69.3 148 35.1
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.5e-10 69.3 148 33.1
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 3.2e-10 68.9 41 75.6
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 5.5e-10 68.2 143 32.9
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 5.5e-10 68.2 148 34.5
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 5.5e-10 68.2 148 33.1
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 7.2e-10 67.8 148 33.1
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 7.2e-10 67.8 148 33.1
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 9.4e-10 67.4 41 73.2
vmacro11112 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 1.6e-09 66.6 41 73.2
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 2.1e-09 66.2 41 73.2
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 2.1e-09 66.2 133 36.8
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 2.1e-09 66.2 41 73.2
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 2.7e-09 65.9 41 70.7
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 2.7e-09 65.9 143 33.6
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 3.6e-09 65.5 41 73.2
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 3.6e-09 65.5 41 70.7
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 4.7e-09 65.1 41 70.7
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 6.1e-09 64.7 149 31.5
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 6.1e-09 64.7 142 35.9
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 6.1e-09 64.7 148 31.8
SEGI_12575 Sequoiadendron giganteum HOM05D001579 ORTHO05D003470 6.1e-09 64.7 41 68.3
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 6.1e-09 64.7 41 70.7
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 8.0e-09 64.3 148 33.1
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 8.0e-09 64.3 41 73.2
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 8.0e-09 64.3 41 70.7
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 1.8e-08 63.2 41 70.7
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 1.8e-08 63.2 41 70.7
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 1.8e-08 63.2 41 68.3
CDE06G0853 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 2.3e-08 62.8 41 68.3
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 2.3e-08 62.8 41 70.7
Lj7A253G28 Lonicera japonica HOM05D001579 ORTHO05D003470 3.0e-08 62.4 181 29.3
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 3.0e-08 62.4 41 68.3
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 3.0e-08 62.4 41 68.3
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 4.0e-08 62.0 41 68.3
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 4.0e-08 62.0 42 71.4
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 5.2e-08 61.6 42 69.0
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 5.2e-08 61.6 41 65.9
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 6.7e-08 61.2 42 66.7
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 6.7e-08 61.2 42 69.0
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 6.7e-08 61.2 42 66.7
Lj7A248G13 Lonicera japonica HOM05D001579 ORTHO05D003470 6.7e-08 61.2 40 67.5
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 6.7e-08 61.2 41 68.3
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 6.7e-08 61.2 41 65.9
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 6.7e-08 61.2 138 31.2
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 8.8e-08 60.8 42 64.3
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 8.8e-08 60.8 141 31.9
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 8.8e-08 60.8 142 32.4
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 8.8e-08 60.8 42 69.0
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 8.8e-08 60.8 142 31.0
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 8.8e-08 60.8 41 65.9
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 1.2e-07 60.5 41 63.4
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 1.2e-07 60.5 41 65.9
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 1.5e-07 60.1 140 30.7
CARHR112750 Cardamine hirsuta HOM05D001579 ORTHO05D003470 1.5e-07 60.1 71 49.3
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 1.5e-07 60.1 41 65.9
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 1.5e-07 60.1 31 83.9
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 2.0e-07 59.7 41 63.4
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 2.0e-07 59.7 41 63.4
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 2.6e-07 59.3 41 63.4
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 2.6e-07 59.3 42 61.9
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 2.6e-07 59.3 41 63.4
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 3.3e-07 58.9 142 33.8
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 3.3e-07 58.9 142 33.8
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 4.4e-07 58.5 142 31.7
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 4.4e-07 58.5 41 63.4
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 4.4e-07 58.5 41 63.4
BcaC03g13561 Brassica carinata HOM05D001579 ORTHO05D017611 7.5e-07 57.8 141 33.3
Hund11566 Selenicereus undatus HOM05D001579 ORTHO05D003470 7.5e-07 57.8 33 75.8
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 9.7e-07 57.4 142 33.8
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 9.7e-07 57.4 140 29.3
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 1.3e-06 57.0 143 32.9
C09p46380 Brassica napus HOM05D001579 ORTHO05D003470 1.3e-06 57.0 142 32.4
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 1.3e-06 57.0 143 33.6
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.7e-06 56.6 41 61.0
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 2.8e-06 55.8 31 74.2
RcHm_v2.0_Chr6g0259031 Rosa chinensis HOM05D001579 ORTHO05D003470 2.8e-06 55.8 41 61.0
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 4.8e-06 55.1 34 73.5


User provided reference genes

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