Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 0.0e+00 1406.7 714 100.0
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1125.2 726 80.9
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1120.1 727 80.1
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1112.4 719 80.1
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1112.1 727 80.3
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1111.7 719 80.0
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1110.1 726 80.0
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1107.4 723 79.9
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1106.7 723 79.9
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1106.3 722 79.5
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1105.5 723 79.5
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1097.4 724 78.7
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1094.3 726 78.7
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1094.3 733 78.0
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1094.0 726 78.1
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1091.6 723 78.1
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1090.9 724 78.6
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1084.3 725 77.2
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1083.6 726 77.8
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1083.2 726 78.4
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1083.2 723 78.0
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1081.2 723 79.0
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1078.9 727 79.1
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1078.5 723 77.3
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1077.8 727 79.0
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1077.0 723 77.5
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 4.9e-312 1073.5 734 77.5
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 4.9e-312 1073.5 723 76.8
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 3.4e-311 1071.2 734 77.4
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 3.4e-311 1071.2 733 77.1
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 7.3e-311 1070.1 733 77.1
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 1.7e-310 1068.9 733 77.1
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 2.8e-310 1068.1 748 75.0
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 8.2e-310 1066.6 727 77.6
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 2.4e-309 1065.1 723 76.8
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 3.1e-309 1064.7 723 77.2
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 1.0e-307 1059.7 723 76.3
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 1.3e-307 1059.3 749 74.6
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 3.8e-307 1057.7 727 76.3
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 2.1e-305 1052.0 721 76.3
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 1.4e-304 1049.3 736 75.3
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 1.8e-304 1048.9 727 74.8
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 4.0e-304 1047.7 736 75.3
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 5.2e-304 1047.3 724 76.0
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 5.2e-304 1047.3 719 75.4
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 8.8e-304 1046.6 723 76.3
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 1.5e-303 1045.8 748 74.9
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 5.7e-303 1043.9 727 74.6
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 7.5e-303 1043.5 727 75.2
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 2.2e-302 1042.0 722 75.2
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 2.8e-302 1041.6 714 75.6
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 1.1e-301 1039.6 723 75.7
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 1.8e-301 1038.9 723 74.3
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 2.4e-301 1038.5 727 74.1
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 3.1e-301 1038.1 723 74.7
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 9.1e-301 1036.6 722 77.3
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 1.2e-300 1036.2 721 74.1
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 1.6e-300 1035.8 719 74.5
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 2.0e-300 1035.4 723 76.9
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 2.7e-300 1035.0 731 74.7
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 2.2e-299 1031.9 724 74.7
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 2.2e-299 1031.9 724 73.5
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 1.1e-298 1029.6 723 76.8
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 2.5e-298 1028.5 723 73.9
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 9.4e-298 1026.5 726 73.7
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 2.7e-297 1025.0 725 75.0
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 3.6e-297 1024.6 755 72.6
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 3.6e-297 1024.6 724 74.4
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 6.1e-297 1023.8 757 72.9
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 8.0e-297 1023.5 722 74.5
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 2.3e-296 1021.9 719 75.0
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 2.6e-295 1018.5 723 74.7
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 5.7e-295 1017.3 724 72.7
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 6.3e-294 1013.8 727 74.3
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 6.3e-294 1013.8 731 72.9
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 7.0e-293 1010.4 724 72.8
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 1.6e-292 1009.2 731 72.2
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 5.9e-292 1007.3 721 73.9
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 1.3e-291 1006.1 723 72.1
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 3.8e-291 1004.6 731 72.6
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 6.6e-291 1003.8 734 72.1
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 2.5e-290 1001.9 723 71.8
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 3.3e-290 1001.5 731 72.6
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 1.6e-289 999.2 723 71.6
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 2.1e-289 998.8 722 74.0
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 3.6e-289 998.0 722 72.6
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 2.3e-288 995.3 721 72.3
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 5.2e-288 994.2 723 72.2
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 2.0e-287 992.3 723 72.9
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 2.6e-287 991.9 723 72.1
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 7.5e-287 990.3 710 72.4
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 9.8e-287 989.9 725 72.6
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 2.8e-286 988.4 723 71.6
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 3.7e-286 988.0 726 73.3
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 3.1e-285 984.9 726 71.3
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 1.0e-283 979.9 731 71.7
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 1.3e-283 979.5 724 71.5
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 2.3e-283 978.8 715 72.7
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 8.6e-283 976.9 725 71.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 2.0e-279 965.7 722 71.7
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 9.8e-279 963.4 726 70.7
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 6.4e-278 960.7 725 70.9
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 4.1e-277 958.0 725 70.8
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 1.2e-276 956.4 724 70.9
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 1.6e-276 956.1 722 69.0
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 1.6e-276 956.1 724 70.7
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 2.7e-276 955.3 724 69.8
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 3.5e-276 954.9 724 71.5
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 7.8e-276 953.7 728 70.1
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 1.5e-274 949.5 747 68.8
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 2.5e-274 948.7 721 70.9
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 2.5e-274 948.7 746 69.4
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 4.3e-274 948.0 719 70.7
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 3.1e-272 941.8 731 69.4
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 1.3e-270 936.4 732 69.7
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 2.4e-269 932.2 731 69.5
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.4e-269 932.2 710 69.9
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 1.2e-268 929.9 730 69.2
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 4.6e-268 927.9 733 67.7
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 6.6e-267 924.1 723 67.8
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 2.5e-266 922.2 715 70.9
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 1.8e-264 916.0 723 67.2
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 2.0e-263 912.5 726 68.7
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 2.4e-261 905.6 626 75.7
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 3.0e-259 898.7 726 66.7
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 4.2e-253 878.2 721 65.2
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 6.6e-251 870.9 721 64.9
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 4.0e-232 808.5 726 62.4
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 1.5e-226 790.0 501 82.0
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.9e-218 763.1 521 77.0
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 2.7e-212 742.7 519 75.5
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 1.4e-208 730.3 522 74.7
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 3.3e-202 709.1 501 74.7
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 2.6e-186 656.4 497 70.0
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 2.8e-185 652.9 522 68.8
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 3.1e-163 579.7 711 50.9
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 4.4e-162 575.9 715 49.1
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.3e-134 484.6 753 42.0
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 2.1e-132 477.2 362 72.1
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 2.7e-127 460.3 710 40.3
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.5e-122 444.5 284 81.0
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 4.1e-107 393.3 731 36.5
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.6e-87 328.2 488 44.9
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 9.1e-83 312.4 205 78.5
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 1.5e-80 305.1 266 65.4
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 2.0e-74 284.6 187 73.8
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 6.5e-73 279.6 257 63.0
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 2.5e-64 251.1 186 71.5
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 8.0e-55 219.5 152 73.7
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 2.3e-46 191.4 1024 25.5
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.9e-43 181.8 91 94.5
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 3.2e-43 181.0 149 61.7
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.2e-29 136.0 80 85.0
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 4.0e-22 110.9 83 69.9
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 3.4e-21 107.8 53 92.5
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.1e-16 92.8 139 44.6
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 5.6e-16 90.5 81 54.3
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 2.4e-11 75.1 38 89.5
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 2.4e-11 75.1 38 89.5
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 7.1e-11 73.6 37 91.9


User provided reference genes

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