Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 3.0e-65 251.9 148 100.0
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 6.5e-60 234.2 145 97.2
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 8.0e-50 200.7 148 75.7
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 4.0e-49 198.4 149 77.2
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.5e-48 196.4 148 76.4
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 4.4e-48 194.9 149 78.5
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 5.7e-48 194.5 146 78.1
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 5.7e-48 194.5 146 78.1
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.1e-46 190.3 147 78.2
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.8e-46 189.5 149 79.9
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 2.4e-46 189.1 149 77.2
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 5.4e-46 188.0 145 77.2
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 7.0e-46 187.6 149 76.5
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 7.0e-46 187.6 149 77.2
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 9.1e-46 187.2 149 75.8
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.2e-45 186.8 149 71.8
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.6e-45 186.4 143 79.0
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 3.5e-45 185.3 143 78.3
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.5e-45 184.9 149 73.8
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 5.9e-45 184.5 145 74.5
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 7.7e-45 184.1 149 77.9
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.3e-44 183.3 149 75.8
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 1.7e-44 183.0 146 74.0
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 8.6e-44 180.6 150 72.7
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.1e-43 180.3 146 71.9
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.1e-43 180.3 147 71.4
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 3.3e-43 178.7 149 73.8
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 3.3e-43 178.7 149 67.8
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 4.2e-43 178.3 150 71.3
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 4.2e-43 178.3 152 73.0
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 4.2e-43 178.3 150 76.0
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 9.5e-43 177.2 144 77.1
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 9.5e-43 177.2 147 75.5
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 9.5e-43 177.2 147 75.5
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.2e-42 176.8 148 75.0
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.2e-42 176.8 147 75.5
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.2e-42 176.8 146 71.2
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.6e-42 176.4 146 71.9
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 4.7e-42 174.9 148 70.3
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 4.7e-42 174.9 148 70.3
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 4.7e-42 174.9 150 72.0
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 6.1e-42 174.5 148 70.3
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.0e-41 173.7 149 72.5
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.0e-41 173.7 149 72.5
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.4e-41 173.3 149 69.1
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.4e-41 173.3 136 71.3
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.8e-41 172.9 149 73.2
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.8e-41 172.9 144 74.3
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 2.3e-41 172.6 149 70.5
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 2.3e-41 172.6 149 71.8
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.0e-41 172.2 150 74.0
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 4.0e-41 171.8 146 73.3
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 5.2e-41 171.4 149 74.5
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 6.8e-41 171.0 174 63.2
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 6.8e-41 171.0 149 72.5
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 8.9e-41 170.6 150 74.7
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.5e-40 169.9 144 69.4
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.6e-40 169.1 151 72.2
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.4e-40 168.7 143 72.0
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 9.8e-40 167.2 142 69.7
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.7e-39 166.4 142 71.8
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 2.2e-39 166.0 137 76.6
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 2.2e-39 166.0 142 69.0
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 2.2e-39 166.0 142 69.0
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 3.7e-39 165.2 147 70.7
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 4.9e-39 164.9 150 69.3
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 6.3e-39 164.5 143 69.2
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.1e-38 163.7 141 70.9
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.4e-38 163.3 148 72.3
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 4.1e-38 161.8 138 71.7
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 7.0e-38 161.0 147 61.9
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 7.0e-38 161.0 146 69.2
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 9.2e-38 160.6 146 70.5
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.2e-37 160.2 144 64.6
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 1.2e-37 160.2 146 70.5
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.6e-37 159.8 149 69.8
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.7e-37 159.1 146 69.2
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.7e-37 159.1 141 64.5
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 3.5e-37 158.7 140 72.1
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.5e-37 158.7 149 69.1
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 3.5e-37 158.7 110 71.8
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 3.5e-37 158.7 143 69.2
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 4.5e-37 158.3 139 74.1
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 7.8e-37 157.5 139 71.9
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.0e-36 157.1 139 73.4
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 1.0e-36 157.1 138 71.0
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 1.7e-36 156.4 139 71.2
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.7e-36 156.4 139 71.2
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 1.7e-36 156.4 139 71.2
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 2.9e-36 155.6 136 74.3
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 3.8e-36 155.2 147 67.3
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 8.6e-36 154.1 139 69.8
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 8.6e-36 154.1 139 69.8
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 8.6e-36 154.1 110 70.9
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 8.6e-36 154.1 146 67.1
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.1e-35 153.7 110 70.0
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.5e-35 153.3 137 63.5
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.5e-35 153.3 141 70.2
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 2.5e-35 152.5 139 69.1
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.3e-35 151.8 145 65.5
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 4.3e-35 151.8 146 66.4
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 5.6e-35 151.4 140 67.1
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 9.5e-35 150.6 146 64.4
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-34 150.2 139 69.1
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.7e-34 148.3 105 70.5
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 4.7e-34 148.3 141 67.4
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 6.1e-34 147.9 94 80.9
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 8.0e-34 147.5 140 67.9
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 8.0e-34 147.5 144 64.6
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.0e-33 147.1 144 68.1
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 4.0e-33 145.2 100 76.0
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 5.2e-33 144.8 182 51.1
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 6.8e-33 144.4 138 68.1
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 8.9e-33 144.1 96 75.0
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 8.9e-33 144.1 137 66.4
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 3.4e-32 142.1 141 63.1
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 3.4e-32 142.1 94 75.5
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 4.4e-32 141.7 240 43.8
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 9.8e-32 140.6 145 64.8
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 6.4e-31 137.9 153 60.8
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 7.8e-29 131.0 119 73.9
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.3e-28 129.4 141 58.2
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.8e-26 122.5 144 54.9
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.1e-25 120.6 112 67.9
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.4e-25 120.2 234 44.0
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 1.5e-24 116.7 118 66.1
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.4e-24 115.2 227 43.2
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 8.3e-23 110.9 136 55.1
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 8.3e-23 110.9 149 44.3
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 1.2e-21 107.1 132 50.0
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.7e-20 103.2 61 78.7
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 2.3e-20 102.8 103 71.8
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 6.4e-15 84.7 68 64.7
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.1e-13 79.7 82 63.4
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 3.6e-10 68.9 121 40.5
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 2.2e-07 59.7 34 73.5


User provided reference genes

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