Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 7.0e-123 444.1 249 100.0
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 5.8e-93 344.7 251 77.7
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 6.4e-92 341.3 251 78.1
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.1e-91 340.5 248 79.0
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 2.4e-91 339.3 250 77.2
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.4e-91 339.3 248 78.6
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 7.0e-91 337.8 250 76.8
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 9.2e-91 337.4 251 76.5
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 3.5e-90 335.5 247 76.5
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 3.5e-90 335.5 249 77.1
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 2.3e-89 332.8 250 74.8
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 3.0e-89 332.4 254 75.2
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 5.0e-89 331.6 249 73.5
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 6.6e-89 331.3 260 73.5
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 8.6e-89 330.9 251 74.9
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.9e-88 329.7 248 76.2
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 9.5e-88 327.4 252 75.8
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.6e-87 326.6 249 76.7
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.1e-87 326.2 249 75.1
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 2.1e-87 326.2 252 77.0
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 2.8e-87 325.9 252 75.8
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 3.6e-87 325.5 251 75.3
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 2.3e-86 322.8 251 72.1
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 4.0e-86 322.0 251 72.5
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 4.0e-86 322.0 247 74.5
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 6.8e-86 321.2 251 75.3
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 8.9e-86 320.9 243 77.8
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 8.9e-86 320.9 244 78.7
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.2e-85 320.5 249 73.5
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 2.0e-85 319.7 250 72.8
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.0e-85 319.7 249 74.7
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.6e-85 319.3 247 75.3
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.8e-85 318.2 250 73.2
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 9.9e-85 317.4 253 71.9
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.3e-84 317.0 253 73.5
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.9e-84 315.8 250 73.2
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 8.3e-84 314.3 252 76.6
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 8.3e-84 314.3 247 72.9
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 8.3e-84 314.3 247 73.3
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 1.4e-83 313.5 252 71.0
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.9e-83 313.2 251 71.3
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 2.4e-83 312.8 249 69.1
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 2.4e-83 312.8 241 71.4
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 4.1e-83 312.0 251 72.9
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 4.1e-83 312.0 242 75.2
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 4.1e-83 312.0 251 71.3
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 5.4e-83 311.6 252 71.8
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 5.4e-83 311.6 249 71.5
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 7.1e-83 311.2 253 70.4
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 9.2e-83 310.8 249 73.5
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 9.2e-83 310.8 251 72.1
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.6e-82 310.1 246 72.4
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 2.1e-82 309.7 238 76.9
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 2.1e-82 309.7 248 72.2
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 3.5e-82 308.9 250 71.2
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 4.6e-82 308.5 251 72.1
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 6.0e-82 308.1 248 72.2
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.3e-81 307.0 249 71.1
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 3.9e-81 305.4 244 73.0
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 3.9e-81 305.4 249 72.3
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 5.1e-81 305.1 242 73.1
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 5.1e-81 305.1 249 69.5
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 6.6e-81 304.7 244 72.5
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.1e-80 303.9 249 69.5
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.1e-80 303.9 250 70.0
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.5e-80 303.5 249 69.5
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 5.6e-80 301.6 249 69.9
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.2e-79 300.4 249 69.9
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.6e-79 300.1 253 70.8
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.1e-79 299.7 243 69.1
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.1e-79 299.7 242 71.1
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 2.1e-79 299.7 249 69.1
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 2.1e-79 299.7 252 72.6
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 6.2e-79 298.1 241 72.2
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 8.1e-79 297.7 247 68.4
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 1.4e-78 297.0 202 76.7
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.8e-78 296.6 247 70.4
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.8e-78 296.6 243 70.8
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 3.1e-78 295.8 245 69.0
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 6.8e-78 294.7 194 78.9
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 8.9e-78 294.3 293 62.5
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-77 293.9 243 70.8
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.2e-77 293.9 269 66.5
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 1.5e-77 293.5 209 72.2
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 2.6e-77 292.7 235 71.9
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 5.8e-77 291.6 236 71.2
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 9.9e-77 290.8 236 71.6
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.2e-76 289.7 246 67.9
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.9e-76 288.5 253 68.8
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 8.4e-76 287.7 242 69.8
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 2.4e-75 286.2 253 68.8
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 5.4e-75 285.0 345 53.9
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 1.2e-74 283.9 245 69.8
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 2.1e-74 283.1 245 67.8
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 6.0e-74 281.6 247 68.0
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 1.0e-73 280.8 248 67.3
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.3e-73 280.4 257 65.4
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.3e-73 280.4 242 68.6
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 3.0e-73 279.3 242 66.5
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 6.6e-73 278.1 247 67.2
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 8.7e-73 277.7 242 68.2
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 8.7e-73 277.7 274 63.1
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.5e-72 276.2 247 67.2
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.8e-70 270.0 227 65.6
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.6e-69 266.2 251 62.9
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 3.4e-69 265.8 249 65.1
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 7.6e-69 264.6 249 64.7
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 7.1e-67 258.1 252 61.1
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 5.6e-64 248.4 242 62.8
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 9.6e-64 247.7 245 63.3
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.1e-63 246.5 332 51.2
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.0e-62 242.3 243 56.8
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 9.0e-62 241.1 249 57.8
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 9.9e-61 237.7 287 53.3
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.9e-60 236.1 247 57.5
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 6.4e-60 235.0 145 97.2
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 5.4e-59 231.9 246 59.8
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.9e-56 223.4 157 73.9
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 1.1e-54 217.6 220 58.2
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.8e-53 211.8 246 52.8
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 1.3e-52 210.7 246 56.9
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 3.2e-51 206.1 241 54.8
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.2e-51 206.1 147 74.8
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 3.3e-48 196.1 136 75.7
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.2e-45 187.6 233 45.5
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 7.1e-43 178.3 127 71.7
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 9.3e-43 177.9 165 64.8
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 1.3e-41 174.1 142 64.8
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 2.8e-39 166.4 255 42.0
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 4.8e-39 165.6 240 44.2
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.1e-35 154.5 133 63.2
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 9.4e-35 151.4 198 56.1
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 3.1e-30 136.3 211 38.9
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.4e-29 132.9 339 39.2
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 7.2e-27 125.2 111 71.2
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 7.2e-27 125.2 115 75.7
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 4.7e-26 122.5 227 36.1
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 3.9e-25 119.4 217 36.4
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 2.4e-22 110.2 92 62.0
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 4.1e-22 109.4 72 77.8
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.5e-21 105.9 63 77.8
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 5.5e-19 99.0 79 63.3
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 6.7e-17 92.0 79 60.8
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.6e-10 70.9 78 62.8
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 3.0e-09 66.6 161 31.7
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 5.7e-08 62.4 38 76.3
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.7e-07 59.7 34 73.5
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.4e-06 57.8 63 49.2
AagrBONN_evm.TU.Sc2ySwM_362.486 Anthoceros agrestis HOM05D025310 ORTHO05D023473 9.1e-06 55.1 137 33.6


User provided reference genes

Program Settings