Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.4e-125 453.0 237 100.0
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 4.1e-96 355.1 239 79.9
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 1.7e-89 333.2 238 73.9
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.8e-88 329.7 238 74.4
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 9.7e-82 307.4 229 71.2
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 9.7e-82 307.4 238 69.3
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 6.3e-81 304.7 203 79.8
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.1e-80 303.9 204 75.5
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.0e-79 299.7 204 74.0
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 7.7e-79 297.7 233 70.0
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 2.9e-78 295.8 232 68.5
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 3.2e-77 292.4 229 69.4
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 4.2e-77 292.0 233 69.1
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 5.5e-77 291.6 232 67.2
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 1.6e-76 290.0 232 66.8
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 4.7e-76 288.5 237 63.7
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 1.4e-75 287.0 232 66.4
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 1.1e-74 283.9 235 64.3
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 2.6e-74 282.7 236 61.4
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 3.3e-74 282.3 235 66.4
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 7.4e-74 281.2 235 66.8
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 9.7e-74 280.8 235 65.1
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 3.7e-73 278.9 237 61.2
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 3.7e-73 278.9 235 63.4
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 8.2e-73 277.7 232 62.5
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 2.4e-72 276.2 233 63.5
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 2.4e-72 276.2 234 61.5
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 3.1e-72 275.8 232 63.4
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 4.1e-72 275.4 191 71.2
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 5.3e-72 275.0 232 61.2
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 9.1e-72 274.2 232 63.4
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 9.1e-72 274.2 232 63.4
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 1.2e-71 273.9 237 58.6
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.2e-71 273.9 232 63.4
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.0e-71 273.1 232 62.9
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 2.6e-71 272.7 235 60.4
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 5.9e-71 271.6 184 73.9
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 1.0e-70 270.8 237 62.0
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 1.7e-70 270.0 232 62.5
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.7e-70 270.0 196 66.8
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.2e-70 269.6 232 64.2
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 2.9e-70 269.2 232 62.9
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 3.8e-70 268.9 203 69.0
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 3.8e-70 268.9 237 59.5
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 3.8e-70 268.9 230 61.3
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 5.0e-70 268.5 238 58.8
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 8.5e-70 267.7 235 59.1
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 1.9e-69 266.5 232 60.3
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 2.5e-69 266.2 232 62.5
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 3.2e-69 265.8 236 61.9
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 3.2e-69 265.8 237 61.6
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 3.2e-69 265.8 231 60.2
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 3.2e-69 265.8 238 61.3
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 4.2e-69 265.4 239 58.2
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 5.5e-69 265.0 236 61.4
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 1.6e-68 263.5 236 61.0
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.6e-68 263.5 179 69.3
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 3.6e-68 262.3 238 60.9
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 4.7e-68 261.9 238 59.2
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.4e-67 260.4 238 59.7
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 2.3e-67 259.6 235 60.0
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.3e-67 259.6 232 61.6
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 2.3e-67 259.6 239 56.9
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 5.2e-67 258.5 238 57.1
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 6.8e-67 258.1 238 57.1
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 8.8e-67 257.7 238 57.1
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 1.2e-66 257.3 238 58.0
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 1.5e-66 256.9 237 58.2
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 7.5e-66 254.6 238 58.8
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 9.7e-66 254.2 182 67.0
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 3.7e-65 252.3 232 56.9
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 4.8e-65 251.9 238 58.0
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 5.3e-64 248.4 200 67.5
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.2e-63 247.3 250 55.2
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.2e-63 247.3 234 56.8
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.6e-63 246.9 232 60.8
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 4.5e-63 245.4 234 55.6
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.3e-62 243.8 267 50.9
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 1.3e-62 243.8 232 59.1
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 2.2e-62 243.0 232 56.5
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.2e-62 243.0 195 66.7
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 2.9e-62 242.7 237 57.4
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 3.8e-62 242.3 259 52.5
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.1e-61 240.7 194 58.8
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 1.1e-61 240.7 194 59.3
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.1e-61 240.7 194 59.8
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.5e-61 240.4 186 62.9
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.5e-61 240.4 198 61.1
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 4.2e-61 238.8 194 58.2
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 4.2e-61 238.8 232 56.5
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 5.5e-61 238.4 231 53.7
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 1.2e-60 237.3 197 56.9
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 3.6e-60 235.7 182 60.4
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 3.6e-60 235.7 232 57.3
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 4.7e-60 235.3 196 57.7
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 4.7e-60 235.3 196 57.7
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 1.4e-59 233.8 185 58.9
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 2.3e-59 233.0 185 58.9
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 2.3e-59 233.0 196 57.1
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 6.8e-59 231.5 225 53.8
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.2e-58 230.7 233 55.8
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.5e-58 230.3 233 56.7
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 2.0e-58 229.9 236 52.5
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 8.3e-57 224.6 236 51.3
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 1.8e-56 223.4 197 53.8
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 9.1e-56 221.1 234 51.7
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.6e-55 220.3 245 51.0
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 2.0e-55 219.9 254 55.1
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.0e-54 217.6 244 50.8
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 2.9e-54 216.1 157 68.8
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 3.8e-54 215.7 244 50.4
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.8e-54 215.7 244 50.4
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.2e-52 210.7 182 61.0
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 2.1e-52 209.9 124 82.3
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 2.8e-52 209.5 233 53.2
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.7e-52 208.8 262 48.1
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 5.2e-51 205.3 184 54.9
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 8.9e-51 204.5 230 52.2
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.5e-50 203.8 184 53.8
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.5e-50 201.4 142 69.0
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 3.3e-45 186.0 160 57.5
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 1.2e-44 184.1 231 47.2
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.2e-44 184.1 187 51.9
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.3e-41 174.1 239 45.2
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 1.3e-41 174.1 131 66.4
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.1e-40 171.0 237 42.2
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.4e-35 154.1 154 51.9
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 4.0e-35 152.5 256 37.9
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 2.6e-34 149.8 245 41.6
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 2.2e-33 146.7 215 40.9
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.7e-30 137.1 76 93.4
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 5.1e-30 135.6 116 58.6
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 3.3e-29 132.9 183 42.6
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.6e-28 130.6 184 41.8
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 1.6e-28 130.6 185 42.2
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 4.7e-28 129.0 77 83.1
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.1e-27 127.9 77 83.1
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.1e-27 127.9 231 37.7
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 2.6e-26 123.2 178 42.7
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 5.8e-18 95.5 88 54.5
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 9.3e-16 88.2 95 47.4
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 8.1e-12 75.1 72 50.0
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 2.0e-10 70.5 160 32.5
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 9.9e-10 68.2 177 28.2
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 1.9e-08 63.9 51 66.7
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 9.3e-08 61.6 40 82.5
Hma1.2p1_1265F.1_g271350 Hydrangea macrophylla HOM05D000467 ORTHO05D011240 4.6e-07 59.3 40 77.5
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 1.7e-06 57.4 47 59.6
SEGI_28115 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 3.0e-06 56.6 81 46.9


User provided reference genes

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