Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0679F.1_g202260 Hydrangea macrophylla HOM05D000141 ORTHO05D001968 2.4e-60 235.3 123 100.0
Hma1.2p1_1682F.1_g297330 Hydrangea macrophylla HOM05D000141 ORTHO05D001968 1.9e-41 172.6 139 69.8
Dinv18940 Davidia involucrata HOM05D000141 ORTHO05D001968 1.6e-27 126.3 136 53.7
Cfa016410 Carpinus fangiana HOM05D000141 ORTHO05D001968 1.8e-26 122.9 138 50.0
CiPaw.09G080400 Carya illinoinensis HOM05D000141 ORTHO05D001968 2.3e-26 122.5 138 50.7
CiPaw.10G066600 Carya illinoinensis HOM05D000141 ORTHO05D001968 2.3e-26 122.5 138 50.7
Rhsim02G0115000 Rhododendron simsii HOM05D000141 ORTHO05D001968 3.0e-26 122.1 136 52.9
Haze_06688 Corylus avellana HOM05D000141 ORTHO05D001968 3.9e-26 121.7 138 50.0
QL05p077145 Quercus lobata HOM05D000141 ORTHO05D001968 5.1e-26 121.3 138 50.0
QL93p0073_1235 Quercus lobata HOM05D000141 ORTHO05D001968 6.7e-26 120.9 138 50.0
Manes.16G017100 Manihot esculenta HOM05D000141 ORTHO05D001968 5.7e-25 117.9 128 53.9
Hund23534 Selenicereus undatus HOM05D000141 ORTHO05D001968 1.6e-24 116.3 134 53.0
COL.COLO4_31687 Corchorus olitorius HOM05D000141 ORTHO05D001968 1.1e-23 113.6 134 50.0
Ah.06g183110 Amaranthus hybridus HOM05D000141 ORTHO05D001968 1.2e-22 110.2 138 43.5
Glyma.08G062500 Glycine max HOM05D000141 ORTHO05D001968 3.8e-21 105.1 138 45.7
DCAR_024924 Daucus carota HOM05D000141 ORTHO05D001968 3.2e-20 102.1 136 47.8
Dinv17848 Davidia involucrata HOM05D000141 ORTHO05D001968 7.2e-20 100.9 99 57.6
TWI38G1655 Tripterygium wilfordii HOM05D000141 ORTHO05D001968 2.1e-19 99.4 127 46.5
Actinidia05130 Actinidia chinensis HOM05D000141 ORTHO05D001968 3.6e-19 98.6 129 45.7
Glyma.07G186700 Glycine max HOM05D000141 ORTHO05D001968 3.6e-19 98.6 137 43.1
Hund23319 Selenicereus undatus HOM05D000141 ORTHO05D001968 6.1e-19 97.8 138 42.8
VMungo0251G0648 Vigna mungo HOM05D000141 ORTHO05D001968 7.9e-19 97.4 137 42.3
PGSC0003DMG400021807 Solanum tuberosum HOM05D000141 ORTHO05D001968 1.0e-18 97.1 137 43.1
HanXRQChr03g0076311 Helianthus annuus HOM05D000141 ORTHO05D001968 1.8e-18 96.3 136 41.2
Nitab4.5_0000749g0030 Nicotiana tabacum HOM05D000141 ORTHO05D001968 1.8e-18 96.3 129 44.2
HPP92_016541 Vanilla planifolia HOM05D000141 ORTHO05D001968 1.8e-18 96.3 118 41.5
CSS0038905 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001968 2.3e-18 95.9 99 56.6
Cpa.g.sc81.9 Carica papaya HOM05D000141 ORTHO05D001968 2.3e-18 95.9 128 48.4
Solyc12g005250.2 Solanum lycopersicum HOM05D000141 ORTHO05D001968 2.3e-18 95.9 136 43.4
Sopen12g001240 Solanum pennellii HOM05D000141 ORTHO05D001968 3.0e-18 95.5 136 42.6
CSS0042879 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001968 3.9e-18 95.1 99 56.6
CDE02G2444 Ceratophyllum demersum HOM05D000141 ORTHO05D001968 3.9e-18 95.1 111 48.6
Sc03g0009160 Simmondsia chinensis HOM05D000141 ORTHO05D001968 5.1e-18 94.7 129 43.4
Actinidia09956 Actinidia chinensis HOM05D000141 ORTHO05D001968 1.1e-17 93.6 138 39.9
Hund02142 Selenicereus undatus HOM05D000141 ORTHO05D001968 2.5e-17 92.4 138 42.0
TPR.G32663 Trifolium pratense HOM05D000141 ORTHO05D001968 3.3e-17 92.0 137 40.9
VMungo0331G1767 Vigna mungo HOM05D000141 ORTHO05D001968 3.3e-17 92.0 137 40.1
Zm00001eb069600 Zea mays HOM05D000141 ORTHO05D001968 3.3e-17 92.0 134 41.0
CANSAT56G1430 Cannabis sativa HOM05D000141 ORTHO05D001968 4.3e-17 91.7 138 42.0
HanXRQChr11g0328001 Helianthus annuus HOM05D000141 ORTHO05D001968 4.3e-17 91.7 138 40.6
Lj1C1222T7 Lonicera japonica HOM05D000141 ORTHO05D001968 4.3e-17 91.7 136 44.9
Peaxi162Scf00000g00841 Petunia axillaris HOM05D000141 ORTHO05D001968 9.7e-17 90.5 137 41.6
Lalb_Chr18g0060111 Lupinus albus HOM05D000141 ORTHO05D001968 1.3e-16 90.1 137 40.9
Phvul.006G196400 Phaseolus vulgaris HOM05D000141 ORTHO05D001968 1.7e-16 89.7 137 38.7
CAN.G262.20 Capsicum annuum HOM05D000141 ORTHO05D001968 2.8e-16 89.0 137 39.4
CDE05G0461 Ceratophyllum demersum HOM05D000141 ORTHO05D001968 2.8e-16 89.0 112 46.4
Dinv03943 Davidia involucrata HOM05D000141 ORTHO05D001968 2.8e-16 89.0 136 39.7
Duzib170G0721 Durio zibethinus HOM05D000141 ORTHO05D001968 2.8e-16 89.0 123 44.7
vmacro15840 Vaccinium macrocarpon HOM05D000141 ORTHO05D001968 2.8e-16 89.0 93 54.8
HPP92_011128 Vanilla planifolia HOM05D000141 ORTHO05D001968 3.7e-16 88.6 135 37.8
Eucgr.F03419 Eucalyptus grandis HOM05D000141 ORTHO05D001968 8.2e-16 87.4 136 41.2
HanXRQChr11g0333041 Helianthus annuus HOM05D000141 ORTHO05D001968 1.1e-15 87.0 136 37.5
Lalb_Chr16g0383241 Lupinus albus HOM05D000141 ORTHO05D001968 1.1e-15 87.0 137 42.3
Lj4g0020235 Lotus japonicus HOM05D000141 ORTHO05D001968 1.4e-15 86.7 137 40.9
ATR1088G030 Amborella trichopoda HOM05D000141 ORTHO05D001968 4.1e-15 85.1 136 38.2
Nitab4.5_0000092g0080 Nicotiana tabacum HOM05D000141 ORTHO05D001968 4.1e-15 85.1 131 40.5
MBI02_g29712_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 6.9e-15 84.3 93 52.7
MBI18_g25922_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 5.9e-14 81.3 96 52.1
MBI18_g28070_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 5.9e-14 81.3 96 52.1
HanXRQChr13g0407651 Helianthus annuus HOM05D000141 ORTHO05D001968 7.7e-14 80.9 107 42.1
Os07g0105700 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D001968 7.7e-14 80.9 134 35.1
Gohir.D01G060300 Gossypium hirsutum HOM05D000141 ORTHO05D001968 1.3e-13 80.1 123 42.3
Gorai.002G081700 Gossypium raimondii HOM05D000141 ORTHO05D001968 1.3e-13 80.1 123 42.3
HanXRQChr15g0495691 Helianthus annuus HOM05D000141 ORTHO05D001968 1.3e-13 80.1 129 37.2
THA.LOC104813408 Tarenaya hassleriana HOM05D000141 ORTHO05D001968 1.7e-13 79.7 118 39.0
Duzib213G0308 Durio zibethinus HOM05D000141 ORTHO05D001968 2.2e-13 79.3 118 43.2
Gohir.A01G073700 Gossypium hirsutum HOM05D000141 ORTHO05D001968 2.2e-13 79.3 118 43.2
Ciclev10014313m.g Citrus clementina HOM05D000141 ORTHO05D001968 2.9e-13 79.0 138 40.6
PGR004G2431 Punica granatum HOM05D000141 ORTHO05D001968 2.9e-13 79.0 134 39.6
Atru.chr10.2105 Acer truncatum HOM05D000141 ORTHO05D001968 3.8e-13 78.6 117 43.6
BcaB05g23695 Brassica carinata HOM05D000141 ORTHO05D001968 3.8e-13 78.6 126 42.9
Aqoxy1G03803 Aquilegia oxysepala HOM05D000141 ORTHO05D001968 5.0e-13 78.2 104 47.1
Hund21322 Selenicereus undatus HOM05D000141 ORTHO05D001968 5.0e-13 78.2 122 43.4
BraA10t43292Z Brassica rapa HOM05D000141 ORTHO05D001968 1.1e-12 77.0 125 36.8
EL10Ac4g07989 Beta vulgaris HOM05D000141 ORTHO05D001968 1.4e-12 76.6 99 46.5
ECA236G1483 Erigeron canadensis HOM05D000141 ORTHO05D001968 1.4e-12 76.6 136 35.3
Eucgr.E03592 Eucalyptus grandis HOM05D000141 ORTHO05D001968 1.4e-12 76.6 98 50.0
SGA_v2.0_scaffold9G05022 Striga asiatica HOM05D000141 ORTHO05D001968 1.4e-12 76.6 93 47.3
AUR62015634 Chenopodium quinoa HOM05D000141 ORTHO05D001968 1.9e-12 76.3 136 36.8
ClCG05G014830 Citrullus lanatus HOM05D000141 ORTHO05D001968 3.2e-12 75.5 138 34.8
Gohir.D05G364900 Gossypium hirsutum HOM05D000141 ORTHO05D001968 3.2e-12 75.5 125 40.0
Gorai.009G427400 Gossypium raimondii HOM05D000141 ORTHO05D001968 3.2e-12 75.5 125 40.0
Oeu013858.2 Olea europaea HOM05D000141 ORTHO05D001968 3.2e-12 75.5 136 36.8
Oeu013860.1 Olea europaea HOM05D000141 ORTHO05D001968 3.2e-12 75.5 136 36.8
Sabra04G0017900 Salix brachista HOM05D000141 ORTHO05D001968 3.2e-12 75.5 77 54.5
Lsat_1_v5_gn_7_18201 Lactuca sativa HOM05D000141 ORTHO05D001968 5.5e-12 74.7 146 34.9
A10p11960 Brassica napus HOM05D000141 ORTHO05D001968 9.4e-12 73.9 125 35.2
C09p45070 Brassica napus HOM05D000141 ORTHO05D001968 9.4e-12 73.9 125 35.2
BolC9t57382H Brassica oleracea HOM05D000141 ORTHO05D001968 9.4e-12 73.9 125 35.2
MSTRG.12951 Avicennia marina HOM05D000141 ORTHO05D001968 1.2e-11 73.6 96 44.8
Thhalv10024503m.g Eutrema salsugineum HOM05D000141 ORTHO05D001968 1.6e-11 73.2 127 35.4
Gohir.A04G022500 Gossypium hirsutum HOM05D000141 ORTHO05D001968 1.6e-11 73.2 125 40.0
BraA01t01787Z Brassica rapa HOM05D000141 ORTHO05D001968 2.1e-11 72.8 127 34.6
Sabra16G0283000 Salix brachista HOM05D000141 ORTHO05D001968 2.1e-11 72.8 127 36.2
Glyma.15G063200 Glycine max HOM05D000141 ORTHO05D001968 2.7e-11 72.4 137 37.2
TWI39G1256 Tripterygium wilfordii HOM05D000141 ORTHO05D001968 3.6e-11 72.0 123 39.0
Carub.0008s1493 Capsella rubella HOM05D000141 ORTHO05D001968 4.7e-11 71.6 125 33.6
Glyma.13G251100 Glycine max HOM05D000141 ORTHO05D001968 4.7e-11 71.6 129 37.2
Oeu007616.1 Olea europaea HOM05D000141 ORTHO05D001968 4.7e-11 71.6 91 45.1
Sp6g16630 Schrenkiella parvula HOM05D000141 ORTHO05D001968 4.7e-11 71.6 125 32.8
C02p16790 Brassica napus HOM05D000141 ORTHO05D001968 6.1e-11 71.2 125 34.4
BolC2t07783H Brassica oleracea HOM05D000141 ORTHO05D001968 6.1e-11 71.2 125 34.4
Potri.011G031200 Populus trichocarpa HOM05D000141 ORTHO05D001968 1.4e-10 70.1 127 38.6
CsaV3_3G022850 Cucumis sativus L. HOM05D000141 ORTHO05D001968 1.8e-10 69.7 138 34.1
Haze_09592 Corylus avellana HOM05D000141 ORTHO05D001968 2.3e-10 69.3 120 39.2
GSVIVG01007336001 Vitis vinifera HOM05D000141 ORTHO05D001968 2.3e-10 69.3 71 54.9
Aa31LG5G10250 Aethionema arabicum HOM05D000141 ORTHO05D001968 3.0e-10 68.9 117 33.3
TWI38G0999 Tripterygium wilfordii HOM05D000141 ORTHO05D001968 3.9e-10 68.6 123 39.0
TPR.G13913 Trifolium pratense HOM05D000141 ORTHO05D001968 6.7e-10 67.8 129 36.4
Nn1g06957 Nelumbo nucifera HOM05D000141 ORTHO05D001968 1.1e-09 67.0 136 35.3
SGA_v2.0_scaffold34G13954 Striga asiatica HOM05D000141 ORTHO05D001968 1.5e-09 66.6 96 45.8
Lsat_1_v5_gn_7_108240 Lactuca sativa HOM05D000141 ORTHO05D001968 2.0e-09 66.2 128 32.8
Ca_01759_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001968 3.3e-09 65.5 111 39.6
MSTRG.6886 Avicennia marina HOM05D000141 ORTHO05D001968 5.7e-09 64.7 97 41.2
unitig_0.g2381 Utricularia gibba HOM05D000141 ORTHO05D001968 5.7e-09 64.7 91 41.8
A02p10110 Brassica napus HOM05D000141 ORTHO05D001968 7.4e-09 64.3 125 32.0
BraA02t06082Z Brassica rapa HOM05D000141 ORTHO05D001968 7.4e-09 64.3 125 32.0
Duzib192G0544 Durio zibethinus HOM05D000141 ORTHO05D001968 7.4e-09 64.3 71 53.5
Potri.004G031600 Populus trichocarpa HOM05D000141 ORTHO05D001968 7.4e-09 64.3 71 52.1
Hund21318 Selenicereus undatus HOM05D000141 ORTHO05D001968 9.7e-09 63.9 137 35.0
DCAR_012724 Daucus carota HOM05D000141 ORTHO05D001968 1.3e-08 63.5 98 40.8
Nn1g03714 Nelumbo nucifera HOM05D000141 ORTHO05D001968 1.3e-08 63.5 71 53.5
AagrBONN_evm.TU.Sc2ySwM_117.620 Anthoceros agrestis HOM05D000141 ORTHO05D001968 1.7e-08 63.2 136 33.8
Gohir.A10G016600 Gossypium hirsutum HOM05D000141 ORTHO05D001968 1.7e-08 63.2 71 52.1
Gohir.D10G016700 Gossypium hirsutum HOM05D000141 ORTHO05D001968 1.7e-08 63.2 71 52.1
Gorai.011G018600 Gossypium raimondii HOM05D000141 ORTHO05D001968 1.7e-08 63.2 71 52.1
MD05G1336300 Malus domestica HOM05D000141 ORTHO05D001968 1.7e-08 63.2 120 35.0
Sabra11G0018700 Salix brachista HOM05D000141 ORTHO05D001968 1.7e-08 63.2 71 53.5
Sabra11G0024600 Salix brachista HOM05D000141 ORTHO05D001968 1.7e-08 63.2 71 53.5
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 2.2e-08 62.8 129 32.6
Thecc.06G208600 Theobroma cacao HOM05D000141 ORTHO05D001968 3.7e-08 62.0 71 52.1
CAN.G337.155 Capsicum annuum HOM05D000141 ORTHO05D001968 6.3e-08 61.2 137 30.7
THA.LOC104812529 Tarenaya hassleriana HOM05D000141 ORTHO05D001968 6.3e-08 61.2 91 39.6
TPR.G25906 Trifolium pratense HOM05D000141 ORTHO05D001968 6.3e-08 61.2 120 35.8
AL8G30120 Arabidopsis lyrata HOM05D000141 ORTHO05D001968 8.2e-08 60.8 125 32.0
AUR62029238 Chenopodium quinoa HOM05D000141 ORTHO05D001968 1.1e-07 60.5 93 41.9
Ca_18842_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001968 3.1e-07 58.9 111 36.9
Duzib235G0067 Durio zibethinus HOM05D000141 ORTHO05D001968 3.1e-07 58.9 70 51.4
Gohir.D05G170600 Gossypium hirsutum HOM05D000141 ORTHO05D001968 3.1e-07 58.9 71 49.3
Gorai.009G175800 Gossypium raimondii HOM05D000141 ORTHO05D001968 3.1e-07 58.9 71 49.3
Glyma.06G266500 Glycine max HOM05D000141 ORTHO05D001968 4.1e-07 58.5 102 41.2
MD03G1212900 Malus domestica HOM05D000141 ORTHO05D001968 4.1e-07 58.5 102 38.2
Os04g0629700 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D001968 5.3e-07 58.2 134 31.3
CsaV3_1G011320 Cucumis sativus L. HOM05D000141 ORTHO05D001968 9.1e-07 57.4 138 31.9
Gohir.A05G167600 Gossypium hirsutum HOM05D000141 ORTHO05D001968 9.1e-07 57.4 71 47.9
Lalb_Chr01g0006161 Lupinus albus HOM05D000141 ORTHO05D001968 9.1e-07 57.4 112 38.4
Pp3c11_17850 Physcomitrium patens HOM05D000141 ORTHO05D001968 9.1e-07 57.4 135 31.9
Lalb_Chr19g0134711 Lupinus albus HOM05D000141 ORTHO05D001968 1.2e-06 57.0 89 36.0
Sc05g0008430 Simmondsia chinensis HOM05D000141 ORTHO05D001968 1.2e-06 57.0 71 46.5
TAR629G2130 Trochodendron aralioides HOM05D000141 ORTHO05D001968 1.2e-06 57.0 68 48.5
EL10Ac8g19916 Beta vulgaris HOM05D000141 ORTHO05D001968 1.5e-06 56.6 71 49.3
CSS0022316 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001968 1.5e-06 56.6 136 29.4
CSS0030624 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001968 1.5e-06 56.6 136 29.4
FvH4_3g21681 Fragaria vesca HOM05D000141 ORTHO05D001968 1.5e-06 56.6 138 30.4
FAN11G1924 Fragaria x ananassa HOM05D000141 ORTHO05D001968 1.5e-06 56.6 138 30.4
AUR62014616 Chenopodium quinoa HOM05D000141 ORTHO05D001968 2.0e-06 56.2 71 47.9
MELO3C002509.2 Cucumis melo HOM05D000141 ORTHO05D001968 2.0e-06 56.2 138 31.2
Lj1C862T8 Lonicera japonica HOM05D000141 ORTHO05D001968 2.0e-06 56.2 137 29.9
MD11G1228000 Malus domestica HOM05D000141 ORTHO05D001968 2.0e-06 56.2 110 36.4
Ah.09g237160 Amaranthus hybridus HOM05D000141 ORTHO05D001968 2.6e-06 55.8 69 46.4
ClCG03G005120 Citrullus lanatus HOM05D000141 ORTHO05D001968 2.6e-06 55.8 138 30.4
QL08p013805 Quercus lobata HOM05D000141 ORTHO05D001968 2.6e-06 55.8 134 32.8
Medtr4g081390 Medicago truncatula HOM05D000141 ORTHO05D001968 3.4e-06 55.5 111 36.0
Carub.0007s2016 Capsella rubella HOM05D000141 ORTHO05D001968 4.5e-06 55.1 71 47.9
Ciclev10007548m.g Citrus clementina HOM05D000141 ORTHO05D001968 4.5e-06 55.1 60 51.7
FAN21G3918 Fragaria x ananassa HOM05D000141 ORTHO05D001968 4.5e-06 55.1 138 29.7
FAN25G3139 Fragaria x ananassa HOM05D000141 ORTHO05D001968 4.5e-06 55.1 138 29.7
Glyma.12G136600 Glycine max HOM05D000141 ORTHO05D001968 4.5e-06 55.1 120 35.0
Sed0006809 Sechium edule HOM05D000141 ORTHO05D001968 5.9e-06 54.7 138 30.4
arahy.Tifrunner.gnm1.ann1.80N2SK Arachis hypogaea HOM05D000141 ORTHO05D001968 7.7e-06 54.3 120 34.2
Phvul.002G218100 Phaseolus vulgaris HOM05D000141 ORTHO05D001968 7.7e-06 54.3 128 28.9


User provided reference genes

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