Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0502F.1_g167910 Hydrangea macrophylla HOM05D011745 ORTHO05D012903 1.0e-151 540.0 279 100.0
Dinv16893 Davidia involucrata HOM05D011745 ORTHO05D012903 1.6e-67 260.4 275 58.9
Dinv34535 Davidia involucrata HOM05D011745 ORTHO05D012903 1.8e-66 256.9 270 59.3
Dinv16890 Davidia involucrata HOM05D011745 ORTHO05D012903 1.4e-63 247.3 242 59.9
Hma1.2p1_0502F.1_g167890 Hydrangea macrophylla HOM05D011745 ORTHO05D012903 1.0e-58 231.1 218 63.8
Hma1.2p1_3050F.1_g332133 Hydrangea macrophylla HOM05D011745 ORTHO05D012903 1.0e-58 231.1 218 63.8
CSS0047786 Camellia sinensis var. sinensis HOM05D011745 ORTHO05D012903 1.3e-53 214.2 238 53.4
Dinv16888 Davidia involucrata HOM05D011745 ORTHO05D012903 1.5e-52 210.7 204 58.8
Actinidia01029 Actinidia chinensis HOM05D011745 ORTHO05D012903 8.8e-50 201.4 296 47.0
Actinidia01030 Actinidia chinensis HOM05D011745 ORTHO05D012903 4.0e-42 176.0 216 53.2
Atru.chr1.875 Acer truncatum HOM05D011745 ORTHO05D012903 1.3e-29 134.4 245 38.8
Atru.chr1.886 Acer truncatum HOM05D011745 ORTHO05D012903 5.0e-29 132.5 246 38.2
CSS0018771 Camellia sinensis var. sinensis HOM05D011745 ORTHO05D012903 4.7e-27 125.9 246 39.0
CSS0049062 Camellia sinensis var. sinensis HOM05D011745 ORTHO05D012903 1.1e-20 104.8 240 37.1
TAR375G0010 Trochodendron aralioides HOM05D000501 ORTHO05D012903 2.2e-16 90.5 228 37.3
TAR375G1069 Trochodendron aralioides HOM05D000480 ORTHO05D000313 2.7e-14 83.6 300 29.0
Cpa.g.sc13.223 Carica papaya HOM05D000480 ORTHO05D000313 1.3e-13 81.3 243 32.9
GSVIVG01024471001 Vitis vinifera HOM05D000480 ORTHO05D000313 8.6e-13 78.6 247 33.2
Thecc.03G145400 Theobroma cacao HOM05D000480 ORTHO05D000313 1.5e-12 77.8 313 28.4
Thecc.01G399500 Theobroma cacao HOM05D000480 ORTHO05D000313 1.9e-12 77.4 250 29.6
Potri.015G111300 Populus trichocarpa HOM05D000448 ORTHO05D000313 5.6e-12 75.9 239 32.2
Nn6g33764 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.6e-11 74.3 251 28.3
Cpa.g.sc13.225 Carica papaya HOM05D000480 ORTHO05D000313 2.1e-11 73.9 253 31.6
Duzib138G0994 Durio zibethinus HOM05D000480 ORTHO05D000291 3.6e-11 73.2 248 28.2
Potri.014G051100 Populus trichocarpa HOM05D000448 ORTHO05D000313 1.8e-10 70.9 264 26.9
COL.COLO4_37309 Corchorus olitorius HOM05D000448 ORTHO05D000291 2.4e-10 70.5 233 30.9
Duzib150G0219 Durio zibethinus HOM05D000448 ORTHO05D000291 2.4e-10 70.5 250 28.4
MD07G1241300 Malus domestica HOM05D000480 ORTHO05D000313 3.1e-10 70.1 234 28.6
FvH4_7g26700 Fragaria vesca HOM05D000448 ORTHO05D000313 5.2e-10 69.3 206 32.5
Manes.08G063800 Manihot esculenta HOM05D000480 ORTHO05D000313 5.2e-10 69.3 249 29.7
Potri.012G113800 Populus trichocarpa HOM05D000480 ORTHO05D000313 6.8e-10 68.9 284 27.8
Thecc.09G081800 Theobroma cacao HOM05D000448 ORTHO05D000291 8.9e-10 68.6 248 27.4
Nn6g35571 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.2e-09 68.2 262 29.8
FAN10G1476 Fragaria x ananassa HOM05D000480 ORTHO05D000313 2.0e-09 67.4 212 30.7
MD12G1230900 Malus domestica HOM05D000480 ORTHO05D000313 2.0e-09 67.4 264 28.0
FAN03G2598 Fragaria x ananassa HOM05D000480 ORTHO05D000313 4.4e-09 66.2 251 30.3
Gorai.004G069200 Gossypium raimondii HOM05D000480 ORTHO05D000313 4.4e-09 66.2 251 27.1
Nn8g40300 Nelumbo nucifera HOM05D000480 ORTHO05D000313 4.4e-09 66.2 253 32.8
QL02p061382 Quercus lobata HOM05D000448 ORTHO05D000291 4.4e-09 66.2 247 27.5
Gohir.D08G066600 Gossypium hirsutum HOM05D000480 ORTHO05D000313 5.8e-09 65.9 251 27.1
Thecc.03G145500 Theobroma cacao HOM05D000480 ORTHO05D000313 5.8e-09 65.9 315 27.0
Cfa013603 Carpinus fangiana HOM05D000480 ORTHO05D000313 7.6e-09 65.5 286 27.3
Cpa.g.sc13.230 Carica papaya HOM05D000448 ORTHO05D000291 9.9e-09 65.1 209 27.3
Gohir.D08G066500 Gossypium hirsutum HOM05D000480 ORTHO05D000313 9.9e-09 65.1 251 26.7
Gorai.004G068800 Gossypium raimondii HOM05D000480 ORTHO05D000313 9.9e-09 65.1 251 27.1
PSO170G4483 Papaver somniferum HOM05D000448 ORTHO05D000291 9.9e-09 65.1 187 29.9
Nn1g04187 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.3e-08 64.7 259 27.4
RcHm_v2.0_Chr1g0373281 Rosa chinensis HOM05D000480 ORTHO05D000313 1.3e-08 64.7 242 29.3
Thecc.01G398800 Theobroma cacao HOM05D000480 ORTHO05D000313 1.3e-08 64.7 249 26.5
FAN06G3463 Fragaria x ananassa HOM05D000480 ORTHO05D000313 1.7e-08 64.3 209 31.6
CSS0022140 Camellia sinensis var. sinensis HOM05D000480 ORTHO05D000313 2.2e-08 63.9 222 31.1
CSS0045251 Camellia sinensis var. sinensis HOM05D000480 ORTHO05D000313 2.2e-08 63.9 222 31.1
CiPaw.14G018700 Carya illinoinensis HOM05D000480 ORTHO05D000313 2.9e-08 63.5 271 25.5
Gohir.A08G057200 Gossypium hirsutum HOM05D000448 ORTHO05D000313 3.8e-08 63.2 251 26.3
AUR62007588 Chenopodium quinoa HOM05D000480 ORTHO05D000313 4.9e-08 62.8 279 28.3
CiPaw.04G146800 Carya illinoinensis HOM05D000448 ORTHO05D000291 6.4e-08 62.4 221 27.6
Carub.0004s2730 Capsella rubella HOM05D000480 ORTHO05D000313 8.4e-08 62.0 257 29.6
CAN.G1585.3 Capsicum annuum HOM05D000480 ORTHO05D000313 8.4e-08 62.0 248 28.6
Gohir.A08G057300 Gossypium hirsutum HOM05D000480 ORTHO05D000313 8.4e-08 62.0 254 26.8
MD01G1175400 Malus domestica HOM05D000480 ORTHO05D000313 8.4e-08 62.0 242 28.1
TWI23G1193 Tripterygium wilfordii HOM05D000480 ORTHO05D000313 8.4e-08 62.0 218 28.4
Atru.chr1.878 Acer truncatum HOM05D011745 ORTHO05D012903 1.1e-07 61.6 126 34.1
Atru.chr1.898 Acer truncatum HOM05D023178 ORTHO05D021064 1.1e-07 61.6 172 29.7
Oeu037434.1 Olea europaea HOM05D000480 ORTHO05D000313 1.1e-07 61.6 276 30.1
TWI14G0350 Tripterygium wilfordii HOM05D000448 ORTHO05D000313 1.1e-07 61.6 275 28.0
TAR375G1115 Trochodendron aralioides HOM05D000480 ORTHO05D000313 1.1e-07 61.6 257 30.4
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.4e-07 61.2 192 29.2
Haze_12822 Corylus avellana HOM05D000480 ORTHO05D000313 1.4e-07 61.2 240 27.9
Sabra12G0082900 Salix brachista HOM05D000480 ORTHO05D000313 1.4e-07 61.2 235 30.2
CiPaw.14G019000 Carya illinoinensis HOM05D000448 ORTHO05D015936 1.9e-07 60.8 242 26.0
Haze_12836 Corylus avellana HOM05D000480 ORTHO05D000313 1.9e-07 60.8 246 29.7
Haze_22225 Corylus avellana HOM05D004991 ORTHO05D006690 1.9e-07 60.8 246 28.0
CSS0042396 Camellia sinensis var. sinensis HOM05D011745 ORTHO05D012903 3.2e-07 60.1 53 62.3
Cfa014370 Carpinus fangiana HOM05D000480 ORTHO05D000313 3.2e-07 60.1 237 27.8
Ciclev10033891m.g Citrus clementina HOM05D000480 ORTHO05D000313 3.2e-07 60.1 254 29.5
Atru.chr6.1977 Acer truncatum HOM05D000448 ORTHO05D000313 4.1e-07 59.7 255 29.0
Migut.N01729 Erythranthe guttata HOM05D000480 ORTHO05D000313 4.1e-07 59.7 251 27.1
Nn1g04194 Nelumbo nucifera HOM05D000448 ORTHO05D000291 4.1e-07 59.7 259 27.0
CARHR139950 Cardamine hirsuta HOM05D000480 ORTHO05D000313 5.4e-07 59.3 241 28.2
QL02p000380 Quercus lobata HOM05D000448 ORTHO05D000291 5.4e-07 59.3 239 26.8
CiPaw.14G019200 Carya illinoinensis HOM05D000480 ORTHO05D000313 7.1e-07 58.9 244 23.4
MD07G1241500 Malus domestica HOM05D000480 ORTHO05D000313 9.2e-07 58.5 219 26.0
BcaB02g08854 Brassica carinata HOM05D000480 ORTHO05D000313 1.2e-06 58.2 265 27.5
Dinv16885 Davidia involucrata HOM05D021861 ORTHO05D024722 1.2e-06 58.2 92 40.2
Sp4g26800 Schrenkiella parvula HOM05D000480 ORTHO05D000313 1.2e-06 58.2 259 27.4
TAR375G0700 Trochodendron aralioides HOM05D000480 ORTHO05D000313 1.2e-06 58.2 211 32.2
CANSAT56G2348 Cannabis sativa HOM05D000480 ORTHO05D000313 2.1e-06 57.4 277 26.4
Sp4g26790 Schrenkiella parvula HOM05D000480 ORTHO05D015936 2.1e-06 57.4 254 24.8
GSVIVG01030638001 Vitis vinifera HOM05D000480 ORTHO05D000313 2.1e-06 57.4 260 25.0
Aqoxy6G01040 Aquilegia oxysepala HOM05D000480 ORTHO05D000313 2.7e-06 57.0 247 25.5
Hma1.2p1_0632F.1_g192470 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.7e-06 57.0 256 27.7
Manes.06G129901 Manihot esculenta HOM05D000448 ORTHO05D000291 3.5e-06 56.6 244 28.7
GSVIVG01003695001 Vitis vinifera HOM05D000480 ORTHO05D000313 3.5e-06 56.6 239 27.2
CiPaw.03G111300 Carya illinoinensis HOM05D000448 ORTHO05D000291 4.6e-06 56.2 216 26.9
Duzib170G0041 Durio zibethinus HOM05D000480 ORTHO05D000313 4.6e-06 56.2 284 25.0
Lj1A658T5 Lonicera japonica HOM05D000448 ORTHO05D000291 4.6e-06 56.2 204 27.9
Manes.08G055100 Manihot esculenta HOM05D055292 ORTHO05D012903 4.6e-06 56.2 123 33.3
Rhsim05G0013100 Rhododendron simsii HOM05D000448 ORTHO05D000291 4.6e-06 56.2 249 28.1
Carub.0004s2729 Capsella rubella HOM05D000480 ORTHO05D000313 6.0e-06 55.8 252 26.6
HanXRQChr16g0523061 Helianthus annuus HOM05D000448 ORTHO05D000291 6.0e-06 55.8 234 29.1
PSO210G1616 Papaver somniferum HOM05D000448 ORTHO05D000291 6.0e-06 55.8 138 29.7
THA.LOC104811543 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 6.0e-06 55.8 249 30.1
Ciclev10031687m.g Citrus clementina HOM05D000480 ORTHO05D000313 7.8e-06 55.5 219 28.3
Hma1.2p1_0632F.1_g192440 Hydrangea macrophylla HOM05D000448 ORTHO05D000313 7.8e-06 55.5 251 28.7


User provided reference genes

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